mRNA_F-distichus_contig106956.590.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106956.590.1
Unique NamemRNA_F-distichus_contig106956.590.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: A0A6H5L626_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L626_9PHAE)

HSP 1 Score: 293 bits (751), Expect = 1.670e-96
Identity = 143/166 (86.14%), Postives = 153/166 (92.17%), Query Frame = 1
Query:    1 QERPTKVIACVGLGLCLARHHLFP---AAGARKRAKLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            QERPTKVIACVGLGLCLARHHL P    A  R+R K+TARF+GALP+WG+S+LKSNAVGKFVTVVGNVVRVSGISAMV+KA FACP+CGCEQ RQFVDGK NPPTSC GANCKARSFELLR+TATTVDFQKIKLQEI+DD SEAGRIPRTVEVELHEDLVDTCIPG
Sbjct:    9 QERPTKVIACVGLGLCLARHHLCPEGSVAAVRRRGKVTARFDGALPVWGISELKSNAVGKFVTVVGNVVRVSGISAMVLKASFACPKCGCEQTRQFVDGKFNPPTSCAGANCKARSFELLRNTATTVDFQKIKLQEIEDDTSEAGRIPRTVEVELHEDLVDTCIPG 174          
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: D7FZW5_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZW5_ECTSI)

HSP 1 Score: 292 bits (747), Expect = 3.660e-91
Identity = 142/166 (85.54%), Postives = 152/166 (91.57%), Query Frame = 1
Query:    1 QERPTKVIACVGLGLCLARHHLFP---AAGARKRAKLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            QERPTKVIACVGLGLCLARHHL P    A  R+R K+TARF+GALP+WG+S+LKSNAVGKFVTVVGNVVRVSGISAMV+KA FACP+CGCEQ RQFVDGK NPPTSC G NCKARSFELLR+TATTVDFQKIKLQEI+DD SEAGRIPRTVEVELHEDLVDTCIPG
Sbjct:  123 QERPTKVIACVGLGLCLARHHLCPEGSVAAVRRRGKVTARFDGALPVWGISELKSNAVGKFVTVVGNVVRVSGISAMVLKASFACPKCGCEQTRQFVDGKFNPPTSCAGTNCKARSFELLRNTATTVDFQKIKLQEIEDDTSEAGRIPRTVEVELHEDLVDTCIPG 288          
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: A0A836CFT0_9STRA (MCM2/3/5 family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CFT0_9STRA)

HSP 1 Score: 168 bits (426), Expect = 1.880e-45
Identity = 88/165 (53.33%), Postives = 111/165 (67.27%), Query Frame = 1
Query:   10 PTKVIACVGLGLCLAR---HHLFPAAGARKR--AKLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            P K + C+GL LCLAR   H L   A A  R  A+L+A    A  +     L+S  VGKFVTV GNVVR S ++ +V +A F C RCG  Q R+F +GK  PP  C GANCKAR+FELLR TA TVD+Q+++LQEI+ D++E GR+PRT+E E+ EDLVD CIP 
Sbjct:   90 PDKTLGCLGLALCLARAAAHPLLDTAAAAPRIAARLSAPPSAATDI---GRLRSLLVGKFVTVTGNVVRASSVAPLVTRAEFECARCGAVQARRFAEGKFAPPVRCVGANCKARTFELLRETAVTVDYQRLRLQEIEGDSTEPGRVPRTLEEEVQEDLVDLCIPS 251          
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: A0A5D6Y160_9STRA (MCM domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y160_9STRA)

HSP 1 Score: 151 bits (382), Expect = 1.410e-39
Identity = 77/172 (44.77%), Postives = 109/172 (63.37%), Query Frame = 1
Query:    1 QERPTKVIACVGLGLCLARHHLFPA---AGARKRA------KLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            QE    VI C+G+ LC+ RH    A     AR+R+      K+  R  G  P+  ++ LK++ V +FV+VVG  VRVS I  +V +  F C +C     R F DGK+NPPT+C  A C++R+    RST  TVD+QKIK+QE++++++  GRIPR +EVEL++DLVD CIPG
Sbjct:  122 QENVEDVIPCLGIALCMLRHEQRQAQEETPARQRSVPLDRTKIAVRLHGVAPVLPLAALKADVVDQFVSVVGTCVRVSAIKPLVTRCDFVCAKCNGVTSRAFPDGKYNPPTACENAPCRSRTLLPNRSTVETVDYQKIKMQEMENNDAGPGRIPRMIEVELYDDLVDACIPG 293          
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: W7U0Y4_9STRA (Dna replication licensing factor mcm8 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0Y4_9STRA)

