mRNA_F-distichus_contig107875.674.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107875.674.1
Unique NamemRNA_F-distichus_contig107875.674.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig107875.674.1 vs. uniprot
Match: D7FK14_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK14_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 6.360e-44
Identity = 77/102 (75.49%), Postives = 85/102 (83.33%), Query Frame = 1 
Query:    1 SRYSKGRVDVEHLGPRTKIVWNKAQPPLTSKLHDFCTLMHVEPLAD--GSFMLVTRATEHPQARATAEAPLLDGHVRSEILLGVTILRPVDDGCASRTEMTT 300
            +RYSKGR D+EHLGP TKIVWNKAQPPL+ KLHDFCTLMH++PL D  GSFML+TRATEHP+A      PLLDGHVRSEILLGVTILRP   G  +RTEMTT
Sbjct:  114 NRYSKGRTDIEHLGPHTKIVWNKAQPPLSKKLHDFCTLMHMQPLDDEEGSFMLITRATEHPKA------PLLDGHVRSEILLGVTILRPAK-GDPTRTEMTT 208
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BLAST of mRNA_F-distichus_contig107875.674.1 vs. uniprot
Match: A0A835Z8H4_9STRA (START domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8H4_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.150e-27
Identity = 54/96 (56.25%), Postives = 67/96 (69.79%), Query Frame = 1 
Query:    1 SRYSKGRVDVEHLGPRTKIVWNKAQPPLTSKLHDFCTLMHVEPLADGSFMLVTRATEHPQARATAEAPLLDGHVRSEILLGVTILRPVDDGCASRT 288
            +RYS+GR DV  LGP TKIVWN+ QPPLT K+HDFCTLMHV+    G   + TRAT+H +A      P L G VRSEI+LGVT++ P+  G A+ T
Sbjct:   77 NRYSRGRDDVARLGPHTKIVWNRTQPPLTGKVHDFCTLMHVDRRDGGGATVTTRATDHERA------PRLRGAVRSEIVLGVTVVEPLAPGRATVT 166
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BLAST of mRNA_F-distichus_contig107875.674.1 vs. uniprot
Match: A0A4D9DEU8_9STRA (START domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DEU8_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.280e-20
Identity = 50/106 (47.17%), Postives = 66/106 (62.26%), Query Frame = 1 
Query:    1 SRYSKGRVDVEHLGPRTKIVWNKAQPPLTSKLHDFCTLMHVEPLADGSFMLVTRATEHPQARATAEAPLLDGHVRSEILLGVTILRP--VDDGCASRTEMTTVRGA 312
            ++YSKGR DV  +GP TKIVWN+  PPL  K H+FCT+MHV    DGS +++T+ T+HP      E P      RSEI+LGVT +RP   D   A  T ++ V+ A
Sbjct:  281 NKYSKGRDDVARVGPHTKIVWNRTLPPLQKKAHEFCTIMHVVRRPDGSQVMLTKFTDHP------EVPRSSRFARSEIILGVTEVRPHPTDPNRAHLTTISHVKSA 380
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BLAST of mRNA_F-distichus_contig107875.674.1 vs. uniprot
Match: A0A6U6KS53_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6KS53_9STRA)

HSP 1 Score: 55.8 bits (133), Expect = 8.100e-7
Identity = 42/102 (41.18%), Postives = 59/102 (57.84%), Query Frame = 1 
Query:   25 DVEHLGPR----TKIVWNKAQPPLTSKLHDFCTLMHVEPLADGS-FMLVTRATEHPQARATAEAPLLDGHV-RSEILLGVTILRPV--DDGCASRTEMTTVR 306
            D+E+ GP     TK+V + ++PPL  K  +F TLMHV  L DG+ +++V+RA    +     EA   DG V RSEIL+GV I+R V  DD  A    +  +R
Sbjct:  345 DLENDGPFGQSITKVVRSASKPPLVRKSLEFVTLMHVRKLEDGNGYLIVSRAVTQAE-----EAINSDGKVMRSEILMGVNIIRNVEGDDNRAIMINVNHIR 441
