mRNA_F-distichus_contig95038.18960.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig95038.18960.1
Unique NamemRNA_F-distichus_contig95038.18960.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig95038.18960.1 vs. uniprot
Match: D7FIJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIJ8_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 3.670e-57
Identity = 124/271 (45.76%), Postives = 165/271 (60.89%), Query Frame = 1 
Query:    1 VTHIKRWQYKWLGEITESFMAEKATP-----GQVAEADRPSIPKESEEKGFDEKKEEKAQQGKT-PRKPLGQPRFSLDNKNIYQLRVEKRERKEMFRQRNVLGILPRKEPKPKRPGKRALKRKRLEERRIAERESKIV-YVGKERKREWYSKFLRILWPSEESIRLSNLGWESGMGMPCLTTTVFEGGFRKSGDNFYLNRVMTELKPLLSRWTGAVGMNRDDAMPHLNTYCRYRELKRSDGGFFLRR-GIGRVLVGTRGDEMTLWRGLTRR 789
            + ++ R  YKWLGEITESFMAEK +      G+ A  D      E EE    + ++++  +GK  P+KPLGQ +    +K I + R E+ ER+E   +RNVLGILP K+                         + ++ +VGKERKR W+ KFLR++WP+EE++R SNLGWESG GMPCLTTT++EGG+RK   N+ LNRVM ELKPLL  WTGA GM+R +AMPHLNTY RYREL R+DG   + + G+   L+ +       W  L  R
Sbjct:  503 IMNLSRRPYKWLGEITESFMAEKTSSKDGKNGKKAIRDIDVGLAEEEEMRRKKXEQDERNKGKNQPKKPLGQRKDPWGDKGILEKRKERAERREAIHRRNVLGILPPKKXXXXXXXXXXXXXXXXXXXXXXXXXAALIKWVGKERKRNWFMKFLRVVWPTEEAVRTSNLGWESGAGMPCLTTTLYEGGYRKCETNYQLNRVMEELKPLLCTWTGAKGMDRGNAMPHLNTYYRYRELPRTDGSLKMSKDGLAYFLLASHSLHRIAWGYLEHR 773
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig95038.18960.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIJ8_ECTSI3.670e-5745.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig95038contigF-distichus_contig95038:54..1894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.7
Seed ortholog evalue8.5e-52
Seed eggNOG ortholog2880.D7FIJ8
Preferred nameTDBP1
KEGG koko:K10862
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3'-tyrosyl-DNA phosphodiesterase activity
EggNOG OGsKOG2031@1,KOG2031@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03400
Exons3
Model size807
Cds size807
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig95038.18960.1prot_F-distichus_contig95038.18960.1Fucus distichus monoicouspolypeptideF-distichus_contig95038 54..1894 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.4551516-CDS-F-distichus_contig95038:53..3571622931126.4551516-CDS-F-distichus_contig95038:53..357Fucus distichus monoicousCDSF-distichus_contig95038 54..357 -
1690886169.3745725-CDS-F-distichus_contig95038:53..3571690886169.3745725-CDS-F-distichus_contig95038:53..357Fucus distichus monoicousCDSF-distichus_contig95038 54..357 -
1622931126.4755294-CDS-F-distichus_contig95038:1038..11721622931126.4755294-CDS-F-distichus_contig95038:1038..1172Fucus distichus monoicousCDSF-distichus_contig95038 1039..1172 -