HSP 1 Score: 150 bits (379), Expect = 4.480e-39
Identity = 82/162 (50.62%), Postives = 100/162 (61.73%), Query Frame = 1
Query:    4 ERPTKVIACVGLGLCLARHHLFPAAGARKRAKLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            E+P + ++ +GL   LA   L P      +  L ARFE   P+  M  LKS  VG+FVTV G V R S I  +V+ A F C +CG     +F DG    P SCP   C+ ++FEL R TA TVD+QKIKLQEIDD+  E GRIPRTVEVEL  DLVDTC+PG
Sbjct:   97 EQPVQTLSLIGLAASLALG-LDPRQTGDSQG-LQARFEHVEPVAPMGSLKSGLVGRFVTVKGTVARASAIRPLVLGADFECFKCGVHMPMKFTDGIFQWPESCPTLRCRNKNFELRRETAVTVDYQKIKLQEIDDEGGEPGRIPRTVEVELRGDLVDTCVPG 256          
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: K3X799_GLOUD (MCM domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X799_GLOUD)

HSP 1 Score: 150 bits (378), Expect = 5.720e-39
Identity = 77/172 (44.77%), Postives = 108/172 (62.79%), Query Frame = 1
Query:    1 QERPTKVIACVGLGLCLARHHL------FPAAGAR---KRAKLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            QE    VI C+G+ LC+ RH L       PA        R K++ R  G  P+  ++ LK++ V +FV+V+G VVRVS I  +V +  F C +C     R F DGK+NPP +C  + C++R+    RST  TVDFQKIK+QE+++ ++  GRIPR +EVEL+EDLVD+CIPG
Sbjct:  122 QENVEDVIPCLGIALCMLRHELRQEQEDTPARQCNVPLDRTKISVRLHGITPVLPIAALKADVVNQFVSVMGTVVRVSAIKPLVTRCDFVCVKCNEVTSRAFPDGKYNPPMACEISPCRSRTLVPNRSTVETVDFQKIKIQEMENSDAGPGRIPRMIEVELYEDLVDSCIPG 293          
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: W2P438_PHYPR (MCM_OB domain-containing protein n=2 Tax=Phytophthora parasitica TaxID=4792 RepID=W2P438_PHYPR)

HSP 1 Score: 141 bits (356), Expect = 5.270e-38
Identity = 75/171 (43.86%), Postives = 103/171 (60.23%), Query Frame = 1
Query:    4 ERPTKVIACVGLGLCLARHHLFPAAG---ARKRA------KLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            E    V+ C+G+ LC+ RH L   A     RKR+      K+T R  G  P+  ++ LK++ V +FV+VVG VVRVS I  +V +  F C +C     R F DGK  PP  C  + C+ R+    RS+  TVD+QKIKLQE++  +   GR+PR +EVEL+EDLVD+CIPG
Sbjct:  117 ENIEDVLLCLGIALCMRRHELRVEAEEDITRKRSMPVDRTKITVRLHGVTPVLPIAALKADVVNQFVSVVGTVVRVSAIKPLVTRCDFVCAKCNEATSRAFPDGKFIPPQRCENSPCRGRTLLPNRSSVDTVDYQKIKLQEMETTDVGPGRMPRMIEVELYEDLVDSCIPG 287          
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: A0A8K1FPC6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FPC6_PYTOL)

HSP 1 Score: 143 bits (360), Expect = 1.590e-36
Identity = 73/171 (42.69%), Postives = 106/171 (61.99%), Query Frame = 1
Query:    4 ERPTKVIACVGLGLCLARHHLF---PAAGARKR------AKLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            E    VI C+G+ LC+ RH        + AR+R       K+  R  G  P+  ++ LK++AV +FV+V+G VVRVS I  +V +  F C +CG    R F DG + PP+ C  + C++++    RST  TVD+QKIK+QE++  ++  GRIPR +EVEL+EDLVD+CIPG
Sbjct:  124 ENVEDVICCLGIALCMVRHERRVEQEESPARQRHLRVDHTKINVRLHGVSPVLPIAALKADAVSQFVSVMGTVVRVSAIKPLVRRCDFVCAKCGEATSRAFPDGNYTPPSKCEHSPCRSKNLVPNRSTVETVDYQKIKVQEMESSDAGPGRIPRMIEVELYEDLVDSCIPG 294          
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: A0A6A3LSF4_9STRA (DNA helicase n=3 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3LSF4_9STRA)