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BLAST of mRNA_F-distichus_contig107875.674.1 vs. uniprot
Match: B7G311_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G311_PHATC)

HSP 1 Score: 53.5 bits (127), Expect = 5.140e-6
Identity = 35/89 (39.33%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:   49 TKIVWNKAQPPLTSKLHDFCTLMHVEPLADGSFMLVTRATE----HPQARATAEAPLLDGHVRSEILLGVTILRPVDDGCASRTEMTTV 303
            +KIV N+ QPPL SK+    TL+H + L DG++MLV+RA      H  +   A         +S+ILLGV +L P  D  +  T +T V
Sbjct:  295 SKIVRNRTQPPLGSKVMVATTLLHAQQLDDGAWMLVSRAVGGDVYHDSSDKNAS--------KSDILLGVNLLEPYSDHSSVLTAVTHV 375
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BLAST of mRNA_F-distichus_contig107875.674.1 vs. uniprot
Match: A0A7S2K4D5_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K4D5_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 5.410e-6
Identity = 42/123 (34.15%), Postives = 61/123 (49.59%), Query Frame = 1 
Query:    1 SRYSKGRVDV-----------EHLGPRTKIVWNKAQPPLTSKLHDFCTLMHVEPL----ADGS-FMLVTRATEHPQARATAEAPLLDGHV------RSEILLGVTILRPVDDGCASRTEMTTV 303
            ++ S GR DV           E      K+V N  +PPLT +  +F TLMH   L     +G  +++V+RA      R  AE P     V      RSEILLGV +LR ++ G  ++T++T+V
Sbjct:  103 NKMSLGRTDVKVFQAGVDAVGEFGDGEAKVVQNLTKPPLTKRTLEFVTLMHARKLNPDHGEGEGYLVVSRAVNDRLERDAAENPTTASDVTTMERLRSEILLGVNVLRAIE-GEPNKTDLTSV 224
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107875.674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FK14_ECTSI6.360e-4475.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z8H4_9STRA2.150e-2756.25START domain-containing protein (Fragment) n=1 Tax... [more]
A0A4D9DEU8_9STRA1.280e-2047.17START domain-containing protein n=2 Tax=Monodopsid... [more]
A0A6U6KS53_9STRA8.100e-741.18Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
B7G311_PHATC5.140e-639.33Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A7S2K4D5_9STRA5.410e-634.15Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107875contigF-distichus_contig107875:423..1160 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue2.5e-07
Seed eggNOG ortholog2880.D7G2E9
KEGG koko:K10779
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG2761@1,KOG2761@2759
EC3.6.4.12
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03000,ko03036
Exons2
Model size318
Cds size318
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929013.1156662-CDS-F-distichus_contig107875:422..5421622929013.1156662-CDS-F-distichus_contig107875:422..542Fucus distichus monoicousCDSF-distichus_contig107875 423..542 -
1690885106.9639273-CDS-F-distichus_contig107875:422..5421690885106.9639273-CDS-F-distichus_contig107875:422..542Fucus distichus monoicousCDSF-distichus_contig107875 423..542 -
1622929013.2338796-CDS-F-distichus_contig107875:962..11601622929013.2338796-CDS-F-distichus_contig107875:962..1160Fucus distichus monoicousCDSF-distichus_contig107875 963..1160 -
