mRNA_F-distichus_contig95041.18961.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig95041.18961.1
Unique NamemRNA_F-distichus_contig95041.18961.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Match: A0A3Q2DH93_CYPVA (Cyclin dependent kinase inhibitor 2B n=2 Tax=Cyprinodon TaxID=28741 RepID=A0A3Q2DH93_CYPVA)

HSP 1 Score: 55.1 bits (131), Expect = 1.100e-7
Identity = 28/53 (52.83%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:    1 VGQVLLENRADPNARDM-TGRTPLHRASRWGAPDCGLLLLDAGADIEARERAE 156
            V Q+LLE+ ADPN  D  TG TPLH A+R G  D   LL++AGA+++AR++A+
Sbjct:   50 VAQLLLEHGADPNVADSSTGSTPLHDAARTGFLDTVRLLVEAGANLQARDKAD 102
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BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Match: A0A3B3BJG7_ORYME (Cyclin-dependent kinase 4 inhibitor B-like n=2 Tax=Oryzias melastigma TaxID=30732 RepID=A0A3B3BJG7_ORYME)

HSP 1 Score: 53.1 bits (126), Expect = 6.760e-7
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 VGQVLLENRADPNARDMT-GRTPLHRASRWGAPDCGLLLLDAGADIEARERA 153
            V QVLL + ADPN  D T G TPLH A+R G  D   LL+ AGAD +AR++A
Sbjct:   50 VAQVLLRHGADPNVADQTTGATPLHDAARTGFLDTVRLLVQAGADPQARDKA 101
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BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Match: A0A3S2MWK8_ORYJA (Uncharacterized protein n=1 Tax=Oryzias javanicus TaxID=123683 RepID=A0A3S2MWK8_ORYJA)

HSP 1 Score: 52.0 bits (123), Expect = 1.890e-6
Identity = 29/52 (55.77%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:    1 VGQVLLENRADPNARD-MTGRTPLHRASRWGAPDCGLLLLDAGADIEARERA 153
            V QVLL + ADPN  D  TG TPLH A+R G  D   LL+ AGAD +AR++A
Sbjct:   50 VAQVLLRHGADPNVADESTGATPLHDAARTGFLDTVRLLVRAGADPQARDKA 101
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BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Match: A0A087Y1Y3_POEFO (Cyclin-dependent kinase 4 inhibitor B-like n=5 Tax=Poecilia TaxID=8080 RepID=A0A087Y1Y3_POEFO)

HSP 1 Score: 50.4 bits (119), Expect = 6.770e-6
Identity = 27/51 (52.94%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 VGQVLLENRADPNARDM-TGRTPLHRASRWGAPDCGLLLLDAGADIEARER 150
            V Q+LL + ADPN  D  TG TPLH A+R G  D   LL++AGAD +AR++
Sbjct:   50 VAQLLLTSGADPNVADRSTGATPLHDAARTGFLDTVKLLVEAGADRQARDK 100
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BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Match: UPI001FB63D72 (cyclin-dependent kinase inhibitor 2A n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB63D72)

HSP 1 Score: 48.5 bits (114), Expect = 3.870e-5
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 VGQVLLENRADPNARDM-TGRTPLHRASRWGAPDCGLLLLDAGADIEARE 147
            V + LL   ADPN +D  TG TPLH A+R G  D   LL+++GAD +AR+
Sbjct:   52 VAEALLSRGADPNVKDRSTGTTPLHDAARTGFVDTVRLLVESGADPQARD 101
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BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Match: UPI0009E5C24C (ankyrin repeat domain-containing protein 39-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E5C24C)

HSP 1 Score: 49.3 bits (116), Expect = 4.660e-5
Identity = 25/49 (51.02%), Postives = 32/49 (65.31%), Query Frame = 1 
Query:    7 QVLLENRADPNARDMTGRTPLHRASRWGAPDCGLLLLDAGADIEARERA 153
            + LL+   DP+ARD +G T LH ASR G  D   LLL+ GAD+ AR R+
Sbjct:   49 RTLLDKGGDPDARDGSGYTALHYASRSGYEDVCQLLLEQGADVNARTRS 97
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BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Match: A0A8H6KSC4_9PEZI (Ankyrin repeat protein n=1 Tax=Colletotrichum musicola TaxID=2175873 RepID=A0A8H6KSC4_9PEZI)

