mRNA_F-distichus_contig95077.18966.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig95077.18966.1
Unique NamemRNA_F-distichus_contig95077.18966.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: D7FQX4_ECTSI (ATP-binding cassette, sub-family D, member 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQX4_ECTSI)

HSP 1 Score: 129 bits (325), Expect = 4.340e-33
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1 
Query:    1 SGTIVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREE---------------ICGGVVFLPQRPYCFRGTLFEQVS 255
            +G IVREL++TVRRG N+L+TGPSGCGKTSLLRTIAGLWEA AGT+EL PRVE   +A EE               + GGV+F+PQRPYCFRGTLFEQV+
Sbjct:  803 AGAIVRELSLTVRRGHNVLITGPSGCGKTSLLRTIAGLWEAAAGTVELCPRVEACLRAHEERGTTGRRRPVAGDREVGGGVLFVPQRPYCFRGTLFEQVT 902
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: A0A6H5KC31_9PHAE (ABC transporter domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC31_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 3.800e-32
Identity = 65/100 (65.00%), Postives = 75/100 (75.00%), Query Frame = 1 
Query:    1 SGTIVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREE---------------ICGGVVFLPQRPYCFRGTLFEQVS 255
            +G IVREL++TVRRG N+L+TGPSGCGKTSLLRTIAGLWEA AGT+EL PRVE   +A EE                 GGV+F+PQRPYCFRGTLFEQV+
Sbjct:  506 AGAIVRELSLTVRRGCNVLITGPSGCGKTSLLRTIAGLWEAAAGTVELCPRVEACLRAHEERGTTGRGRTVAGDREAGGGVLFVPQRPYCFRGTLFEQVT 605
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: A0A7S2NKL1_9DINO (Hypothetical protein (Fragment) n=1 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2NKL1_9DINO)

HSP 1 Score: 79.3 bits (194), Expect = 2.230e-17
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 1 
Query:   19 ELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREEICGGVVFLPQRPYCFRGTLFEQVS 255
            +L++TV RG+ +LV GPSGCGKTSLLR  +GLWE EAGT+   P             G ++F+PQ+PY   G+L EQ+S
Sbjct:   15 DLSLTVGRGERVLVVGPSGCGKTSLLRVASGLWETEAGTVSRPP------------VGALLFVPQKPYMLLGSLREQLS 81
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: K0SL63_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SL63_THAOC)

HSP 1 Score: 79.0 bits (193), Expect = 2.950e-15
Identity = 40/81 (49.38%), Postives = 50/81 (61.73%), Query Frame = 1 
Query:   10 IVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREEICGGVVFLPQRPYCFRGTLFEQV 252
            ++  L +TVR G+NLL+ GPSGCGK+SLLR IAGLW A  G +   P  E            V FLPQRPYC  G+L +Q+
Sbjct:  519 LISGLDLTVRHGENLLIAGPSGCGKSSLLRAIAGLWNAGVGNITRVPDSE------------VYFLPQRPYCALGSLKDQL 587
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: A0A844MJK8_9CYAN (ATP-binding cassette domain-containing protein n=1 Tax=Scytonema sp. UIC 10036 TaxID=2304196 RepID=A0A844MJK8_9CYAN)

HSP 1 Score: 76.3 bits (186), Expect = 2.570e-14
Identity = 41/81 (50.62%), Postives = 51/81 (62.96%), Query Frame = 1 
Query:   10 IVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREEICGGVVFLPQRPYCFRGTLFEQV 252
            IV  L+++VR G+ LL+ GPSG GK+SLLR IAGLW+A  G L   PR E            ++FLPQRPY   GTL EQ+
Sbjct:  390 IVENLSLSVRAGEGLLIVGPSGRGKSSLLRAIAGLWDAGTGRLVRPPRQE------------ILFLPQRPYIILGTLREQL 458
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: A0A2H2Y3V1_9CYAN (ABC transporter ATP-binding protein n=2 Tax=unclassified Calothrix TaxID=2619626 RepID=A0A2H2Y3V1_9CYAN)

