mRNA_F-distichus_contig106765.577.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106765.577.1
Unique NamemRNA_F-distichus_contig106765.577.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: D8LEU3_ECTSI (Trafficking protein particle complex subunit 2-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEU3_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.710e-26
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 1
Query:    1 ELAKKRPSGVADASTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDLKKV 177
            ++ +K  SG AD STDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRE +LK+V
Sbjct:   50 KVGRKGASGAADVSTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIREPELKRV 108          
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: K8YQL7_NANGC (Trafficking protein particle complex subunit 2-like protein (Fragment) n=2 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YQL7_NANGC)

HSP 1 Score: 70.9 bits (172), Expect = 2.200e-14
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   19 PSGVADAST-DMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDLKKV 177
            PS  + AST DMFLG+LCPI+E+RVYGY TST++K LA+L + N +RE+DLK V
Sbjct:   63 PSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSV 116          
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: W7T3S0_9STRA (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T3S0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.090e-13
Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   19 PSGVADAST-DMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDLKKV 177
            PS  + AST DMFLG+LCPI+E+RVYGY TST++K LA+L + N +RE+DLK V
Sbjct:   58 PSFPSPASTNDMFLGYLCPIEEFRVYGYKTSTQIKFLAILTENNPVRENDLKSV 111          
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: A0A836CHF0_9STRA (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF0_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.310e-12
Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 1
Query:   37 ASTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDL 168
            A+ DMFLGHLCP+DEY VYGY+TST++K+LAVLE+    R+S+L
Sbjct:   66 ATRDMFLGHLCPMDEYEVYGYVTSTQVKILAVLEETVTSRKSEL 109          
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: A0A0G4ISZ6_PLABS (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4ISZ6_PLABS)

HSP 1 Score: 60.5 bits (145), Expect = 5.950e-10
Identity = 27/49 (55.10%), Postives = 39/49 (79.59%), Query Frame = 1
Query:   25 GVADASTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDLK 171
            GV+ A  D +LG+LCPIDEY+VYGYMT + +K + V++DV  +R+SD+K
Sbjct:   56 GVSPAPFDKYLGYLCPIDEYKVYGYMTVSDIKFIVVVQDVF-VRDSDMK 103          
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: K3WRF7_GLOUD (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRF7_GLOUD)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-9
Identity = 26/54 (48.15%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   10 KKRPSGVADASTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDLK 171
            K R +G+  A  DM+LG L PI++YRVYGY+T+T +K +A+++D + +RES+L+
Sbjct:   42 KLRSAGIMAAKDDMYLGFLGPIEDYRVYGYVTNTSIKFVAIMQD-SPVRESELR 94          
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: A0A662X0I1_9STRA (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0I1_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 1.530e-9
Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 1
Query:   10 KKRPSGVADASTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDLKKV 177
            K R +G+  +  DM+LG L PI++YRVYGY+T+T +K +AVL D   +RES+L+ V
Sbjct:   72 KLRSAGITSSKEDMYLGFLGPIEDYRVYGYVTNTSVKFVAVLHDT-PVRESELRPV 126          
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: A0A7S3JXJ4_9STRA (Trafficking protein particle complex subunit 2-like protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JXJ4_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 1.690e-9
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   46 DMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDLKK 174
            D +LG LCPIDEY+V+GYMTST +K + +L D N ++ESDL++
Sbjct:   81 DRYLGFLCPIDEYQVFGYMTSTHIKFMVILFDENLVQESDLRE 123          
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: TPC2L_DICDI (Trafficking protein particle complex subunit 2-like protein n=2 Tax=Dictyosteliaceae TaxID=2058185 RepID=TPC2L_DICDI)

HSP 1 Score: 57.8 bits (138), Expect = 4.700e-9
Identity = 23/57 (40.35%), Postives = 41/57 (71.93%), Query Frame = 1
Query:    1 ELAKKRPSGVADASTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDLK 171
            ++ + +P       +DM+LG L P ++Y+VYGY+T+T++K + V+ D +DI++SDLK
Sbjct:   43 DIIEDKPGSNKKLPSDMYLGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSDLK 99          
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Match: D0N1W2_PHYIT (Trafficking protein particle complex subunit 2-like protein n=6 Tax=Peronosporaceae TaxID=4777 RepID=D0N1W2_PHYIT)