HSP 1 Score: 49.3 bits (116), Expect = 8.300e-5
Identity = 24/47 (51.06%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    1 VGQVLLENRADPNARDMTGRTPLHRASRWGAPDCGLLLLDAGADIEA 141
            V  ++LEN+A+PNA D  GRTPLH A+  G      +LLD GA+ EA
Sbjct:    3 VAMIMLENKANPNAADRWGRTPLHIAADLGQESAISILLDHGANPEA 49
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BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Match: A0A3M2SNV7_9HYPO (Uncharacterized protein n=1 Tax=Fusarium kuroshium TaxID=2010991 RepID=A0A3M2SNV7_9HYPO)

HSP 1 Score: 49.3 bits (116), Expect = 8.500e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    7 QVLLENRADPNARDMTGRTPLHRASRWGAPDCGLLLLDAGADIEAR 144
            ++LLEN ADPN R+  GRT LH A + G      +L+D GADI+AR
Sbjct:  428 ELLLENGADPNRREQHGRTALHIAVKHGYSSIVTMLVDHGADIDAR 473
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BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Match: A0A428PZV3_9HYPO (Uncharacterized protein n=1 Tax=Fusarium floridanum TaxID=1325733 RepID=A0A428PZV3_9HYPO)

HSP 1 Score: 49.3 bits (116), Expect = 8.580e-5
Identity = 24/46 (52.17%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:    7 QVLLENRADPNARDMTGRTPLHRASRWGAPDCGLLLLDAGADIEAR 144
            ++LLEN ADPN R+  GRT LH A + G      +L+D GADI+AR
Sbjct:  525 ELLLENGADPNRREQHGRTALHIAVKHGYSSIVTMLVDHGADIDAR 570
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig95041.18961.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A3Q2DH93_CYPVA1.100e-752.83Cyclin dependent kinase inhibitor 2B n=2 Tax=Cypri... [more]
A0A3B3BJG7_ORYME6.760e-755.77Cyclin-dependent kinase 4 inhibitor B-like n=2 Tax... [more]
A0A3S2MWK8_ORYJA1.890e-655.77Uncharacterized protein n=1 Tax=Oryzias javanicus ... [more]
A0A087Y1Y3_POEFO6.770e-652.94Cyclin-dependent kinase 4 inhibitor B-like n=5 Tax... [more]
UPI001FB63D723.870e-550.00cyclin-dependent kinase inhibitor 2A n=1 Tax=Mugil... [more]
UPI0009E5C24C4.660e-551.02ankyrin repeat domain-containing protein 39-like n... [more]
A0A8H6KSC4_9PEZI8.300e-551.06Ankyrin repeat protein n=1 Tax=Colletotrichum musi... [more]
A0A3M2SNV7_9HYPO8.500e-552.17Uncharacterized protein n=1 Tax=Fusarium kuroshium... [more]
A0A428PZV3_9HYPO8.580e-552.17Uncharacterized protein n=1 Tax=Fusarium floridanu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig95041contigF-distichus_contig95041:336..1523 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.5546007-CDS-F-distichus_contig95041:335..4881622931126.5546007-CDS-F-distichus_contig95041:335..488Fucus distichus monoicousCDSF-distichus_contig95041 336..488 +
1690886169.414701-CDS-F-distichus_contig95041:335..4881690886169.414701-CDS-F-distichus_contig95041:335..488Fucus distichus monoicousCDSF-distichus_contig95041 336..488 +
1622931126.568292-CDS-F-distichus_contig95041:1415..15231622931126.568292-CDS-F-distichus_contig95041:1415..1523Fucus distichus monoicousCDSF-distichus_contig95041 1416..1523 +
1690886169.4306948-CDS-F-distichus_contig95041:1415..15231690886169.4306948-CDS-F-distichus_contig95041:1415..1523Fucus distichus monoicousCDSF-distichus_contig95041 1416..1523 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig95041.18961.1prot_F-distichus_contig95041.18961.1Fucus distichus monoicouspolypeptideF-distichus_contig95041 336..1523 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig95041.18961.1