HSP 1 Score: 75.5 bits (184), Expect = 4.770e-14
Identity = 39/82 (47.56%), Postives = 55/82 (67.07%), Query Frame = 1 
Query:    7 TIVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREEICGGVVFLPQRPYCFRGTLFEQV 252
            T+V  L+I + +G+ +LV+GPSGCGK+SLLR IAGLW+A  GT++  P ++            ++FLPQRPY   GTL EQ+
Sbjct:  373 TLVEGLSIKLSKGEGMLVSGPSGCGKSSLLRAIAGLWDAGTGTIK-RPTLDQ-----------ILFLPQRPYMILGTLREQM 442
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: UPI00168325D2 (ATP-binding cassette domain-containing protein n=2 Tax=Nostocales TaxID=1161 RepID=UPI00168325D2)

HSP 1 Score: 75.5 bits (184), Expect = 4.800e-14
Identity = 41/81 (50.62%), Postives = 53/81 (65.43%), Query Frame = 1 
Query:   10 IVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREEICGGVVFLPQRPYCFRGTLFEQV 252
            IV+ L++ V  GQ LL+ GPSG GK+SLLR IAGLWEA AG + + P++E            ++FLPQRPY   GTL EQ+
Sbjct:  375 IVKNLSLLVESGQGLLIVGPSGRGKSSLLRAIAGLWEAGAGKI-IRPKLEE-----------ILFLPQRPYLILGTLREQL 443
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: UPI00168659D1 (ATP-binding cassette domain-containing protein n=1 Tax=Nostoc sp. FACHB-110 TaxID=2692834 RepID=UPI00168659D1)

HSP 1 Score: 75.5 bits (184), Expect = 4.820e-14
Identity = 42/82 (51.22%), Postives = 51/82 (62.20%), Query Frame = 1 
Query:    7 TIVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREEICGGVVFLPQRPYCFRGTLFEQV 252
            TIV +LT+ V+ G+ LL+ GPSG GK+SLLR IAGLW A  G+L   P  E            V+FLPQRPY   GTL EQ+
Sbjct:  389 TIVEDLTLDVQSGEGLLIVGPSGRGKSSLLRAIAGLWNAGTGSLVRPPLEE------------VLFLPQRPYIILGTLREQL 458
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: UPI0019520833 (ABC transporter ATP-binding protein/permease n=1 Tax=Spirulina major TaxID=270636 RepID=UPI0019520833)

HSP 1 Score: 75.1 bits (183), Expect = 6.520e-14
Identity = 38/82 (46.34%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    7 TIVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREEICGGVVFLPQRPYCFRGTLFEQV 252
            T+ R+L++ ++ GQ LL+ GPSGCGK+SLLR IAGLW+A  G +   P+++            ++FLPQRPY   GTL EQ+
Sbjct:  373 TLFRDLSVALQPGQGLLIVGPSGCGKSSLLRAIAGLWDAGTGRIT-RPQLDD-----------ILFLPQRPYMIMGTLREQL 442
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BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Match: A0A1U7H6I7_9NOSO (ABC transporter n=1 Tax=Nostoc calcicola FACHB-389 TaxID=1357508 RepID=A0A1U7H6I7_9NOSO)

