mRNA_F-distichus_contig96002.19053.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96002.19053.1
Unique NamemRNA_F-distichus_contig96002.19053.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96002.19053.1 vs. uniprot
Match: A0A6H5JIY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY4_9PHAE)

HSP 1 Score: 178 bits (452), Expect = 1.490e-53
Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:    1 SLRTKWKQEAGWESVADDDLEEWAPLGPDPLGCLPR--APPQSQPAIMVGWGFGSTRLTLYAYRALESLLHVYPKARVKFITIGPRYAFYYKWANIIARTQFQKYQKRGYDVKV 336
            S R +W+ EAGW  V  DDLEEWAPLGPDP+GCLPR  A P  QP ++VGWGFG+ +LTLY YRALES++HVYP ARV+ IT+GPR+AF+YKWANI+A TQFQKY KRGYDVKV
Sbjct:   66 SERERWQYEAGWGEVPLDDLEEWAPLGPDPIGCLPRTTANPAGQPKVLVGWGFGAPKLTLYGYRALESIMHVYPGARVRVITVGPRFAFFYKWANILALTQFQKYSKRGYDVKV 179
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BLAST of mRNA_F-distichus_contig96002.19053.1 vs. uniprot
Match: D7FSD4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD4_ECTSI)

HSP 1 Score: 178 bits (452), Expect = 1.540e-51
Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 1 
Query:    1 SLRTKWKQEAGWESVADDDLEEWAPLGPDPLGCLPR--APPQSQPAIMVGWGFGSTRLTLYAYRALESLLHVYPKARVKFITIGPRYAFYYKWANIIARTQFQKYQKRGYDVKV 336
            S R +W+ EAGW  V  DDLEEWAPLGPDP+GCLPR  A P  QP ++VGWGFG+ +LTLY YRALES++HVYP ARV+ IT+GPR+AF+YKWANI+A TQFQKY KRGYDVKV
Sbjct:   76 SERERWQYEAGWGEVPLDDLEEWAPLGPDPIGCLPRTTANPAGQPKVLVGWGFGAPKLTLYGYRALESIIHVYPGARVRVITVGPRFAFFYKWANILALTQFQKYSKRGYDVKV 189
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96002.19053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JIY4_9PHAE1.490e-5371.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FSD4_ECTSI1.540e-5171.05Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96002contigF-distichus_contig96002:611..1859 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001040.1
Exons2
Model size336
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.0359294-CDS-F-distichus_contig96002:610..8541622931137.0359294-CDS-F-distichus_contig96002:610..854Fucus distichus monoicousCDSF-distichus_contig96002 611..854 +
1690886173.8942158-CDS-F-distichus_contig96002:610..8541690886173.8942158-CDS-F-distichus_contig96002:610..854Fucus distichus monoicousCDSF-distichus_contig96002 611..854 +
1622931137.0522954-CDS-F-distichus_contig96002:1767..18591622931137.0522954-CDS-F-distichus_contig96002:1767..1859Fucus distichus monoicousCDSF-distichus_contig96002 1768..1859 +
1690886173.9054854-CDS-F-distichus_contig96002:1767..18591690886173.9054854-CDS-F-distichus_contig96002:1767..1859Fucus distichus monoicousCDSF-distichus_contig96002 1768..1859 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96002.19053.1prot_F-distichus_contig96002.19053.1Fucus distichus monoicouspolypeptideF-distichus_contig96002 611..1859 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96002.19053.1

