mRNA_F-distichus_contig95037.18959.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig95037.18959.1
Unique NamemRNA_F-distichus_contig95037.18959.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig95037.18959.1 vs. uniprot
Match: D7G2R5_ECTSI (DUF2040 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2R5_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 9.960e-30
Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 1 
Query:   19 GKAKPIGSKPPPRRRPAGSTAVFDVDSD-EDRGPQEDPRGVAAVNKRLSAISAKQERQAKKNFEDALQADPSVFDYDSVYDGMK 267
            G+ +PIGSKP PRRRPAGST+VFD +SD E+   + D  GV AVNKRL+AISAKQE+QAKK +EDALQADPSVFDYD VYDGMK
Sbjct:   29 GRGRPIGSKPAPRRRPAGSTSVFDANSDDEEEDSKGDLSGVTAVNKRLAAISAKQEKQAKKEYEDALQADPSVFDYDRVYDGMK 112
[Close]
BLAST of mRNA_F-distichus_contig95037.18959.1 vs. uniprot
Match: A0A835YZI8_9STRA (Coiled-coil domain-containing protein 55-domain containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 3.530e-8
Identity = 37/72 (51.39%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:   52 PRRRPAGSTAV--FDVDSDEDRGP-QEDPRGVAAVNKRLSAISAKQERQAKKNFEDALQADPSVFDYDSVYD 258
            PR+ PA   AV  F  DSD D G   EDP   AAVN+RL+A  A++ R+ +K    A+  DPSVFDYD VYD
Sbjct:   26 PRKAPARGPAVAAFGDDSDSDGGAGAEDPTSRAAVNRRLAAEQAERARRMEKVAVQAVMDDPSVFDYDGVYD 97
[Close]
BLAST of mRNA_F-distichus_contig95037.18959.1 vs. uniprot
Match: W7TFP5_9STRA (DUF2040 domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFP5_9STRA)

HSP 1 Score: 52.0 bits (123), Expect = 1.100e-5
Identity = 32/81 (39.51%), Postives = 46/81 (56.79%), Query Frame = 1 
Query:   19 GKAKPIGSKPPPRRRPAGSTAVFDVDSDEDRGPQEDP-RGVAAVNKRLSAISAKQERQAKKNFEDALQADPSVFDYDSVYD 258
            G+ +P  + P   RRPAGS    D D  +D G +ED     A+ NK L A S K ++  ++    A  +DPS++DYD+VYD
Sbjct:   26 GRPRPASAAP---RRPAGSAFSLDDDDSDDNGQEEDGLASKASFNKMLQAQSIKAQKSLEEAEAAARASDPSIYDYDAVYD 103
[Close]
BLAST of mRNA_F-distichus_contig95037.18959.1 vs. uniprot
Match: A0A1Y1YCI8_9FUNG (DUF2040 domain-containing protein n=1 Tax=Basidiobolus meristosporus CBS 931.73 TaxID=1314790 RepID=A0A1Y1YCI8_9FUNG)

HSP 1 Score: 49.7 bits (117), Expect = 7.130e-5
Identity = 26/64 (40.62%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   76 TAVFDVDSDEDRGPQEDPRGVAAVNKRLSAISAKQERQAKKNFEDALQADPSVFDYDSVYDGMK 267
            T++F+ D D++  P      V+  NK L+   + + ++ KK  E+AL+ D SVFDYD VYD MK
Sbjct:   29 TSIFNNDEDDEEVPAS---SVSVTNKELARNFSFESKKTKKQQEEALEIDSSVFDYDGVYDEMK 89
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig95037.18959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G2R5_ECTSI9.960e-3073.81DUF2040 domain-containing protein n=2 Tax=Ectocarp... [more]
A0A835YZI8_9STRA3.530e-851.39Coiled-coil domain-containing protein 55-domain co... [more]
W7TFP5_9STRA1.100e-539.51DUF2040 domain-containing protein n=2 Tax=Monodops... [more]
A0A1Y1YCI8_9FUNG7.130e-540.63DUF2040 domain-containing protein n=1 Tax=Basidiob... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig95037contigF-distichus_contig95037:1764..2039 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score120.2
Seed ortholog evalue5.2e-25
Seed eggNOG ortholog2880.D7G2R5
Preferred nameNSRP1
KEGG koko:K07752,ko:K11414,ko:K13206,ko:K14437,ko:K20526
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000381,GO:0000398,GO:0002119,GO:0002164,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006928,GO:0007275,GO:0008150,GO:0008152,GO:0008380,GO:0009791,GO:0009987,GO:0010467,GO:0010468,GO:0016070,GO:0016071,GO:0016477,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0031323,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0040011,GO:0040039,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043484,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045292,GO:0046483,GO:0048024,GO:0048856,GO:0048870,GO:0050684,GO:0050789,GO:0050794,GO:0051171,GO:0051179,GO:0051252,GO:0051674,GO:0060255,GO:0065007,GO:0070013,GO:0071704,GO:0080090,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1903311,GO:1990904
EggNOG free text desc.mRNA binding
EggNOG OGsKOG2117@1,KOG2117@2759
EC3.4.17.22,3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03036,ko03041,ko04131
Exons1
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.4103792-CDS-F-distichus_contig95037:1763..20391622931126.4103792-CDS-F-distichus_contig95037:1763..2039Fucus distichus monoicousCDSF-distichus_contig95037 1764..2039 +
1690886169.3491788-CDS-F-distichus_contig95037:1763..20391690886169.3491788-CDS-F-distichus_contig95037:1763..2039Fucus distichus monoicousCDSF-distichus_contig95037 1764..2039 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig95037.18959.1prot_F-distichus_contig95037.18959.1Fucus distichus monoicouspolypeptideF-distichus_contig95037 1764..2039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig95037.18959.1