1690886169.3924778-CDS-F-distichus_contig95038:1038..11721690886169.3924778-CDS-F-distichus_contig95038:1038..1172Fucus distichus monoicousCDSF-distichus_contig95038 1039..1172 -
1622931126.4925723-CDS-F-distichus_contig95038:1525..18941622931126.4925723-CDS-F-distichus_contig95038:1525..1894Fucus distichus monoicousCDSF-distichus_contig95038 1526..1894 -
1690886169.4034564-CDS-F-distichus_contig95038:1525..18941690886169.4034564-CDS-F-distichus_contig95038:1525..1894Fucus distichus monoicousCDSF-distichus_contig95038 1526..1894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig95038.18960.1

>prot_F-distichus_contig95038.18960.1 ID=prot_F-distichus_contig95038.18960.1|Name=mRNA_F-distichus_contig95038.18960.1|organism=Fucus distichus monoicous|type=polypeptide|length=269bp
VTHIKRWQYKWLGEITESFMAEKATPGQVAEADRPSIPKESEEKGFDEKK
EEKAQQGKTPRKPLGQPRFSLDNKNIYQLRVEKRERKEMFRQRNVLGILP
RKEPKPKRPGKRALKRKRLEERRIAERESKIVYVGKERKREWYSKFLRIL
WPSEESIRLSNLGWESGMGMPCLTTTVFEGGFRKSGDNFYLNRVMTELKP
LLSRWTGAVGMNRDDAMPHLNTYCRYRELKRSDGGFFLRRGIGRVLVGTR
GDEMTLWRGLTRRRRRPDR
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mRNA from alignment at F-distichus_contig95038:54..1894-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig95038.18960.1 ID=mRNA_F-distichus_contig95038.18960.1|Name=mRNA_F-distichus_contig95038.18960.1|organism=Fucus distichus monoicous|type=mRNA|length=1841bp|location=Sequence derived from alignment at F-distichus_contig95038:54..1894- (Fucus distichus monoicous)
GTAACACATATAAAACGTTGGCAGTACAAGTGGCTTGGGGAGATAACTGA
GTCCTTCATGGCCGAGAAGGCGACACCTGGGCAGGTCGCTGAGGCGGACA
GGCCTTCGATCCCCAAAGAATCGGAAGAGAAGGGGTTTGATGAGAAGAAG
GAAGAAAAGGCCCAACAGGGAAAGACGCCAAGGAAGCCGCTCGGCCAGCC
CCGTTTCTCCCTCGATAATAAGAACATCTATCAGTTGCGCGTGGAGAAAC
GGGAGAGAAAGGAGATGTTTCGACAAAGGAACGTGCTCGGGATCCTGCCT
CGCAAGGAGCCCAAGCCCAAGCGCCCGGGGAAGAGAGCGCTAAAGAGGAA
GAGGCTGGAAGAGCGACGGGTACTTTTCTTTTATCCTTTTTAGTTATGGT
CCACCTGGTAGTCATTTACTTCATACCTTTTGTACTATAGTTCTTATTTA
TTTTTGTTGTTGTGTGTCTGTGTGTGTGTGTGTGTCTGTCTGTGTGTGTG
TGTGTGTGCTCCTTTTTAGTTACACGGACCTGTTAAGGTAACGTCCTTTT
AGTAACGTCCTTTTAGTAGACTTTTATGAAAGCTGAGTGCACGTTTCGGA
TCTGGAACGCGGGCTTTTGTTCCCACACACTGGCTTAGCGGTTTGTTTGT
TGGTTTGTTCTCTCACATTGACCTAGCGGTTTGTTTTTGTGTTTGGGGTG
GGGGGTGGGATGGATCGAACAGATCGCGGAGAGAGAAAGCAAGATCGTGT
ACGTCGGGAAGGAGAGAAAGAGGGAATGGTACTCCAAGTTTCTGCGGATC
CTGTGGCCGTCCGAGGAGTCCATCCGCCTCTCCAACCTCGGATGGGAATC
GGGAATGTAAGTGTATAGTGTATAGTGTGTAGTGTATAGTGTGTAGTGTG
TAGTGGAAGAGAAGGCCCTCGCTCCACGAATTGACTGCATAGGGAAATAG
GATGTCGAGCCACTGTACCAGGTATTTTTGCGTATGTGTGTGTGTAGGTG
TGTCTTCTGGATCTGTTTCTTTCTTTTTAGGAGTCTTTCGATGAACGTCA
TCCTACAGCTGTAGGTATGTTTTGTCTTGCATGGACCCAGCACGAAATGG
ATAAAGTGATCCTATCCTTCGCGTCAGCCCCCCCCCCCCCGTGGCTCTTG
GACGCTTTTTTTTCTTATTTTTGTGTTATTTATGTAGAGTACTTATGCAC
TTCGCACTCATTTCGTCTTTGTTATTGTTCTATTTTCAAGCTATTACTAC