HSP 1 Score: 75.1 bits (183), Expect = 6.580e-14
Identity = 42/82 (51.22%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:    7 TIVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAPRVEHAQQAREEICGGVVFLPQRPYCFRGTLFEQV 252
            TIV++L+++V+ G+ LL+ GPSG GK+SLLR IAGLW A  G L L P +E            V+FLPQRPY   GTL EQ+
Sbjct:  389 TIVKDLSLSVQSGEGLLIVGPSGRGKSSLLRAIAGLWNAGTGRL-LRPSLEE-----------VLFLPQRPYIILGTLREQL 458
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig95077.18966.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQX4_ECTSI4.340e-3365.00ATP-binding cassette, sub-family D, member 4 n=1 T... [more]
A0A6H5KC31_9PHAE3.800e-3265.00ABC transporter domain-containing protein n=1 Tax=... [more]
A0A7S2NKL1_9DINO2.230e-1749.37Hypothetical protein (Fragment) n=1 Tax=Brandtodin... [more]
K0SL63_THAOC2.950e-1549.38Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A844MJK8_9CYAN2.570e-1450.62ATP-binding cassette domain-containing protein n=1... [more]
A0A2H2Y3V1_9CYAN4.770e-1447.56ABC transporter ATP-binding protein n=2 Tax=unclas... [more]
UPI00168325D24.800e-1450.62ATP-binding cassette domain-containing protein n=2... [more]
UPI00168659D14.820e-1451.22ATP-binding cassette domain-containing protein n=1... [more]
UPI00195208336.520e-1446.34ABC transporter ATP-binding protein/permease n=1 T... [more]
A0A1U7H6I7_9NOSO6.580e-1451.22ABC transporter n=1 Tax=Nostoc calcicola FACHB-389... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig95077contigF-distichus_contig95077:1276..1530 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.1
Seed ortholog evalue1.2e-28
Seed eggNOG ortholog2880.D7FQX4
Preferred nameABCD2
KEGG koko:K05675,ko:K05676,ko:K05677,ko:K05678,ko:K15628
KEGG TC3.A.1.203,3.A.1.203.1,3.A.1.203.2,3.A.1.203.3,3.A.1.203.6,3.A.1.203.7
KEGG Pathwayko02010,ko04146,map02010,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0000038,GO:0000166,GO:0001676,GO:0003674,GO:0003824,GO:0005215,GO:0005319,GO:0005324,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005778,GO:0005779,GO:0005829,GO:0006082,GO:0006629,GO:0006631,GO:0006635,GO:0006810,GO:0006811,GO:0006820,GO:0006869,GO:0006996,GO:0007031,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009062,GO:0009605,GO:0009607,GO:0009617,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010565,GO:0010876,GO:0015399,GO:0015405,GO:0015711,GO:0015718,GO:0015849,GO:0015908,GO:0015909,GO:0015910,GO:0015919,GO:0016020,GO:0016021,GO:0016042,GO:0016043,GO:0016054,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017076,GO:0017111,GO:0017144,GO:0019216,GO:0019217,GO:0019222,GO:0019395,GO:0019752,GO:0019899,GO:0022804,GO:0022857,GO:0030258,GO:0030554,GO:0031090,GO:0031224,GO:0031231,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031329,GO:0031331,GO:0031903,GO:0031998,GO:0032000,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033036,GO:0033540,GO:0033559,GO:0034220,GO:0034440,GO:0035639,GO:0036094,GO:0036109,GO:0042579,GO:0042623,GO:0042626,GO:0042758,GO:0042760,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0043492,GO:0043574,GO:0043651,GO:0044237,GO:0044238,GO:0044242,GO:0044248,GO:0044255,GO:0044281,GO:0044282,GO:0044422,GO:0044424,GO:0044425,GO:0044438,GO:0044439,GO:0044444,GO:0044446,GO:0044464,GO:0045834,GO:0045923,GO:0046320,GO:0046321,GO:0046395,GO:0046907,GO:0046942,GO:0046983,GO:0048471,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0050994,GO:0050996,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0055085,GO:0055114,GO:0062012,GO:0062013,GO:0065007,GO:0071702,GO:0071704,GO:0071840,GO:0072329,GO:0080090,GO:0097159,GO:0097367,GO:0098588,GO:0098656,GO:0098805,GO:1901265,GO:1901363,GO:1901575,GO:1902001,GO:1903825,GO:1905039
EggNOG free text desc.ATP-binding cassette sub-family D
EggNOG OGsCOG4178@1,KOG0060@2759,KOG0064@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size255
Cds size255
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931127.216952-CDS-F-distichus_contig95077:1275..15301622931127.216952-CDS-F-distichus_contig95077:1275..1530Fucus distichus monoicousCDSF-distichus_contig95077 1276..1530 +
1690886169.5279021-CDS-F-distichus_contig95077:1275..15301690886169.5279021-CDS-F-distichus_contig95077:1275..1530Fucus distichus monoicousCDSF-distichus_contig95077 1276..1530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig95077.18966.1prot_F-distichus_contig95077.18966.1Fucus distichus monoicouspolypeptideF-distichus_contig95077 1276..1530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig95077.18966.1

