mRNA_F-distichus_contig106750.576.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106750.576.1
Unique NamemRNA_F-distichus_contig106750.576.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0)

HSP 1 Score: 68.6 bits (166), Expect = 6.350e-13
Identity = 36/83 (43.37%), Postives = 47/83 (56.63%), Query Frame = 1
Query:   10 MEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
            M D+RLPK +M+GE++ G   VGGQ+K +  C    L+  GI  D W   AQD   WR    +GA+   AKRIA  K K  +R
Sbjct:    1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAKAAEAKRIAEAKQKHNVR 83          
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE)

HSP 1 Score: 65.1 bits (157), Expect = 1.000e-10
Identity = 34/78 (43.59%), Postives = 45/78 (57.69%), Query Frame = 1
Query:    1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRRTAEQGAEHFTAK 222
            + RMED RLPK ++ GEM GGAG  GGQE  W+    +DL AFG+  ++    W  +A+D+  W    E GA  F  K
Sbjct:  141 IMRMEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRK 218          
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: UPI00035A230D (uncharacterized protein LOC101847595 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A230D)

HSP 1 Score: 64.7 bits (156), Expect = 3.100e-10
Identity = 37/86 (43.02%), Postives = 48/86 (55.81%), Query Frame = 1
Query:    1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
            V RM D+RLPK +M+GE++ G   V GQ+K +  C    L+  GI  D   T AQD   WR    +GA+   AKRIA  K K  +R
Sbjct:  527 VIRMADSRLPKQLMYGELLHGKRSVRGQKKRFKDCLKVSLKELGILNDLCETLAQDRPTWRCKLTKGAKAAEAKRIAEAKQKRNVR 612          
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A7M3PRY6_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PRY6_SPIER)

HSP 1 Score: 63.5 bits (153), Expect = 7.810e-10
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
            + RM+D RLPK +++G++  G+ C GGQ + +       L+   IN  +W   A D   WRRT +  A    A RIAA KVK   R
Sbjct:  156 LVRMDDERLPKRLIYGDVATGSRCQGGQIRRYKNTLKSSLKRLQINPTKWEELALDRPTWRRTVKTSAAIHEANRIAAAKVKREAR 241          
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A7M3PXV5_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PXV5_SPIER)

HSP 1 Score: 62.4 bits (150), Expect = 2.040e-9
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
            + RM+D RLPK +++G++  G+   GGQ + +       L+   IN   W   A D   WRRT + GA  + A RIAA KVK   R
Sbjct:  425 LVRMDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKCLQINPTNWEELALDRPTWRRTLKTGAAIYEANRIAAAKVKCEAR 510          
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A654HMC6_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HMC6_9CEST)

HSP 1 Score: 61.2 bits (147), Expect = 4.790e-9
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 1
Query:    1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
            + RM+D RLPK +++G+++ G+   GGQ + +       L+   +N   W   A D   WRRT + GA  + A  IAA KVK   R
Sbjct:    9 LVRMDDERLPKRLLYGDVVTGSRRQGGQIRRYKDTLKSSLKRLQLNPTNWEELALDRPTWRRTVKTGAAIYEANHIAAAKVKREAR 94          
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 6.980e-9
Identity = 32/78 (41.03%), Postives = 42/78 (53.85%), Query Frame = 1
Query:    1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQ----WTTAAQDEGKWRRTAEQGAEHFTAK 222
            V RMED+RLPK ++ GEM  G G  GGQE  W+    +DL AF +  ++    W  +A+D   W    E GA  F  K
Sbjct:  118 VMRMEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRK 195          
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A654HW91_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HW91_9CEST)

HSP 1 Score: 60.5 bits (145), Expect = 9.860e-9
Identity = 32/86 (37.21%), Postives = 45/86 (52.33%), Query Frame = 1
Query:    1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR 258
            + RM+D RLPK +++G++  G+   G Q + +       L+   IN   W   A D   WRRT + GA  + A RIAA KVK   R
Sbjct:  756 LVRMDDERLPKRLIYGDVATGSRRQGSQIRRYKDTLKSSLKRLQINPTNWEEIAHDRPTWRRTVKTGAAIYEANRIAAAKVKREAR 841          
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A6P4ZXC7_BRABE (protocadherin Fat 4-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZXC7_BRABE)