TGTCAAGAGTATTGTAGTAATGACCATTCCACGTTATAAATACTAATATT
AATAGCGATATCAATGAGGTACCGGTACTCGTGGGCATCGCCCGTTTGCC
GCTTTCAGTGAGGTAGGTCATGCATGCCCCATCAAGAGCTGCAGCTAGCT
CCACACAAAATGTACACTGTACGCTGTCATCCTCCAGACTAAATATGTGC
CAAGATAAAACGTCGACCACCATGCACCGCCGAACCCTACTCTAACCTCG
TCCGTCCCCCTCCACTTCCCCCTCCCCATTCGTTCAGGGGCATGCCGTGC
CTCACGACGACGGTGTTCGAGGGCGGTTTCCGCAAGTCCGGCGATAATTT
CTATCTGAACCGCGTTATGACCGAGCTGAAGCCCCTGCTCTCCAGGTGGA
CCGGTGCCGTGGGGATGAACCGAGACGATGCCATGCCGCACCTGAATACC
TACTGCCGTTACCGGGAGCTAAAGAGGAGCGATGGTGGGTTTTTTCTCAG
GCGCGGCATTGGGCGTGTTCTGGTTGGGACGAGAGGGGATGAAATGACCT
TGTGGAGAGGTCTGACGCGGCGGCGGCGGCGTCCTGATCGC
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Coding sequence (CDS) from alignment at F-distichus_contig95038:54..1894-

>mRNA_F-distichus_contig95038.18960.1 ID=mRNA_F-distichus_contig95038.18960.1|Name=mRNA_F-distichus_contig95038.18960.1|organism=Fucus distichus monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at F-distichus_contig95038:54..1894- (Fucus distichus monoicous)
GTAACACATATAAAACGTTGGCAGTACAAGTGGCTTGGGGAGATAACTGA
GTCCTTCATGGCCGAGAAGGCGACACCTGGGCAGGTCGCTGAGGCGGACA
GGCCTTCGATCCCCAAAGAATCGGAAGAGAAGGGGTTTGATGAGAAGAAG
GAAGAAAAGGCCCAACAGGGAAAGACGCCAAGGAAGCCGCTCGGCCAGCC
CCGTTTCTCCCTCGATAATAAGAACATCTATCAGTTGCGCGTGGAGAAAC
GGGAGAGAAAGGAGATGTTTCGACAAAGGAACGTGCTCGGGATCCTGCCT
CGCAAGGAGCCCAAGCCCAAGCGCCCGGGGAAGAGAGCGCTAAAGAGGAA
GAGGCTGGAAGAGCGACGGGTAACACATATAAAACGTTGGCAGTACAAGT
GGCTTGGGGAGATAACTGAGTCCTTCATGGCCGAGAAGGCGACACCTGGG
CAGGTCGCTGAGGCGGACAGGCCTTCGATCCCCAAAGAATCGGAAGAGAA
GGGGTTTGATGAGAAGAAGGAAGAAAAGGCCCAACAGGGAAAGACGCCAA
GGAAGCCGCTCGGCCAGCCCCGTTTCTCCCTCGATAATAAGAACATCTAT
CAGTTGCGCGTGGAGAAACGGGAGAGAAAGGAGATGTTTCGACAAAGGAA
CGTGCTCGGGATCCTGCCTCGCAAGGAGCCCAAGCCCAAGCGCCCGGGGA
AGAGAGCGCTAAAGAGGAAGAGGCTGGAAGAGCGACGGATCGCGGAGAGA
GAAAGCAAGATCGTGTACGTCGGGAAGGAGAGAAAGAGGGAATGGTACTC
CAAGTTTCTGCGGATCCTGTGGCCGTCCGAGGAGTCCATCCGCCTCTCCA
ACCTCGGATGGGAATCGGGAATATCGCGGAGAGAGAAAGCAAGATCGTGT
ACGTCGGGAAGGAGAGAAAGAGGGAATGGTACTCCAAGTTTCTGCGGATC
CTGTGGCCGTCCGAGGAGTCCATCCGCCTCTCCAACCTCGGATGGGAATC
GGGAATGGGCATGCCGTGCCTCACGACGACGGTGTTCGAGGGCGGTTTCC
GCAAGTCCGGCGATAATTTCTATCTGAACCGCGTTATGACCGAGCTGAAG
CCCCTGCTCTCCAGGTGGACCGGTGCCGTGGGGATGAACCGAGACGATGC
CATGCCGCACCTGAATACCTACTGCCGTTACCGGGAGCTAAAGAGGAGCG
ATGGTGGGTTTTTTCTCAGGCGCGGCATTGGGCGTGTTCTGGTTGGGACG
AGAGGGGATGAAATGACCTTGTGGAGAGGTCTGACGCGGCGGCGGCGGCG
TCCTGATCGCGGGCATGCCGTGCCTCACGACGACGGTGTTCGAGGGCGGT
TTCCGCAAGTCCGGCGATAATTTCTATCTGAACCGCGTTATGACCGAGCT
GAAGCCCCTGCTCTCCAGGTGGACCGGTGCCGTGGGGATGAACCGAGACG
ATGCCATGCCGCACCTGAATACCTACTGCCGTTACCGGGAGCTAAAGAGG
AGCGATGGTGGGTTTTTTCTCAGGCGCGGCATTGGGCGTGTTCTGGTTGG
GACGAGAGGGGATGAAATGACCTTGTGGAGAGGTCTGACGCGGCGGCGGC
GGCGTCCTGATCGC
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