>prot_F-distichus_contig96002.19053.1 ID=prot_F-distichus_contig96002.19053.1|Name=mRNA_F-distichus_contig96002.19053.1|organism=Fucus distichus monoicous|type=polypeptide|length=112bp
SLRTKWKQEAGWESVADDDLEEWAPLGPDPLGCLPRAPPQSQPAIMVGWG
FGSTRLTLYAYRALESLLHVYPKARVKFITIGPRYAFYYKWANIIARTQF
QKYQKRGYDVKV
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mRNA from alignment at F-distichus_contig96002:611..1859+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96002.19053.1 ID=mRNA_F-distichus_contig96002.19053.1|Name=mRNA_F-distichus_contig96002.19053.1|organism=Fucus distichus monoicous|type=mRNA|length=1249bp|location=Sequence derived from alignment at F-distichus_contig96002:611..1859+ (Fucus distichus monoicous)
TCTCTCAGGACAAAATGGAAGCAAGAAGCGGGGTGGGAAAGCGTTGCGGA
CGACGATCTCGAGGAATGGGCCCCGCTCGGACCCGACCCCCTCGGGTGCC
TCCCCAGGGCGCCTCCGCAGTCTCAGCCGGCGATCATGGTCGGTTGGGGC
TTCGGAAGCACGCGGCTGACGCTGTACGCGTACCGTGCGCTGGAGAGCTT
GCTGCACGTATACCCCAAGGCCAGGGTGAAGTTCATCACGATCGGTGAGT
CGGCACGCGTGTGATGCGGTCGCGCGTCGTGATAATAATATGGACACCAT
CATCCCGACAAATATACTCATAATAATGTAGGCACCATCATCCCGATAAG
TATACCCATAATAATATGGGCACTATCATCCCGACAAATATACTAGTAAT
AATATTGACACCATCATGGCGACAAATATACTAGTAATAATGAGCTGGTC
AGGCGTTCGCGTTTGAGGGCGTGATTAATGGTAGACACTTTTGATGGAGC
AGACATGTCAGTTTTTTGTTTGTTTGTTTTTTTCCTTTCCAAGGATTTGT
ATTGATACATTGGCGGTGTTGATGAGACAAAGGCCCAGACGCCTATCCTG
TTGACTTTTTCTGGACTATTAAATAGTGCAAAGCTATGAATGGTCCAGTG
AGTCGGCTCTTTCCGCCAGAGACAGCATTCTCTTCTAGACACTATTTACT
AAGTCTTCACACCAGCATGTCTCACGTCTGCACTACTGGTCTTTTGTTTG
TGTAGCTCTATGACTATGAGTATATATTTTACGTGTACACTGTTATCTGC
GTGTTCGTGACTCGTGTACAGTACAGGATCTGTTATTGTTGAGGGGTTGG
CTGTTTTGTTTGCATTATGTTGAAGGGGGATTAATTCATGTCAGAAATAT
ATGTTTCATCATATGTATCTAGTAGGACAAAATATAAACGTAAATATATT
TGCGTTCCGTTCAAGGGTTATTTAACAGTCTCCCAACGCACGCTTAGCAT
CACCTCTTAGTACCTCATATTTATTGCGTGATAAAACCTTGAAGCTTCCG
TCGCTAAACGCCGCACGTCACGAAGGCAATACTCTATACAAAACCATGCT
TGATTTGATGGGTCAACCACACGATTTTGTTTGTGTAAAACGTGAACGCC
TACCCAGGACCCCGGTACGCCTTTTACTACAAATGGGCAAATATCATCGC
CCGCACGCAGTTCCAGAAGTACCAGAAGAGGGGCTACGACGTCAAGGTA
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Coding sequence (CDS) from alignment at F-distichus_contig96002:611..1859+

>mRNA_F-distichus_contig96002.19053.1 ID=mRNA_F-distichus_contig96002.19053.1|Name=mRNA_F-distichus_contig96002.19053.1|organism=Fucus distichus monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at F-distichus_contig96002:611..1859+ (Fucus distichus monoicous)
TCTCTCAGGACAAAATGGAAGCAAGAAGCGGGGTGGGAAAGCGTTGCGGA
CGACGATCTCGAGGAATGGGCCCCGCTCGGACCCGACCCCCTCGGGTGCC
TCCCCAGGGCGCCTCCGCAGTCTCAGCCGGCGATCATGGTCGGTTGGGGC
TTCGGAAGCACGCGGCTGACGCTGTACGCGTACCGTGCGCTGGAGAGCTT
GCTGCACGTATACCCCAAGGCCAGGGTGAAGTTCATCACGATCGTCTCTC
AGGACAAAATGGAAGCAAGAAGCGGGGTGGGAAAGCGTTGCGGACGACGA
TCTCGAGGAATGGGCCCCGCTCGGACCCGACCCCCTCGGGTGCCTCCCCA
GGGCGCCTCCGCAGTCTCAGCCGGCGATCATGGTCGGTTGGGGCTTCGGA
AGCACGCGGCTGACGCTGTACGCGTACCGTGCGCTGGAGAGCTTGCTGCA
CGTATACCCCAAGGCCAGGGTGAAGTTCATCACGATCGGACCCCGGTACG
CCTTTTACTACAAATGGGCAAATATCATCGCCCGCACGCAGTTCCAGAAG
TACCAGAAGAGGGGCTACGACGTCAAGGTAGACCCCGGTACGCCTTTTAC
TACAAATGGGCAAATATCATCGCCCGCACGCAGTTCCAGAAGTACCAGAA
GAGGGGCTACGACGTCAAGGTA
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