>prot_F-distichus_contig95077.18966.1 ID=prot_F-distichus_contig95077.18966.1|Name=mRNA_F-distichus_contig95077.18966.1|organism=Fucus distichus monoicous|type=polypeptide|length=85bp
SGTIVRELTITVRRGQNLLVTGPSGCGKTSLLRTIAGLWEAEAGTLELAP
RVEHAQQAREEICGGVVFLPQRPYCFRGTLFEQVS
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mRNA from alignment at F-distichus_contig95077:1276..1530+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig95077.18966.1 ID=mRNA_F-distichus_contig95077.18966.1|Name=mRNA_F-distichus_contig95077.18966.1|organism=Fucus distichus monoicous|type=mRNA|length=255bp|location=Sequence derived from alignment at F-distichus_contig95077:1276..1530+ (Fucus distichus monoicous)
TCGGGGACGATCGTGCGGGAGCTGACGATCACCGTGCGCCGCGGGCAAAA
CCTTCTCGTGACTGGCCCGAGCGGGTGCGGAAAGACATCGCTTCTTAGAA
CTATTGCCGGCCTGTGGGAGGCGGAGGCGGGGACATTGGAGCTCGCTCCC
CGGGTTGAACATGCACAGCAGGCGCGGGAGGAAATCTGCGGAGGGGTGGT
GTTCTTGCCGCAGCGGCCGTACTGCTTTCGAGGAACGCTGTTCGAGCAGG
TGAGT
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Coding sequence (CDS) from alignment at F-distichus_contig95077:1276..1530+

>mRNA_F-distichus_contig95077.18966.1 ID=mRNA_F-distichus_contig95077.18966.1|Name=mRNA_F-distichus_contig95077.18966.1|organism=Fucus distichus monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at F-distichus_contig95077:1276..1530+ (Fucus distichus monoicous)
TCGGGGACGATCGTGCGGGAGCTGACGATCACCGTGCGCCGCGGGCAAAA
CCTTCTCGTGACTGGCCCGAGCGGGTGCGGAAAGACATCGCTTCTTAGAA
CTATTGCCGGCCTGTGGGAGGCGGAGGCGGGGACATTGGAGCTCGCTCCC
CGGGTTGAACATGCACAGCAGGCGCGGGAGGAAATCTGCGGAGGGGTGGT
GTTCTTGCCGCAGCGGCCGTACTGCTTTCGAGGAACGCTGTTCGAGCAGG
TGAGTTCGGGGACGATCGTGCGGGAGCTGACGATCACCGTGCGCCGCGGG
CAAAACCTTCTCGTGACTGGCCCGAGCGGGTGCGGAAAGACATCGCTTCT
TAGAACTATTGCCGGCCTGTGGGAGGCGGAGGCGGGGACATTGGAGCTCG
CTCCCCGGGTTGAACATGCACAGCAGGCGCGGGAGGAAATCTGCGGAGGG
GTGGTGTTCTTGCCGCAGCGGCCGTACTGCTTTCGAGGAACGCTGTTCGA
GCAGGTGAGT
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