mRNA_F-distichus_contig9505.18964.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9505.18964.1
Unique NamemRNA_F-distichus_contig9505.18964.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9505.18964.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9505contigF-distichus_contig9505:6677..11327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size923
Cds size921
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.6973171-CDS-F-distichus_contig9505:6676..72051622931126.6973171-CDS-F-distichus_contig9505:6676..7205Fucus distichus monoicousCDSF-distichus_contig9505 6677..7205 +
1690886169.465703-CDS-F-distichus_contig9505:6676..72051690886169.465703-CDS-F-distichus_contig9505:6676..7205Fucus distichus monoicousCDSF-distichus_contig9505 6677..7205 +
1622931126.7163665-CDS-F-distichus_contig9505:10933..113251622931126.7163665-CDS-F-distichus_contig9505:10933..11325Fucus distichus monoicousCDSF-distichus_contig9505 10934..11325 +
1690886169.4797273-CDS-F-distichus_contig9505:10933..113251690886169.4797273-CDS-F-distichus_contig9505:10933..11325Fucus distichus monoicousCDSF-distichus_contig9505 10934..11325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9505.18964.1prot_F-distichus_contig9505.18964.1Fucus distichus monoicouspolypeptideF-distichus_contig9505 6677..11325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9505.18964.1

>prot_F-distichus_contig9505.18964.1 ID=prot_F-distichus_contig9505.18964.1|Name=mRNA_F-distichus_contig9505.18964.1|organism=Fucus distichus monoicous|type=polypeptide|length=307bp
VNGIRNVNGSCNTSTSSMSTGAIGSPVAAAAAAAVAAVRSTPSCASTPAP
PPPPGSTGSPAGTQTDALVLPKPPGDEEWWDVLEGEDFMAMSDSIWDTQH
SQHDDAAGFVEVDSDGRRNGGGDGYFMISGDDCGGVVGVDATSSINKNKN
NNAGGLSHEPAKRRRQSSIASIASIGDHRQDRHQDHYQHHHHHQHHHHHA
VPSLFSTTPSGSTINIRPANNNININITKRDLVPSGFGLTVVPSSSSNVH
SSSPLTLAPSMTSGTLMTNGGSMGVGAGGGGGLLRASSGGMGIGMGAGVS
QQGGVMS
back to top

mRNA from alignment at F-distichus_contig9505:6677..11327+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9505.18964.1 ID=mRNA_F-distichus_contig9505.18964.1|Name=mRNA_F-distichus_contig9505.18964.1|organism=Fucus distichus monoicous|type=mRNA|length=4651bp|location=Sequence derived from alignment at F-distichus_contig9505:6677..11327+ (Fucus distichus monoicous)
GTCAACGGCATCCGCAATGTAAACGGCTCTTGCAATACCTCGACCTCCTC
