mRNA_F-distichus_contig107843.670.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107843.670.1
Unique NamemRNA_F-distichus_contig107843.670.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig107843.670.1 vs. uniprot
Match: A0A6H5K843_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K843_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 8.280e-23
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 MLLNTSLSAKLQSPGNRIDLKDRRMARGAGAPRPNPAPCLNPSENLDMIVEQTLEELGMHTLRV 192
            +L+N SLSAKLQSP  R+DL+DRR ARGA   RPNPAP L+PSENLDMIVE TLEELG HTLRV
Sbjct:   88 VLVNASLSAKLQSPTGRVDLEDRRTARGASVSRPNPAPLLSPSENLDMIVEHTLEELGTHTLRV 151
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BLAST of mRNA_F-distichus_contig107843.670.1 vs. uniprot
Match: D8LQ16_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ16_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.370e-22
Identity = 49/64 (76.56%), Postives = 54/64 (84.38%), Query Frame = 1 
Query:    1 MLLNTSLSAKLQSPGNRIDLKDRRMARGAGAPRPNPAPCLNPSENLDMIVEQTLEELGMHTLRV 192
            +L+N SLSAKLQSP  R+DL+DRR ARGA   RPNPAP L+PSENLDMIVE TLEELG HTLRV
Sbjct:   88 VLVNASLSAKLQSPTGRVDLEDRRTARGASVSRPNPAPLLSPSENLDMIVEHTLEELGTHTLRV 151
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107843.670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K843_9PHAE8.280e-2376.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LQ16_ECTSI1.370e-2276.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107843contigF-distichus_contig107843:927..1118 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.4
Seed ortholog evalue6.6e-19
Seed eggNOG ortholog2880.D8LQ16
KEGG koko:K06671,ko:K20310
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Protein of unknown function (DUF974)
EggNOG OGsKOG2625@1,KOG2625@2759
Ec32 ortholog descriptionProtein of unknown function DUF974
Ec32 orthologEc-15_001310.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04131
Exons1
Model size192
Cds size192
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.585958-CDS-F-distichus_contig107843:926..11181622929012.585958-CDS-F-distichus_contig107843:926..1118Fucus distichus monoicousCDSF-distichus_contig107843 927..1118 +
1690885105.414566-CDS-F-distichus_contig107843:926..11181690885105.414566-CDS-F-distichus_contig107843:926..1118Fucus distichus monoicousCDSF-distichus_contig107843 927..1118 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107843.670.1prot_F-distichus_contig107843.670.1Fucus distichus monoicouspolypeptideF-distichus_contig107843 927..1118 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107843.670.1

>prot_F-distichus_contig107843.670.1 ID=prot_F-distichus_contig107843.670.1|Name=mRNA_F-distichus_contig107843.670.1|organism=Fucus distichus monoicous|type=polypeptide|length=64bp
MLLNTSLSAKLQSPGNRIDLKDRRMARGAGAPRPNPAPCLNPSENLDMIV
EQTLEELGMHTLRV
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mRNA from alignment at F-distichus_contig107843:927..1118+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107843.670.1 ID=mRNA_F-distichus_contig107843.670.1|Name=mRNA_F-distichus_contig107843.670.1|organism=Fucus distichus monoicous|type=mRNA|length=192bp|location=Sequence derived from alignment at F-distichus_contig107843:927..1118+ (Fucus distichus monoicous)
ATGCTGCTGAACACGTCCCTGTCGGCGAAGCTACAGTCCCCCGGCAACCG
GATAGATCTGAAAGACAGAAGGATGGCCAGGGGTGCCGGCGCGCCCAGGC
CAAACCCGGCGCCTTGCCTCAACCCGTCGGAAAACTTGGACATGATCGTG
GAGCAAACGCTGGAGGAGCTGGGCATGCACACGCTGAGGGTG
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Coding sequence (CDS) from alignment at F-distichus_contig107843:927..1118+

>mRNA_F-distichus_contig107843.670.1 ID=mRNA_F-distichus_contig107843.670.1|Name=mRNA_F-distichus_contig107843.670.1|organism=Fucus distichus monoicous|type=CDS|length=384bp|location=Sequence derived from alignment at F-distichus_contig107843:927..1118+ (Fucus distichus monoicous)
ATGCTGCTGAACACGTCCCTGTCGGCGAAGCTACAGTCCCCCGGCAACCG
GATAGATCTGAAAGACAGAAGGATGGCCAGGGGTGCCGGCGCGCCCAGGC
CAAACCCGGCGCCTTGCCTCAACCCGTCGGAAAACTTGGACATGATCGTG
GAGCAAACGCTGGAGGAGCTGGGCATGCACACGCTGAGGGTGATGCTGCT
GAACACGTCCCTGTCGGCGAAGCTACAGTCCCCCGGCAACCGGATAGATC
TGAAAGACAGAAGGATGGCCAGGGGTGCCGGCGCGCCCAGGCCAAACCCG
GCGCCTTGCCTCAACCCGTCGGAAAACTTGGACATGATCGTGGAGCAAAC
GCTGGAGGAGCTGGGCATGCACACGCTGAGGGTG
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