>prot_F-distichus_contig95041.18961.1 ID=prot_F-distichus_contig95041.18961.1|Name=mRNA_F-distichus_contig95041.18961.1|organism=Fucus distichus monoicous|type=polypeptide|length=87bp
VGQVLLENRADPNARDMTGRTPLHRASRWGAPDCGLLLLDAGADIEARER
AEMARTPLHYASRSGGIVTTIMLLDNGANPNAKTGS*
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mRNA from alignment at F-distichus_contig95041:336..1523+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig95041.18961.1 ID=mRNA_F-distichus_contig95041.18961.1|Name=mRNA_F-distichus_contig95041.18961.1|organism=Fucus distichus monoicous|type=mRNA|length=1188bp|location=Sequence derived from alignment at F-distichus_contig95041:336..1523+ (Fucus distichus monoicous)
GTGGGACAGGTGCTGCTGGAGAACCGTGCCGACCCTAACGCACGAGATAT
GACCGGGAGGACTCCCCTGCATCGTGCCTCCCGGTGGGGCGCGCCGGATT
GTGGCCTTCTCCTGCTGGACGCCGGCGCGGACATCGAGGCGAGAGAAAGA
GCTGTCGGAGCCAGCCGCTCCGTACTCTAGCCCAAGTTCGTCGTTTTGTT
TGTTTTATTTGTTTTTTATTTAAACGTATTCCCTGTCGGTCTGTGTTTTG
TCTGTCTTTGTTTTATCTGTCTTTTTCGTCTATGTGTTTTGTGTCATTTT
TTGTTTCGATTTTTGGTTGTATTTTTTTTCTTGCCTCGTGCATCGCAGCC
CGTGTCCCCACCTCAGCACCTCAGCACCTCAACACCTCACAACGAGTATA
GCTGTGAAGCTGAAAAGCAGAAAGCATCAGCGCCCAAGCGTGCGCGCCCA
TCGAAAACCCTGACGGAAAGACAGCGTGACGGCAGGCGTTTTTCGGGCGC
AACATCAGCCCCCCTCTCTCCCCGCGTCCCTCTCCTCTATAATATCTCTA
ATATCTCTAATATACTGTACTGAACACCACAAACCACAATTTTAACGAAT
GCGCCCCCCCCCCCCGAAGACATGCACCATCTCCCCCGCGGGGACATGCC
TTCCCCTCCCGTCCTCACTTTTTGTAACTTTTTGTCCTCGACAGTAGCAG
CTAATAATGTGAGGCTACTTGCGCGAAAGCTTACCGTTTATTTTAAACGA
ATGGTAAGCTTTCGATAAGATAGATCTTTTCCAACGCCGTACGACTGTGC
AGTGTGAGAGGTGGCTTTTCCATCAGGAGTTCCATCGCGAGGCGGGAGAC
AAACGGGGAGGCGTTGTCTCCGACCACTGCTATAACCTATACACAGTACT
CGTTTCTCTTCTCGTGTTTCGTTTTTCTTCTTCTTTTTTCTTCCCAACAA
AACGTTTTTTGAAGAACGCTCAGAAACTTGCCGAAGAACTGTGTCTGAAA
ACGCTCTTCCTGTGCCATGCAATCGGTCTCTTGGTCTTCCGCCACCGTCG
CCACCACCGTCGCCGCAGGCCCGAGACGAGGAAATGGCGCGGACGCCTTT
GCACTACGCCAGTAGATCAGGGGGGATCGTAACGACTATCATGCTCCTCG
ACAACGGGGCTAACCCCAACGCTAAGACTGGTTCGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig95041:336..1523+

>mRNA_F-distichus_contig95041.18961.1 ID=mRNA_F-distichus_contig95041.18961.1|Name=mRNA_F-distichus_contig95041.18961.1|organism=Fucus distichus monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at F-distichus_contig95041:336..1523+ (Fucus distichus monoicous)
GTGGGACAGGTGCTGCTGGAGAACCGTGCCGACCCTAACGCACGAGATAT
GACCGGGAGGACTCCCCTGCATCGTGCCTCCCGGTGGGGCGCGCCGGATT
GTGGCCTTCTCCTGCTGGACGCCGGCGCGGACATCGAGGCGAGAGAAAGA
GCTGTGGGACAGGTGCTGCTGGAGAACCGTGCCGACCCTAACGCACGAGA
TATGACCGGGAGGACTCCCCTGCATCGTGCCTCCCGGTGGGGCGCGCCGG
ATTGTGGCCTTCTCCTGCTGGACGCCGGCGCGGACATCGAGGCGAGAGAA
AGAGCTGAAATGGCGCGGACGCCTTTGCACTACGCCAGTAGATCAGGGGG
GATCGTAACGACTATCATGCTCCTCGACAACGGGGCTAACCCCAACGCTA
AGACTGGTTCGTGAGAAATGGCGCGGACGCCTTTGCACTACGCCAGTAGA
TCAGGGGGGATCGTAACGACTATCATGCTCCTCGACAACGGGGCTAACCC
CAACGCTAAGACTGGTTCGTGA
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