GATGTCGACGGGAGCGATCGGTTCTCCCGTGGCCGCCGCCGCTGCGGCAG
CGGTGGCCGCTGTGCGATCCACTCCGTCCTGCGCCTCGACTCCTGCTCCG
CCACCGCCTCCTGGTTCGACTGGTTCTCCCGCGGGCACCCAAACGGACGC
GCTTGTCCTCCCCAAGCCACCCGGGGATGAAGAGTGGTGGGATGTACTGG
AGGGGGAAGATTTCATGGCGATGTCTGACTCCATTTGGGACACTCAGCAC
AGCCAGCACGACGACGCCGCTGGTTTTGTTGAAGTGGATAGCGACGGTAG
AAGGAATGGAGGTGGGGACGGATATTTCATGATCTCCGGTGATGACTGCG
GCGGCGTCGTCGGGGTTGATGCGACTTCCAGCATCAACAAAAATAAGAAC
AACAATGCAGGAGGCTTGAGCCATGAGCCCGCGAAGAGGCGGCGTCAATC
TTCCATAGCTTCCATAGCTTCCATAGGGGGTGAGTGATTCCTACGTACAA
GATATCTGTAGCAAGTAGACTAATGCGTACCTAGTTATTATTAGAATATG
CAAGTATGTGTTGCTGGAAGTACAGAATACCAATGAATCAGGTAAAAGAT
GACCGGTAAAGGCGTATATCTCTGCTGTCTTCATGTTCCTTTTCAATTTA
TTTTTTGTTTTGAAAACGGTGGGAACGCACAGCCGAACGTACTGTACTGT
ACTGCACTGTACTGTACTGTACTGTACTGTATTTTCAAAGAAAAAATTGA
ACGCATCTAGACCTTCTGTATTGTCTTATGTCTTATCTTGTCCTCCCTCC
TCTTTTGGGGGAAAGCACCTCATATAGAAATTACCAGTACTGTATCGTGC
AGTACGAGTACCTCGTACCATAATACTAAATACGGTTGAAAACTTGATTT
CTCCTAGCCTAACGTTCAGCATTTGTGGCAGCTCGGGCCCTCGGCGGCAC
CTCCGCCAGCGCCAAAGCTCGCCAAAAAACAAAACAAAAAGTACTATTAA
TATTATAGTACAGTATTATTAGTATTATAGTATTTAGGGGTACGCTCTCT
CTCTTGTTGGGTTGATAGATTTCATTTAATTTAGATTTCCTGTGGAACTT
TCTACAGAAAATATAGCCAGCGTAAGTATGCACTGCCATCTGAGATACAG
TAACCCTGCTGTCATGCCATGCCTGCTGTCTCTCTTTACTTTTTGAGCGG
TGGGATGGATTTGGATGGATTTGGAACGGAGAATGTAAAGCTCTATTTGG
CTCAAAGTCTCGCCGAGAACCTCCGCAATCTGAACTCGATTTTTAAGGCG
TGTCAGCGCTTTCCCTTCCATTTTGTCGTTTTATCACCTATCGATTTTCA
TGATACAGTACTTGATACTATACGGTCGCTTTTTCTTGATACCTGGTACT
TGATTTCCAGTACAGTACAGTACAGTACAGTACAGTACGCTGAATATTCT
ATAAACAATGACCACAAGAACTGTACGTGATACGACCCGGCTGTACTTGA
GTTTTGTCACCAAAATAACTGTTCTCCCGTCGGAGGCATGATTTGTTCGA
GGACAGTTCGAGGACAGACGTAGGGGCGGGGGATGAGGGAACCTTTGAAT
TTGAGACACCAGTCGGTGACACGGTGATGATAATAATGATAAGAGACAGG
AATAGGGACGCGATTTTGTTTTTCTCGAACAACCTTTGGGAAAAACCAAA
CAACCAAACCGCTTTGCTCCTTAACGTCCTTGGAACGTTGTATACTAGCT
GCTTTCCGCGACGGCACTTAGTCTACGCCGTCAGACGACATCGGGTCAGT
CCCGAGTTTATCTGGTCACGTAATTCCGTACCCGTGGTGCTAACTGCCGA
GAATCCACCTACACAGAACCAGTAGTCCTCAAGGTAGTTCCAGTAGGGAG
TGATGCCTTTTTCAGGTTTCACCATGGACCAACTTTTCATGTGCCTCTCT
TTTCCCACACCCACTAGACTATACTATTATAATATTGGTACGTAGTATAA
ATAGTGGGCATGCGCGATATAGTGTGATACAGAAAGACTCAAGTGTAGGA
GACGGTAGGATAATGGATACAGTACGTGATACCTGGTAGTCTATGCGCTG
TACTAATATTACATTCTACTGTATAATACATCCAAACACTGTAATGTAAG
ACTAACAGACTATTATATTGATAGCGTCTAACATTAATCACGAAACATGG
CTTAACCTACACCTACATTAAACAAAAATACACTACAGCCTTAATAGTGC
TTTCGGTATTTGTGAGGGTGATTATGTCGAGAGTATGTTATGGTACTTAT