HSP 1 Score: 60.1 bits (144), Expect = 1.370e-8
Identity = 29/77 (37.66%), Postives = 43/77 (55.84%), Query Frame = 1
Query:    1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFTAKRIA 231
            + RM DTRLPK +++ E++ G   VGGQ+K +       L++F I+   W +AAQ+   WR     GA  +   RIA
Sbjct:  302 LVRMPDTRLPKRLLYSELVEGKRSVGGQKKRFKDTLKTTLKSFKIDTSTWESAAQNRAAWRSHISSGATLYEKTRIA 378          
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.630e-8
Identity = 30/72 (41.67%), Postives = 39/72 (54.17%), Query Frame = 1
Query:    1 VARMEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINAD----QWTTAAQDEGKWRRTAEQGA 204
            V RMED RLPK ++ GEM GG    GGQE  W+    +DL AF +  +    +W  +A+D   W    E GA
Sbjct:  123 VMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDGA 194          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106750.576.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI00165228C06.350e-1343.37uncharacterized protein LOC118478942 n=1 Tax=Aplys... [more]
A0A6H5JMA1_9PHAE1.000e-1043.59Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
UPI00035A230D3.100e-1043.02uncharacterized protein LOC101847595 n=1 Tax=Aplys... [more]
A0A7M3PRY6_SPIER7.810e-1038.37Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A7M3PXV5_SPIER2.040e-938.37Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A654HMC6_9CEST4.790e-936.05Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A6H5JHK9_9PHAE6.980e-941.03Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A654HW91_9CEST9.860e-937.21Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A6P4ZXC7_BRABE1.370e-837.66protocadherin Fat 4-like n=1 Tax=Branchiostoma bel... [more]
A0A6H5L6M5_9PHAE1.630e-841.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106750contigF-distichus_contig106750:962..1219 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score72.8
Seed ortholog evalue8.6e-11
Seed eggNOG ortholog6500.XP_005092354.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size258
Cds size249
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.3114188-CDS-F-distichus_contig106750:961..12101622928995.3114188-CDS-F-distichus_contig106750:961..1210Fucus distichus monoicousCDSF-distichus_contig106750 962..1210 -
1690885097.660624-CDS-F-distichus_contig106750:961..12101690885097.660624-CDS-F-distichus_contig106750:961..1210Fucus distichus monoicousCDSF-distichus_contig106750 962..1210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.3314078-UTR-F-distichus_contig106750:1210..12191622928995.3314078-UTR-F-distichus_contig106750:1210..1219Fucus distichus monoicousUTRF-distichus_contig106750 1211..1219 -
1690885097.6735795-UTR-F-distichus_contig106750:1210..12191690885097.6735795-UTR-F-distichus_contig106750:1210..1219Fucus distichus monoicousUTRF-distichus_contig106750 1211..1219 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106750.576.1prot_F-distichus_contig106750.576.1Fucus distichus monoicouspolypeptideF-distichus_contig106750 962..1210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106750.576.1

>prot_F-distichus_contig106750.576.1 ID=prot_F-distichus_contig106750.576.1|Name=mRNA_F-distichus_contig106750.576.1|organism=Fucus distichus monoicous|type=polypeptide|length=83bp
MEDTRLPKCVMFGEMIGGAGCVGGQEKVWMGCFLDDLRAFGINADQWTTA
AQDEGKWRRTAEQGAEHFTAKRIAAEKVKSGLR
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mRNA from alignment at F-distichus_contig106750:962..1219-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106750.576.1 ID=mRNA_F-distichus_contig106750.576.1|Name=mRNA_F-distichus_contig106750.576.1|organism=Fucus distichus monoicous|type=mRNA|length=258bp|location=Sequence derived from alignment at F-distichus_contig106750:962..1219- (Fucus distichus monoicous)
GTGGCGCGCATGGAGGATACGAGACTGCCGAAGTGCGTGATGTTCGGAGA AATGATTGGGGGCGCGGGCTGTGTGGGGGGCCAGGAAAAAGTGTGGATGG GGTGTTTCCTGGACGATCTCAGAGCTTTTGGCATCAACGCCGACCAGTGG ACAACTGCAGCCCAGGACGAGGGGAAATGGCGCAGAACGGCAGAACAAGG AGCGGAACATTTCACGGCAAAACGGATCGCTGCAGAGAAAGTCAAGTCTG GACTACGG
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Coding sequence (CDS) from alignment at F-distichus_contig106750:962..1219-

>mRNA_F-distichus_contig106750.576.1 ID=mRNA_F-distichus_contig106750.576.1|Name=mRNA_F-distichus_contig106750.576.1|organism=Fucus distichus monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at F-distichus_contig106750:962..1219- (Fucus distichus monoicous)
ATGGAGGATACGAGACTGCCGAAGTGCGTGATGTTCGGAGAAATGATTGG
GGGCGCGGGCTGTGTGGGGGGCCAGGAAAAAGTGTGGATGGGGTGTTTCC
TGGACGATCTCAGAGCTTTTGGCATCAACGCCGACCAGTGGACAACTGCA
GCCCAGGACGAGGGGAAATGGCGCAGAACGGCAGAACAAGGAGCGGAACA
TTTCACGGCAAAACGGATCGCTGCAGAGAAAGTCAAGTCTGGACTACGGA
TGGAGGATACGAGACTGCCGAAGTGCGTGATGTTCGGAGAAATGATTGGG
GGCGCGGGCTGTGTGGGGGGCCAGGAAAAAGTGTGGATGGGGTGTTTCCT
GGACGATCTCAGAGCTTTTGGCATCAACGCCGACCAGTGGACAACTGCAG
CCCAGGACGAGGGGAAATGGCGCAGAACGGCAGAACAAGGAGCGGAACAT
TTCACGGCAAAACGGATCGCTGCAGAGAAAGTCAAGTCTGGACTACGG
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