mRNA_F-distichus_contig96053.19060.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96053.19060.1
Unique NamemRNA_F-distichus_contig96053.19060.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96053.19060.1 vs. uniprot
Match: A0A6H5KC00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC00_9PHAE)

HSP 1 Score: 50.1 bits (118), Expect = 7.280e-5
Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1 
Query:   25 IGNGQAAWNALEEKYNSHTREARRTYHEKLHSTKMEAGDDPDDFLYTMDGFHERLEDIGLPVPDERYEDIILQALS 252
            +G+G AAW AL E++++ T+EARR  H +L + +  AG DP DF         RL+ +G  V D  Y DI+L  L+
Sbjct:   89 MGDGTAAWRALNERFDAQTQEARRACHNELFNLRHLAGGDPIDFFTKGWDLKLRLKVLGEEVSDLVYLDIMLSGLT 164
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96053.19060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KC00_9PHAE7.280e-540.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96053contigF-distichus_contig96053:1010..1306 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.1568055-CDS-F-distichus_contig96053:1009..13061622931138.1568055-CDS-F-distichus_contig96053:1009..1306Fucus distichus monoicousCDSF-distichus_contig96053 1010..1306 -
1690886174.4068418-CDS-F-distichus_contig96053:1009..13061690886174.4068418-CDS-F-distichus_contig96053:1009..1306Fucus distichus monoicousCDSF-distichus_contig96053 1010..1306 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96053.19060.1prot_F-distichus_contig96053.19060.1Fucus distichus monoicouspolypeptideF-distichus_contig96053 1010..1306 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96053.19060.1

>prot_F-distichus_contig96053.19060.1 ID=prot_F-distichus_contig96053.19060.1|Name=mRNA_F-distichus_contig96053.19060.1|organism=Fucus distichus monoicous|type=polypeptide|length=99bp
MGKTREDGIGNGQAAWNALEEKYNSHTREARRTYHEKLHSTKMEAGDDPD
DFLYTMDGFHERLEDIGLPVPDERYEDIILQALSAKYERVRTASYERRD
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mRNA from alignment at F-distichus_contig96053:1010..1306-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96053.19060.1 ID=mRNA_F-distichus_contig96053.19060.1|Name=mRNA_F-distichus_contig96053.19060.1|organism=Fucus distichus monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at F-distichus_contig96053:1010..1306- (Fucus distichus monoicous)
ATGGGCAAGACCAGGGAGGATGGGATCGGTAACGGACAAGCGGCATGGAA
TGCCCTGGAAGAGAAGTACAACAGCCACACCAGAGAGGCTAGAAGGACCT
ACCACGAAAAGCTGCACAGCACTAAAATGGAAGCAGGCGATGATCCCGAC
GATTTTCTGTACACCATGGACGGCTTTCACGAGCGTCTGGAGGACATTGG
CCTGCCAGTGCCTGACGAGCGGTACGAGGACATCATCCTTCAGGCCCTTT
CTGCCAAGTACGAGAGGGTGCGCACAGCCAGCTACGAGAGGCGGGAT
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Coding sequence (CDS) from alignment at F-distichus_contig96053:1010..1306-

>mRNA_F-distichus_contig96053.19060.1 ID=mRNA_F-distichus_contig96053.19060.1|Name=mRNA_F-distichus_contig96053.19060.1|organism=Fucus distichus monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at F-distichus_contig96053:1010..1306- (Fucus distichus monoicous)
ATGGGCAAGACCAGGGAGGATGGGATCGGTAACGGACAAGCGGCATGGAA
TGCCCTGGAAGAGAAGTACAACAGCCACACCAGAGAGGCTAGAAGGACCT
ACCACGAAAAGCTGCACAGCACTAAAATGGAAGCAGGCGATGATCCCGAC
GATTTTCTGTACACCATGGACGGCTTTCACGAGCGTCTGGAGGACATTGG
CCTGCCAGTGCCTGACGAGCGGTACGAGGACATCATCCTTCAGGCCCTTT
CTGCCAAGTACGAGAGGGTGCGCACAGCCAGCTACGAGAGGCGGGATATG
GGCAAGACCAGGGAGGATGGGATCGGTAACGGACAAGCGGCATGGAATGC
CCTGGAAGAGAAGTACAACAGCCACACCAGAGAGGCTAGAAGGACCTACC
ACGAAAAGCTGCACAGCACTAAAATGGAAGCAGGCGATGATCCCGACGAT
TTTCTGTACACCATGGACGGCTTTCACGAGCGTCTGGAGGACATTGGCCT
GCCAGTGCCTGACGAGCGGTACGAGGACATCATCCTTCAGGCCCTTTCTG
CCAAGTACGAGAGGGTGCGCACAGCCAGCTACGAGAGGCGGGAT
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