TAATTTAATTTTATCATTATTTGATACAGCACGAGTATCTTTGCCGAAGG
GGTCAGGTTACGATTATAATATTGTATGTTATTATTATGTATGGACAGCT
TTTATATATAGTGTATGTACTACATGGTTCTACGTGGTGCCGCGAGTACG
AAATTGTGCACTGGTACAGCTACAGTGTGTGTGTGTGTGTGTGTATTTAT
TAAATTGCACATAACCGCGCAATCCGGCCCTGTCATCCTAGTCATTCTAT
GCCACTCGCATTGATCCTCCCGAGGGGGGATCAATGATACTTATTACGAA
AACCTCTGATCAGACGCGACAAATGTGCGTGTGTGTGTGTGTGTACTCCG
GAGTATTTACCAAATTGTACACAACCGCGCAATCCGGCTCCTGGTCCTAT
TAATATACTGATACGTAGTTGTTATTCTATGCCACTCGCGTTGATCCTCC
CAAAAGGGGATCAATGATGCGTGTGTGTGTGTTATTCATATTAACCCATC
GGGCCTTAACCGTACCCGGTAATATATTATATGCGGATGCCAATCCGGTA
GTAGTACACGTTACGTGGTCAGCTGGATAGGAAAATACCAGAGGAACTTC
AACAAAGCTCCAACGAGAGCATTAAAGTAAATAAAAAAAGGCAAAGAACG
ACAAAAATAATGGAAATATAACAAAACAAGCTGACTCTAGAAATATTTTG
TTGGAATGAAATGTCCAACAATCAGTACTGTGCTGTACTGTACTGCAGCG
TCTTCGACCTCCCCCTCCTCCTTCGCTTCCCACTTCCCACTTGTTACTAT
AATACTAATACTATTAATACTACTACTACTACAACAGCTACTACTACAGT
AAATGTACTATAATATTAATACACAGTCACACACATAGTGTGCATAGTAG
TGCGAACACCAAAACACTGGCGGATACTTGTACGGTATCAACTTCTACGA
ATAGGAATGTCCGAGTACAAACGTTAATACGTAATAGGAATGTCCGAGTA
CAAACGTTAATACGTTTTTTTGTTGTTTAAAGAAAAATGTGAATGCACCT
AGACCTTCTGATCCGTTTTTTTGTTGTTGTTGCTATTTAAAGATTGTTTG
TAACTCACTTAGACTATGACCGATGGGCCTCAACGTGCTATTAACAGTAA
TAGGTTGCCTATCCCACCTACAGCAACGTTACCATCTTGCCTGTGGCCAC
TAAGAATCTTCCCATCTCTCCCCGGTTCTTGCCTATGATTTTCCACCGCG
ATGCAAACTCAGCACTATGACACCTCGTCCACTAAATTGAATGGTTGAAT
TTTACTTACTCACGTTCTCACACTTTCCTTTCCGCCATTACGCCATTACG
CCATTATGATACTACGGAAGCCAGAATAAAAGACATGGCTCTGTCAAGAA
TCGAACAATCGAACTATCCAATTATCCAACTATCGAACAATCGAACAATC
GAACAATCGAACTATCTCACGATTCCGCCCGGACGATCTATCATAAGAGG
TTGCCTCTTGTGCACTCGGGCGACGAGTTCTCTTTTAATACGGAGCACGA
GTACAGTACAGTACAGTACAGTACAGTACCAGCTATTCTAACCGTTGTCT
AATACGATACGTACATCAAGTGCTCAGAAGGTCTAAATACGTTCAGATTT
TTCTTTAGAACACGTTTTTTTTACAAACCATAAATATTAATAATAGCCAC
GAATATTAATATGAATGGTACGTTCTCACGGTTACCGTAGTGCAGGGTAG
TTAAATAGTTACATCCACTATTGATACTATTAGCCCTATTAATAGCCAAT
GCTATAATCAATACTATAACCAATGGTTACCCATTCTAACCAATACCATC
GTCCTACGTTCTCGGTACACTTGGGTCGGTGCGCCGCTCATTCTTTTTTA
TTTCAAGATCACCGCCAAGATCGCCACCAAGATCACTACCAACACCATCA
TCATCACCAACACCACCACCATCATGCGGTCCCGTCACTCTTCAGCACGA
CCCCCTCAGGCTCCACCATCAACATTCGTCCCGCCAACAACAACATCAAC
ATCAACATCACCAAGCGAGACCTCGTCCCAAGCGGGTTCGGCCTAACCGT
TGTACCGAGTAGCAGCAGCAACGTCCACAGCAGTAGCCCTTTAACATTGG
CTCCATCGATGACCAGCGGCACATTGATGACCAACGGAGGAAGCATGGGG
GTCGGCGCAGGTGGCGGGGGGGGCTTGTTGCGAGCGTCCTCGGGAGGCAT