HSP 1 Score: 57.8 bits (138), Expect = 4.700e-9
Identity = 26/54 (48.15%), Postives = 40/54 (74.07%), Query Frame = 1
Query:   10 KKRPSGVADASTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVNDIRESDLK 171
            K R +G+  +  DM+LG L PI++YRVYGY+T+T +K + VL+D   +RES+L+
Sbjct:   43 KLRGAGITSSKDDMYLGFLGPIEDYRVYGYVTNTSVKFVVVLQDA-PVRESELR 95          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106765.577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LEU3_ECTSI3.710e-2681.36Trafficking protein particle complex subunit 2-lik... [more]
K8YQL7_NANGC2.200e-1462.96Trafficking protein particle complex subunit 2-lik... [more]
W7T3S0_9STRA1.090e-1362.96Trafficking protein particle complex subunit 2-lik... [more]
A0A836CHF0_9STRA3.310e-1265.91Trafficking protein particle complex subunit 2-lik... [more]
A0A0G4ISZ6_PLABS5.950e-1055.10Trafficking protein particle complex subunit 2-lik... [more]
K3WRF7_GLOUD1.190e-948.15Trafficking protein particle complex subunit 2-lik... [more]
A0A662X0I1_9STRA1.530e-950.00Trafficking protein particle complex subunit 2-lik... [more]
A0A7S3JXJ4_9STRA1.690e-958.14Trafficking protein particle complex subunit 2-lik... [more]
TPC2L_DICDI4.700e-940.35Trafficking protein particle complex subunit 2-lik... [more]
D0N1W2_PHYIT4.700e-948.15Trafficking protein particle complex subunit 2-lik... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106765contigF-distichus_contig106765:1680..1856 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.1
Seed ortholog evalue9.4e-20
Seed eggNOG ortholog2880.D8LEU3
Preferred nameTRAPPC2L
KEGG koko:K13354,ko:K17622,ko:K20301
KEGG TC2.A.29.20.1
KEGG Pathwayko04146,map04146
Hectar predicted targeting categoryother localisation
GOsGO:0003008,GO:0003674,GO:0005085,GO:0005088,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007600,GO:0008150,GO:0009987,GO:0012505,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017112,GO:0017137,GO:0019233,GO:0019899,GO:0022607,GO:0030008,GO:0031267,GO:0032501,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043933,GO:0044085,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0050877,GO:0051020,GO:0051179,GO:0051234,GO:0051259,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0061024,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0090114,GO:0098772,GO:0099023
EggNOG free text desc.ER to Golgi vesicle-mediated transport
EggNOG OGsKOG3444@1,KOG3444@2759
Ec32 ortholog descriptionSedlin
Ec32 orthologEc-21_005600.1
EC3.1.3.48
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko02000,ko04131
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.3897836-CDS-F-distichus_contig106765:1679..18561622928995.3897836-CDS-F-distichus_contig106765:1679..1856Fucus distichus monoicousCDSF-distichus_contig106765 1680..1856 +
1690885097.8078806-CDS-F-distichus_contig106765:1679..18561690885097.8078806-CDS-F-distichus_contig106765:1679..1856Fucus distichus monoicousCDSF-distichus_contig106765 1680..1856 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106765.577.1prot_F-distichus_contig106765.577.1Fucus distichus monoicouspolypeptideF-distichus_contig106765 1680..1856 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106765.577.1

>prot_F-distichus_contig106765.577.1 ID=prot_F-distichus_contig106765.577.1|Name=mRNA_F-distichus_contig106765.577.1|organism=Fucus distichus monoicous|type=polypeptide|length=59bp
ELAKKRPSGVADASTDMFLGHLCPIDEYRVYGYMTSTRLKLLAVLEDVND
IRESDLKKV
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mRNA from alignment at F-distichus_contig106765:1680..1856+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106765.577.1 ID=mRNA_F-distichus_contig106765.577.1|Name=mRNA_F-distichus_contig106765.577.1|organism=Fucus distichus monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at F-distichus_contig106765:1680..1856+ (Fucus distichus monoicous)
GAGCTAGCGAAGAAAAGGCCATCCGGAGTGGCGGACGCTTCGACAGACAT GTTCCTGGGGCATCTTTGCCCCATCGATGAATACCGCGTATACGGCTACA TGACCAGCACGCGACTCAAACTCTTAGCGGTGCTAGAAGACGTCAACGAT ATCCGGGAGTCGGACCTGAAGAAGGTG
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Coding sequence (CDS) from alignment at F-distichus_contig106765:1680..1856+

>mRNA_F-distichus_contig106765.577.1 ID=mRNA_F-distichus_contig106765.577.1|Name=mRNA_F-distichus_contig106765.577.1|organism=Fucus distichus monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at F-distichus_contig106765:1680..1856+ (Fucus distichus monoicous)
GAGCTAGCGAAGAAAAGGCCATCCGGAGTGGCGGACGCTTCGACAGACAT
GTTCCTGGGGCATCTTTGCCCCATCGATGAATACCGCGTATACGGCTACA
TGACCAGCACGCGACTCAAACTCTTAGCGGTGCTAGAAGACGTCAACGAT
ATCCGGGAGTCGGACCTGAAGAAGGTGGAGCTAGCGAAGAAAAGGCCATC
CGGAGTGGCGGACGCTTCGACAGACATGTTCCTGGGGCATCTTTGCCCCA
TCGATGAATACCGCGTATACGGCTACATGACCAGCACGCGACTCAAACTC
TTAGCGGTGCTAGAAGACGTCAACGATATCCGGGAGTCGGACCTGAAGAA
GGTG
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