HSP 1 Score: 142 bits (358), Expect = 3.300e-36
Identity = 76/171 (44.44%), Postives = 103/171 (60.23%), Query Frame = 1
Query:    4 ERPTKVIACVGLGLCLARHHLFPAAG---ARKRA------KLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            E    V+ C+G+ LC+ RH L   A     RKR+      K+T R  G  P+  ++ LK++ V +FV+VVG VVRVS I  +V +  F C +C     R F DGK  PP  C  A C+ R+    RS+  TVD+QKIKLQE++  +   GR+PR +EVEL+EDLVD+CIPG
Sbjct:  469 ENIEDVLLCLGIALCMRRHELRVDAEEDVTRKRSVPVDRTKITVRLHGVTPVLPIAALKADVVNQFVSVVGTVVRVSAIKPLVTRCDFVCAKCNEATSRAFPDGKFVPPQRCENAPCRGRTLLPNRSSVDTVDYQKIKLQEMETTDVGPGRMPRMIEVELYEDLVDSCIPG 639          
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Match: A0A024G6T3_9STRA (MCM domain-containing protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G6T3_9STRA)

HSP 1 Score: 142 bits (357), Expect = 3.560e-36
Identity = 76/163 (46.63%), Postives = 104/163 (63.80%), Query Frame = 1
Query:    1 QERPTKVIACVGLGLCLARHHLFPAAGARKRAKLTARFEGALPLWGMSDLKSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNPPTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEVELHEDLVDTCIPG 489
            QE P +VIAC+GL LCL R  +   +     +++  RF    P+  +S +KS+ +  FV+V G +VRVS I  +V +  F C +CG    R F DGK+NPP  C  A C+++     RST TT+DFQ IK+QEID +   +GR+PR +EVELHEDLVD+CIPG
Sbjct:   99 QEHPEQVIACLGLALCLFRDKVQATS-----SRILVRFYDVAPVLSISQIKSHVINHFVSVRGTIVRVSPIKPLVTQCNFICGKCGRITLRVFPDGKYNPPIKCMYA-CRSKLLPD-RSTVTTIDFQTIKIQEIDHEEH-SGRVPRMIEVELHEDLVDSCIPG 253          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106956.590.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L626_9PHAE1.670e-9686.14MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FZW5_ECTSI3.660e-9185.54MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A836CFT0_9STRA1.880e-4553.33MCM2/3/5 family-domain-containing protein n=1 Tax=... [more]
A0A5D6Y160_9STRA1.410e-3944.77MCM domain-containing protein n=1 Tax=Pythium bras... [more]
W7U0Y4_9STRA4.480e-3950.62Dna replication licensing factor mcm8 n=2 Tax=Mono... [more]
K3X799_GLOUD5.720e-3944.77MCM domain-containing protein n=1 Tax=Globisporang... [more]
W2P438_PHYPR5.270e-3843.86MCM_OB domain-containing protein n=2 Tax=Phytophth... [more]
A0A8K1FPC6_PYTOL1.590e-3642.69Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6A3LSF4_9STRA3.300e-3644.44DNA helicase n=3 Tax=Phytophthora fragariae TaxID=... [more]
A0A024G6T3_9STRA3.560e-3646.63MCM domain-containing protein n=1 Tax=Albugo candi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106956contigF-distichus_contig106956:122..1743 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score290.8
Seed ortholog evalue3.9e-76
Seed eggNOG ortholog2880.D7FZW5
Preferred nameMCM8
KEGG koko:K10737
Hectar predicted targeting categorysignal peptide
GOsGO:0000003,GO:0000082,GO:0000278,GO:0000280,GO:0000724,GO:0000725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006259,GO:0006260,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007140,GO:0007143,GO:0007275,GO:0007276,GO:0007292,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009555,GO:0009987,GO:0016043,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044843,GO:0046483,GO:0048229,GO:0048232,GO:0048285,GO:0048609,GO:0048856,GO:0050896,GO:0051321,GO:0051704,GO:0051716,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0097362,GO:0140013,GO:1901360,GO:1901576,GO:1903046,GO:1903047
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1241@1,KOG0480@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons3
Model size489
Cds size489
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106956.590.1prot_F-distichus_contig106956.590.1Fucus distichus monoicouspolypeptideF-distichus_contig106956 122..1743 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928996.712435-CDS-F-distichus_contig106956:121..2741622928996.712435-CDS-F-distichus_contig106956:121..274Fucus distichus monoicousCDSF-distichus_contig106956 122..274 -
1690885098.5215685-CDS-F-distichus_contig106956:121..2741690885098.5215685-CDS-F-distichus_contig106956:121..274Fucus distichus monoicousCDSF-distichus_contig106956 122..274 -
1622928996.729644-CDS-F-distichus_contig106956:1131..13011622928996.729644-CDS-F-distichus_contig106956:1131..1301Fucus distichus monoicousCDSF-distichus_contig106956 1132..1301 -
1690885098.5343065-CDS-F-distichus_contig106956:1131..13011690885098.5343065-CDS-F-distichus_contig106956:1131..1301Fucus distichus monoicousCDSF-distichus_contig106956 1132..1301 -
1622928996.7473984-CDS-F-distichus_contig106956:1577..17431622928996.7473984-CDS-F-distichus_contig106956:1577..1743Fucus distichus monoicousCDSF-distichus_contig106956 1578..1743 -
1690885098.5439894-CDS-F-distichus_contig106956:1577..17431690885098.5439894-CDS-F-distichus_contig106956:1577..1743Fucus distichus monoicousCDSF-distichus_contig106956 1578..1743 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106956.590.1