GGGAATCGGCATGGGTGCAGGGGTCTCACAGCAAGGAGGCGTGATGAGTA
A
back to top

Coding sequence (CDS) from alignment at F-distichus_contig9505:6677..11327+

>mRNA_F-distichus_contig9505.18964.1 ID=mRNA_F-distichus_contig9505.18964.1|Name=mRNA_F-distichus_contig9505.18964.1|organism=Fucus distichus monoicous|type=CDS|length=1842bp|location=Sequence derived from alignment at F-distichus_contig9505:6677..11327+ (Fucus distichus monoicous)
GTCAACGGCATCCGCAATGTAAACGGCTCTTGCAATACCTCGACCTCCTC
GATGTCGACGGGAGCGATCGGTTCTCCCGTGGCCGCCGCCGCTGCGGCAG
CGGTGGCCGCTGTGCGATCCACTCCGTCCTGCGCCTCGACTCCTGCTCCG
CCACCGCCTCCTGGTTCGACTGGTTCTCCCGCGGGCACCCAAACGGACGC
GCTTGTCCTCCCCAAGCCACCCGGGGATGAAGAGTGGTGGGATGTACTGG
AGGGGGAAGATTTCATGGCGATGTCTGACTCCATTTGGGACACTCAGCAC
AGCCAGCACGACGACGCCGCTGGTTTTGTTGAAGTGGATAGCGACGGTAG
AAGGAATGGAGGTGGGGACGGATATTTCATGATCTCCGGTGATGACTGCG
GCGGCGTCGTCGGGGTTGATGCGACTTCCAGCATCAACAAAAATAAGAAC
AACAATGCAGGAGGCTTGAGCCATGAGCCCGCGAAGAGGCGGCGTCAATC
TTCCATAGCTTCCATAGCTTCCATAGGGGGTCAACGGCATCCGCAATGTA
AACGGCTCTTGCAATACCTCGACCTCCTCGATGTCGACGGGAGCGATCGG
TTCTCCCGTGGCCGCCGCCGCTGCGGCAGCGGTGGCCGCTGTGCGATCCA
CTCCGTCCTGCGCCTCGACTCCTGCTCCGCCACCGCCTCCTGGTTCGACT
GGTTCTCCCGCGGGCACCCAAACGGACGCGCTTGTCCTCCCCAAGCCACC
CGGGGATGAAGAGTGGTGGGATGTACTGGAGGGGGAAGATTTCATGGCGA
TGTCTGACTCCATTTGGGACACTCAGCACAGCCAGCACGACGACGCCGCT
GGTTTTGTTGAAGTGGATAGCGACGGTAGAAGGAATGGAGGTGGGGACGG
ATATTTCATGATCTCCGGTGATGACTGCGGCGGCGTCGTCGGGGTTGATG
CGACTTCCAGCATCAACAAAAATAAGAACAACAATGCAGGAGGCTTGAGC
CATGAGCCCGCGAAGAGGCGGCGTCAATCTTCCATAGCTTCCATAGCTTC
CATAGGGGATCACCGCCAAGATCGCCACCAAGATCACTACCAACACCATC
ATCATCACCAACACCACCACCATCATGCGGTCCCGTCACTCTTCAGCACG
ACCCCCTCAGGCTCCACCATCAACATTCGTCCCGCCAACAACAACATCAA
CATCAACATCACCAAGCGAGACCTCGTCCCAAGCGGGTTCGGCCTAACCG
TTGTACCGAGTAGCAGCAGCAACGTCCACAGCAGTAGCCCTTTAACATTG
GCTCCATCGATGACCAGCGGCACATTGATGACCAACGGAGGAAGCATGGG
GGTCGGCGCAGGTGGCGGGGGGGGCTTGTTGCGAGCGTCCTCGGGAGGCA
TGGGAATCGGCATGGGTGCAGGGGTCTCACAGCAAGGAGGCGTGATGAGT
ATCACCGCCAAGATCGCCACCAAGATCACTACCAACACCATCATCATCAC
CAACACCACCACCATCATGCGGTCCCGTCACTCTTCAGCACGACCCCCTC
AGGCTCCACCATCAACATTCGTCCCGCCAACAACAACATCAACATCAACA
TCACCAAGCGAGACCTCGTCCCAAGCGGGTTCGGCCTAACCGTTGTACCG
AGTAGCAGCAGCAACGTCCACAGCAGTAGCCCTTTAACATTGGCTCCATC
GATGACCAGCGGCACATTGATGACCAACGGAGGAAGCATGGGGGTCGGCG
CAGGTGGCGGGGGGGGCTTGTTGCGAGCGTCCTCGGGAGGCATGGGAATC
GGCATGGGTGCAGGGGTCTCACAGCAAGGAGGCGTGATGAGT
back to top