>prot_F-distichus_contig95037.18959.1 ID=prot_F-distichus_contig95037.18959.1|Name=mRNA_F-distichus_contig95037.18959.1|organism=Fucus distichus monoicous|type=polypeptide|length=92bp
SLKNEGGKAKPIGSKPPPRRRPAGSTAVFDVDSDEDRGPQEDPRGVAAVN
KRLSAISAKQERQAKKNFEDALQADPSVFDYDSVYDGMKNR*
back to top

mRNA from alignment at F-distichus_contig95037:1764..2039+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig95037.18959.1 ID=mRNA_F-distichus_contig95037.18959.1|Name=mRNA_F-distichus_contig95037.18959.1|organism=Fucus distichus monoicous|type=mRNA|length=276bp|location=Sequence derived from alignment at F-distichus_contig95037:1764..2039+ (Fucus distichus monoicous)
TCCTTGAAAAATGAGGGAGGAAAGGCAAAACCCATCGGATCTAAGCCTCC
ACCGCGGCGCCGACCGGCCGGTTCAACGGCAGTGTTTGACGTCGATTCGG
ATGAGGACAGGGGGCCTCAAGAGGATCCCCGAGGGGTGGCGGCGGTAAAC
AAGAGACTGTCGGCTATATCTGCGAAGCAGGAGAGACAGGCCAAGAAGAA
CTTCGAGGATGCTCTACAGGCCGACCCTAGTGTATTCGACTATGACAGTG
TTTACGACGGAATGAAAAACAGGTAA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig95037:1764..2039+

>mRNA_F-distichus_contig95037.18959.1 ID=mRNA_F-distichus_contig95037.18959.1|Name=mRNA_F-distichus_contig95037.18959.1|organism=Fucus distichus monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at F-distichus_contig95037:1764..2039+ (Fucus distichus monoicous)
TCCTTGAAAAATGAGGGAGGAAAGGCAAAACCCATCGGATCTAAGCCTCC
ACCGCGGCGCCGACCGGCCGGTTCAACGGCAGTGTTTGACGTCGATTCGG
ATGAGGACAGGGGGCCTCAAGAGGATCCCCGAGGGGTGGCGGCGGTAAAC
AAGAGACTGTCGGCTATATCTGCGAAGCAGGAGAGACAGGCCAAGAAGAA
CTTCGAGGATGCTCTACAGGCCGACCCTAGTGTATTCGACTATGACAGTG
TTTACGACGGAATGAAAAACAGGTAATCCTTGAAAAATGAGGGAGGAAAG
GCAAAACCCATCGGATCTAAGCCTCCACCGCGGCGCCGACCGGCCGGTTC
AACGGCAGTGTTTGACGTCGATTCGGATGAGGACAGGGGGCCTCAAGAGG
ATCCCCGAGGGGTGGCGGCGGTAAACAAGAGACTGTCGGCTATATCTGCG
AAGCAGGAGAGACAGGCCAAGAAGAACTTCGAGGATGCTCTACAGGCCGA
CCCTAGTGTATTCGACTATGACAGTGTTTACGACGGAATGAAAAACAGGT
AA
back to top