>prot_F-distichus_contig106956.590.1 ID=prot_F-distichus_contig106956.590.1|Name=mRNA_F-distichus_contig106956.590.1|organism=Fucus distichus monoicous|type=polypeptide|length=163bp
QERPTKVIACVGLGLCLARHHLFPAAGARKRAKLTARFEGALPLWGMSDL
KSNAVGKFVTVVGNVVRVSGISAMVVKAGFACPRCGCEQERQFVDGKHNP
PTSCPGANCKARSFELLRSTATTVDFQKIKLQEIDDDNSEAGRIPRTVEV
ELHEDLVDTCIPG
back to top

mRNA from alignment at F-distichus_contig106956:122..1743-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106956.590.1 ID=mRNA_F-distichus_contig106956.590.1|Name=mRNA_F-distichus_contig106956.590.1|organism=Fucus distichus monoicous|type=mRNA|length=1622bp|location=Sequence derived from alignment at F-distichus_contig106956:122..1743- (Fucus distichus monoicous)
CAGGAACGGCCGACGAAGGTCATCGCGTGCGTGGGCTTGGGGCTATGCCT CGCGAGGCACCACCTCTTCCCGGCGGCAGGAGCTCGGAAACGAGCGAAAC TGACGGCGCGATTCGAAGGTGCTCTGCCCTTGTGGGGCATGTCGGACCTC AAGTCTAACGCCGTAGGTGAGCGCGATTGCCGTACCCAACTGTTGCAAAT AATTTGCTTTGTTTTTTTTGCCACCCCCCATCCCCCCTTCTCCTTACCAG CAACATTATACCATTATTCTATTATATTGATACTGATACTGCTGTTTTGG TTGTATTTATCGTGGTTTGTCCTTATTTTCCTGTTTAAATTTAAATTTAA AAGGTACCAGGTACGCACTTTTCTTTTCTTTTCTTTTTTCAGGGGGCTGA GGCTGCTTTTTTTTTCCGGCCTCTCCCTCATTCCACCGCCAGGAAAGTTT GTGACCGTCGTCGGTAACGTCGTTCGAGTGTCCGGTATATCAGCCATGGT TGTGAAGGCGGGCTTCGCCTGTCCCAGGTGCGGGTGCGAGCAGGAGCGGC AGTTCGTGGACGGCAAGCACAATCCGCCCACTTCTTGCCCCGGCGCCAAC TGCAAGGCCAGGGTAAGGATCGCGGCTTTGATATATATTATCGTATAGCT CTATATGGTTATGATCGTACATTGTGTGTTACGTGTTTCTATAGTTTAAG GATCGCGGCCTTGAAATATATTATGGCATAGCGCTGTTTCTATAGTGTTA AAACACATCCCGGGGAATAATTGAGTGTAGATGAGCATCCCCGTTCCGTT AGCTTTTTTTCCCCCCGCGACCATGCGCACAGATCTCTCGATAAGCTTTC AAAAAAATCCCTCTTTACAGTACTGTAAATTGAAAATTCTTAGTTCCAAA TTGCTGTATATCGCCAGACTACACCTTCCCGTTATGTAGATCAAATAGAT GCAAGTGTATAGTTTATGGAAATAGTATCCTGGTGTGTAGTGTATCACGT GCTTCGTATTAAATAGTAGATACTTGCAGCACAGGTCGGTACCGTGGTCT CACGAAACACTTCGATTTACTGTCGCCAACATGCTGAAATTGATTAAAAA AAAGTTTTGGAAAGATATCGAGGCCCTGACGAAGACGAACCTTGACGTAC CCTAATAATCCATCTCTCTCTCTCTCTATATATATATATATACACATATA TATATATATACCCCTTGTCAAATACTATTGCGGAACTAAAATTTGGCAGG CGGCAGCCATCAACTACAAGCGGTCACCTTGGCGTCCGCCCTATCAACAA CGCACGGTACTGGGGTATTATTAATAGTGAAAATTCCATCAAAGCTTCTA ACCCGCCCACTCCAACGACCGCCGTACATCCCATCATGCTCATCGAAGTC CCGTTACACCCTGCGTTATCATATATTGTCGCCTTGCCTCTCCTGCCCTC GCCTCTTCCCCGCAACAAGAGCTTCGAGCTACTTCGAAGCACCGCGACCA CGGTAGATTTTCAGAAGATCAAGCTGCAGGAGATCGATGACGATAACTCA GAGGCGGGTCGAATCCCCCGTACGGTGGAGGTTGAGCTTCACGAGGACTT GGTGGATACCTGCATACCGGGT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig106956:122..1743-

