mRNA_F-distichus_contig107787.664.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107787.664.1
Unique NamemRNA_F-distichus_contig107787.664.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig107787.664.1 vs. uniprot
Match: D8LSD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSD6_ECTSI)

HSP 1 Score: 50.8 bits (120), Expect = 6.240e-6
Identity = 22/24 (91.67%), Postives = 24/24 (100.00%), Query Frame = 1 
Query:    7 MSISKELHDELCTSYASMALYDGD 78
            MSISKELHDELCTSYA++ALYDGD
Sbjct:    1 MSISKELHDELCTSYAALALYDGD 24
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107787.664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSD6_ECTSI6.240e-691.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107787contigF-distichus_contig107787:1419..1706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size288
Cds size117
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107787.664.1prot_F-distichus_contig107787.664.1Fucus distichus monoicouspolypeptideF-distichus_contig107787 1425..1541 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929011.939573-UTR-F-distichus_contig107787:1418..14241622929011.939573-UTR-F-distichus_contig107787:1418..1424Fucus distichus monoicousUTRF-distichus_contig107787 1419..1424 +
1690885105.1563349-UTR-F-distichus_contig107787:1418..14241690885105.1563349-UTR-F-distichus_contig107787:1418..1424Fucus distichus monoicousUTRF-distichus_contig107787 1419..1424 +
1622929011.9670188-UTR-F-distichus_contig107787:1541..17061622929011.9670188-UTR-F-distichus_contig107787:1541..1706Fucus distichus monoicousUTRF-distichus_contig107787 1542..1706 +
1690885105.1804533-UTR-F-distichus_contig107787:1541..17061690885105.1804533-UTR-F-distichus_contig107787:1541..1706Fucus distichus monoicousUTRF-distichus_contig107787 1542..1706 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929011.9533515-CDS-F-distichus_contig107787:1424..15411622929011.9533515-CDS-F-distichus_contig107787:1424..1541Fucus distichus monoicousCDSF-distichus_contig107787 1425..1541 +
1690885105.1685977-CDS-F-distichus_contig107787:1424..15411690885105.1685977-CDS-F-distichus_contig107787:1424..1541Fucus distichus monoicousCDSF-distichus_contig107787 1425..1541 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107787.664.1

>prot_F-distichus_contig107787.664.1 ID=prot_F-distichus_contig107787.664.1|Name=mRNA_F-distichus_contig107787.664.1|organism=Fucus distichus monoicous|type=polypeptide|length=39bp
MSISKELHDELCTSYASMALYDGDVSYAETVVQLSFQW*
back to top

mRNA from alignment at F-distichus_contig107787:1419..1706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107787.664.1 ID=mRNA_F-distichus_contig107787.664.1|Name=mRNA_F-distichus_contig107787.664.1|organism=Fucus distichus monoicous|type=mRNA|length=288bp|location=Sequence derived from alignment at F-distichus_contig107787:1419..1706+ (Fucus distichus monoicous)
AACACCATGAGCATCTCCAAAGAGCTTCACGATGAACTTTGCACTTCCTA
CGCCTCTATGGCGCTCTACGATGGCGATGTGAGCTATGCCGAGACAGTAG
TTCAGCTTTCCTTCCAGTGGTAGCACATTCTTCACGTTGTCAGGAGCGAA
GCGCTACTGTCTGTACTGAAATACGTTCGCTCTGGCTGGCAAGCTCAGAA
AAAGCCTGGGCTGGCTCAATTCATAGCACACGCTTGACAGTTTGTCATGG
TGTAATCTTTTTCTGGTCTAGGCAAAGAATAGTGTGGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig107787:1419..1706+

>mRNA_F-distichus_contig107787.664.1 ID=mRNA_F-distichus_contig107787.664.1|Name=mRNA_F-distichus_contig107787.664.1|organism=Fucus distichus monoicous|type=CDS|length=234bp|location=Sequence derived from alignment at F-distichus_contig107787:1419..1706+ (Fucus distichus monoicous)
ATGAGCATCTCCAAAGAGCTTCACGATGAACTTTGCACTTCCTACGCCTC
TATGGCGCTCTACGATGGCGATGTGAGCTATGCCGAGACAGTAGTTCAGC
TTTCCTTCCAGTGGTAGATGAGCATCTCCAAAGAGCTTCACGATGAACTT
TGCACTTCCTACGCCTCTATGGCGCTCTACGATGGCGATGTGAGCTATGC
CGAGACAGTAGTTCAGCTTTCCTTCCAGTGGTAG
back to top