1690885106.9790514-CDS-F-distichus_contig107875:962..11601690885106.9790514-CDS-F-distichus_contig107875:962..1160Fucus distichus monoicousCDSF-distichus_contig107875 963..1160 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107875.674.1prot_F-distichus_contig107875.674.1Fucus distichus monoicouspolypeptideF-distichus_contig107875 423..1160 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107875.674.1

>prot_F-distichus_contig107875.674.1 ID=prot_F-distichus_contig107875.674.1|Name=mRNA_F-distichus_contig107875.674.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
SRYSKGRVDVEHLGPRTKIVWNKAQPPLTSKLHDFCTLMHVEPLADGSFM
LVTRATEHPQARATAEAPLLDGHVRSEILLGVTILRPVDDGCASRTEMTT
VRGAP*
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mRNA from alignment at F-distichus_contig107875:423..1160-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107875.674.1 ID=mRNA_F-distichus_contig107875.674.1|Name=mRNA_F-distichus_contig107875.674.1|organism=Fucus distichus monoicous|type=mRNA|length=738bp|location=Sequence derived from alignment at F-distichus_contig107875:423..1160- (Fucus distichus monoicous)
TCCAGGTATAGCAAAGGGCGTGTGGACGTCGAGCACTTGGGACCCCGCAC
GAAAATCGTGTGGAACAAGGCCCAGCCGCCGCTGACGAGCAAGCTGCATG
ACTTCTGTACCCTCATGCACGTGGAACCGCTGGCTGACGGTTCGTTTATG
CTTGTCACCCGGGCCACCGAACATCCGCAGGCGAGAGCGACGGCGGAGGT
CGCAGGAAAATAATGCGTATGCGAGAACCTGGGCCTGAATCGGATCCGTG
GTTTTTCAGTGTACCTTTCGAGGCGTTTTGGGTTGTTTACCGCAGGGTGG
GGCCGGAGGAGTGGGGAGAAGAAGCTTTATGTATAGCTCTACACGTCCTA
TTGTGGGTGTTTCCCGCGAGGAGAGTTATGAATGGCTTTCGAAGCCGCGA
CCTCTGGTCACAATTTCAACTCTTATGTATACTTTTCTGTCCGTGCATGC
CGGTGTGAATCTGTTGGATTGGTATCTGGGGGTGCGCTCAGCACCCCGAA
TGGAGTGAACGTGTTGCTGCTGTCCTTGAATACCCGCGGTGACACAGCAT
TCGTCGCGTGTTTGCTGTTTTCGAAAACACTGATTCCGTGTCCTCCGTCT
CGTGCTCCCGCCCGGAAGGCTCCGCTGCTGGATGGCCACGTGAGGAGCGA
AATCCTCCTGGGCGTCACCATATTGAGGCCTGTCGACGACGGGTGTGCTT
CCAGGACCGAGATGACAACGGTACGAGGGGCGCCCTAG
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Coding sequence (CDS) from alignment at F-distichus_contig107875:423..1160-

>mRNA_F-distichus_contig107875.674.1 ID=mRNA_F-distichus_contig107875.674.1|Name=mRNA_F-distichus_contig107875.674.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig107875:423..1160- (Fucus distichus monoicous)
TCCAGGTATAGCAAAGGGCGTGTGGACGTCGAGCACTTGGGACCCCGCAC
GAAAATCGTGTGGAACAAGGCCCAGCCGCCGCTGACGAGCAAGCTGCATG
ACTTCTGTACCCTCATGCACGTGGAACCGCTGGCTGACGGTTCGTTTATG
CTTGTCACCCGGGCCACCGAACATCCGCAGGCGAGAGCGACGGCGGAGTC
CAGGTATAGCAAAGGGCGTGTGGACGTCGAGCACTTGGGACCCCGCACGA
AAATCGTGTGGAACAAGGCCCAGCCGCCGCTGACGAGCAAGCTGCATGAC
TTCTGTACCCTCATGCACGTGGAACCGCTGGCTGACGGTTCGTTTATGCT
TGTCACCCGGGCCACCGAACATCCGCAGGCGAGAGCGACGGCGGAGGCTC
CGCTGCTGGATGGCCACGTGAGGAGCGAAATCCTCCTGGGCGTCACCATA
TTGAGGCCTGTCGACGACGGGTGTGCTTCCAGGACCGAGATGACAACGGT
ACGAGGGGCGCCCTAGGCTCCGCTGCTGGATGGCCACGTGAGGAGCGAAA
TCCTCCTGGGCGTCACCATATTGAGGCCTGTCGACGACGGGTGTGCTTCC
AGGACCGAGATGACAACGGTACGAGGGGCGCCCTAG
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