>mRNA_F-distichus_contig106956.590.1 ID=mRNA_F-distichus_contig106956.590.1|Name=mRNA_F-distichus_contig106956.590.1|organism=Fucus distichus monoicous|type=CDS|length=978bp|location=Sequence derived from alignment at F-distichus_contig106956:122..1743- (Fucus distichus monoicous)
CAGGAACGGCCGACGAAGGTCATCGCGTGCGTGGGCTTGGGGCTATGCCT
CGCGAGGCACCACCTCTTCCCGGCGGCAGGAGCTCGGAAACGAGCGAAAC
TGACGGCGCGATTCGAAGGTGCTCTGCCCTTGTGGGGCATGTCGGACCTC
AAGTCTAACGCCGTAGCAGGAACGGCCGACGAAGGTCATCGCGTGCGTGG
GCTTGGGGCTATGCCTCGCGAGGCACCACCTCTTCCCGGCGGCAGGAGCT
CGGAAACGAGCGAAACTGACGGCGCGATTCGAAGGTGCTCTGCCCTTGTG
GGGCATGTCGGACCTCAAGTCTAACGCCGTAGGAAAGTTTGTGACCGTCG
TCGGTAACGTCGTTCGAGTGTCCGGTATATCAGCCATGGTTGTGAAGGCG
GGCTTCGCCTGTCCCAGGTGCGGGTGCGAGCAGGAGCGGCAGTTCGTGGA
CGGCAAGCACAATCCGCCCACTTCTTGCCCCGGCGCCAACTGCAAGGCCA
GGGAAAGTTTGTGACCGTCGTCGGTAACGTCGTTCGAGTGTCCGGTATAT
CAGCCATGGTTGTGAAGGCGGGCTTCGCCTGTCCCAGGTGCGGGTGCGAG
CAGGAGCGGCAGTTCGTGGACGGCAAGCACAATCCGCCCACTTCTTGCCC
CGGCGCCAACTGCAAGGCCAGGAGCTTCGAGCTACTTCGAAGCACCGCGA
CCACGGTAGATTTTCAGAAGATCAAGCTGCAGGAGATCGATGACGATAAC
TCAGAGGCGGGTCGAATCCCCCGTACGGTGGAGGTTGAGCTTCACGAGGA
CTTGGTGGATACCTGCATACCGGGTAGCTTCGAGCTACTTCGAAGCACCG
CGACCACGGTAGATTTTCAGAAGATCAAGCTGCAGGAGATCGATGACGAT
AACTCAGAGGCGGGTCGAATCCCCCGTACGGTGGAGGTTGAGCTTCACGA
GGACTTGGTGGATACCTGCATACCGGGT
back to top