mRNA_F-distichus_contig106750.576.1 (mRNA) Fucus distichus monoicous
|
Overview
Homology
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0) HSP 1 Score: 68.6 bits (166), Expect = 6.350e-13 Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 1
Query: 10 MEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
M D+RLPK +M+GE++ G VGGQ+K + C L+ GI D W AQD WR +GA+ AKRIA K K +R
Sbjct: 1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAKAAEAKRIAEAKQKHNVR 83
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE) HSP 1 Score: 65.1 bits (157), Expect = 1.000e-10 Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query: 1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRRTAEQGAEHFTAK 222
+ RMED RLPK ++ GEM GGAG GGQE W+ +DL AFG+ ++ W +A+D+ W E GA F K
Sbjct: 141 IMRMEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRK 218
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: UPI00035A230D (uncharacterized protein LOC101847595 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A230D) HSP 1 Score: 64.7 bits (156), Expect = 3.100e-10 Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 1
Query: 1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
V RM D+RLPK +M+GE++ G V GQ+K + C L+ GI D T AQD WR +GA+ AKRIA K K +R
Sbjct: 527 VIRMADSRLPKQLMYGELLHGKRSVRGQKKRFKDCLKVSLKELGILNDLCETLAQDRPTWRCKLTKGAKAAEAKRIAEAKQKRNVR 612
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A7M3PRY6_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PRY6_SPIER) HSP 1 Score: 63.5 bits (153), Expect = 7.810e-10 Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
+ RM+D RLPK +++G++ G+ C GGQ + + L+ IN +W A D WRRT + A A RIAA KVK R
Sbjct: 156 LVRMDDERLPKRLIYGDVATGSRCQGGQIRRYKNTLKSSLKRLQINPTKWEELALDRPTWRRTVKTSAAIHEANRIAAAKVKREAR 241
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A7M3PXV5_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PXV5_SPIER) HSP 1 Score: 62.4 bits (150), Expect = 2.040e-9 Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
+ RM+D RLPK +++G++ G+ GGQ + + L+ IN W A D WRRT + GA + A RIAA KVK R
Sbjct: 425 LVRMDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKCLQINPTNWEELALDRPTWRRTLKTGAAIYEANRIAAAKVKCEAR 510
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A654HMC6_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HMC6_9CEST) HSP 1 Score: 61.2 bits (147), Expect = 4.790e-9 Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 1
Query: 1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
+ RM+D RLPK +++G+++ G+ GGQ + + L+ +N W A D WRRT + GA + A IAA KVK R
Sbjct: 9 LVRMDDERLPKRLLYGDVVTGSRRQGGQIRRYKDTLKSSLKRLQLNPTNWEELALDRPTWRRTVKTGAAIYEANHIAAAKVKREAR 94
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 6.980e-9 Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 1
Query: 1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRRTAEQGAEHFTAK 222
V RMED+RLPK ++ GEM G G GGQE W+ +DL AF + ++ W +A+D W E GA F K
Sbjct: 118 VMRMEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRK 195
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A654HW91_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HW91_9CEST) HSP 1 Score: 60.5 bits (145), Expect = 9.860e-9 Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 1
Query: 1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
+ RM+D RLPK +++G++ G+ G Q + + L+ IN W A D WRRT + GA + A RIAA KVK R
Sbjct: 756 LVRMDDERLPKRLIYGDVATGSRRQGSQIRRYKDTLKSSLKRLQINPTNWEEIAHDRPTWRRTVKTGAAIYEANRIAAAKVKREAR 841
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A6P4ZXC7_BRABE (protocadherin Fat 4-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZXC7_BRABE) HSP 1 Score: 60.1 bits (144), Expect = 1.370e-8 Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1
Query: 1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIA 231
+ RM DTRLPK +++ E++ G VGGQ+K + L++F I+ W +AAQ+ WR GA + RIA
Sbjct: 302 LVRMPDTRLPKRLLYSELVEGKRSVGGQKKRFKDTLKTTLKSFKIDTSTWESAAQNRAAWRSHISSGATLYEKTRIA 378
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE) HSP 1 Score: 58.5 bits (140), Expect = 1.630e-8 Identity = 30/72 (41.67%), Postives = 39/72 (54.17%), Query Frame = 1
Query: 1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINAD----QWTTAAQDEGKWRRTAEQGA 204
V RMED RLPK ++ GEM GG GGQE W+ +DL AF + + +W +A+D W E GA
Sbjct: 123 VMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDGA 194 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig106750.576.1 >prot_F-distichus_contig106750.576.1 ID=prot_F-distichus_contig106750.576.1|Name=mRNA_F-distichus_contig106750.576.1|organism=Fucus distichus monoicous|type=polypeptide|length=83bp MEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAback to top mRNA from alignment at F-distichus_contig106750:962..1219- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig106750.576.1 ID=mRNA_F-distichus_contig106750.576.1|Name=mRNA_F-distichus_contig106750.576.1|organism=Fucus distichus monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at F-distichus_contig106750:962..1219- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig106750:962..1219- >mRNA_F-distichus_contig106750.576.1 ID=mRNA_F-distichus_contig106750.576.1|Name=mRNA_F-distichus_contig106750.576.1|organism=Fucus distichus monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at F-distichus_contig106750:962..1219- (Fucus distichus monoicous)back to top |