mRNA_F-distichus_contig10673.575.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: D7FRZ5_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ5_ECTSI) HSP 1 Score: 361 bits (926), Expect = 5.220e-120 Identity = 178/264 (67.42%), Postives = 217/264 (82.20%), Query Frame = 1
Query: 1 STVICRDDRDGDLSDDEAVVAGYCLYQYESVKVVNYCVFSDTDVWDTVEQSTMESYLIRFIADVVEARAYVFGXXXXXXXXXXFLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQWNDAGTKSDVVVNATYACAIISFVFAFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVS-SDQVDLSYKTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQV 789
S VICR DR DL ++EAV+AGYC QYESV+VVNYCVF+DTD+WD VEQS + +YL FIADV+ ARAYVFG F+Y+GLLQIP LVA++VWSCV L+L+ LL +GYGLW+TAV W+D GTK D +V A YACA++++V AFLW CLFCFLAKRI+LAIG+IK+AGR+IA+MP+IV WP+VELVA+I F+A+W YAAYTASLG+ITTKTV S + DLSYK Y+FDQQ +YRGWFL+FCLFWTLNFITA GQ+
Sbjct: 33 SVVICRYDRPDDLDNEEAVLAGYCNPQYESVEVVNYCVFTDTDIWDNVEQSDLANYLSSFIADVITARAYVFGFGFGVATLVAFVYIGLLQIPFLVAILVWSCVLLVLLCLLGLGYGLWVTAVDWDDDGTKEDYIVTAAYACAVVAWVLAFLWTCLFCFLAKRIALAIGVIKEAGRSIASMPIIVFWPVVELVASIAFVAIWMYYAAYTASLGDITTKTVESDTGGYDLSYKVYDFDQQVQYRGWFLLFCLFWTLNFITAMGQI 296
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: A0A6H5JW76_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW76_9PHAE) HSP 1 Score: 356 bits (913), Expect = 1.590e-116 Identity = 175/261 (67.05%), Postives = 212/261 (81.23%), Query Frame = 1
Query: 7 VICRDDRDGDLSDDEAVVAGYCLYQYESVKVVNYCVFSDTDVWDTVEQSTMESYLIRFIADVVEARAYVFGXXXXXXXXXXFLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQWNDAGTKSDVVVNATYACAIISFVFAFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVS-SDQVDLSYKTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQ 786
V+CR DR DL D+EAV+AGYC QYESV+VVNYCVF+DTD WD VEQS + +YL FIADV+ ARAYVFG F+Y+GLLQIP LVA++VWSCV L+L+ LL +GYGLW+TAV W+D GTK D +V A Y CA++++V AFLW CLFCFLAKRISLAIG+IK+AGR+IA+MP+IV WP+VELVA+I F+A+W YAAYTASLG+ITTKTV S + DLSYK Y+FDQQ +YRGWFL+FCLFWTLNF+ A GQ
Sbjct: 102 VVCRYDRPDDLDDEEAVLAGYCNPQYESVEVVNYCVFTDTDTWDDVEQSDLANYLSSFIADVITARAYVFGFGFGVATLVAFVYIGLLQIPFLVAILVWSCVLLVLLCLLGLGYGLWVTAVDWDDDGTKEDYIVTAAYVCAVVAWVLAFLWTCLFCFLAKRISLAIGVIKEAGRSIASMPIIVFWPVVELVASIAFVAIWMYYAAYTASLGDITTKTVESDTGGYDLSYKVYDFDQQVQYRGWFLLFCLFWTLNFVAAMGQ 362
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: D8LIJ7_ECTSI (Choline transporter-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIJ7_ECTSI) HSP 1 Score: 169 bits (427), Expect = 1.510e-44 Identity = 95/253 (37.55%), Postives = 147/253 (58.10%), Query Frame = 1
Query: 61 AGYCLYQYESVKVVNYCVFSDTDVWDT-VEQSTMESYLIRFIADVVEARAYVFGXXXXXXXXXXFLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQWNDAGTKSDVVVNATYACAIISFVFAFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVSSDQVDLSYKTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQVCLCIVVCMY 816
AG C+YQ ESV V CVFS+ +V D V+ +YL +DV AR ++FG F YLG+LQ+PGLV +++W +A + L+A+G+G + W G +D V + +++ AFL++CL FL K+I+LA GIIK++ RAI + ++ PL++ A + F+ W VY+ YTAS+ +ITT+ V L+ K++E+ + E RGW+L+F FWT F+ A GQ+ + + V Y
Sbjct: 158 AGVCMYQVESVDFVGRCVFSEPEVLDKFVDVGGDVAYLQEAASDVYAARGWIFGFGFCFSTILGFFYLGMLQLPGLVCMMIWGSIACVFFILVAMGFGFVSLSEDWEGDGEHTDTQVMGSRVTGYLAYGCAFLFLCLIVFLRKQIALANGIIKESVRAIGTVKMMFFMPLLQCAAIVAFLVPWVVYSVYTASMADITTEEVAG-----LTVKSFEYSDEVEKRGWYLLFVFFWTTQFVVAMGQIVVALTVVKY 405
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: A0A835Z6J7_9STRA (Choline transporter-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6J7_9STRA) HSP 1 Score: 157 bits (398), Expect = 1.660e-40 Identity = 90/254 (35.43%), Postives = 141/254 (55.51%), Query Frame = 1
Query: 64 GYCLYQYESVKVVNYCVFSDTDVWDT-VEQSTMESYLIRFIADVVEARAYVFGXXXXXXXXXXFLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQW--NDAGTKSDVVVNATYACAIISFVFAFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVSSDQVDLSYKTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQVCLCIVVCMY 816
G C+YQ ESV V+N+C+F+D + D V ++ SY+ +F+AD+ AR ++ G F+Y LL++PG+VA++ W + ++ A+GYGL+ +W + +DV + I +V A L+ CL F+ +RI LA I+K+A RAI +P ++L P+VE V + F Y Y AS+G+ +T TV L KT + + + GW+L+FCLFWT FI A GQ+ + + V Y
Sbjct: 148 GACMYQIESVDVLNHCLFTDPAIADAFVSLNSQMSYMQQFLADIYTARNWILGFGFGFSLVMGFVYCLLLRVPGVVAIMTWGSILAVIALFAAVGYGLYTKGDEWAADTTNQHTDVQITIARIFGIAGYVLAGLFACLALFMCRRIRLATSIMKEAARAIGKIPAMILMPVVEAVGLVLFFVPLVFYGVYVASMGDFSTTTVAG-----LEVKTVTYGSEVQGMGWYLLFCLFWTTQFIIAMGQIVVALAVVKY 396
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: A0A7S2XX14_9STRA (Choline transporter-like protein (Fragment) n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XX14_9STRA) HSP 1 Score: 149 bits (375), Expect = 2.280e-38 Identity = 91/276 (32.97%), Postives = 139/276 (50.36%), Query Frame = 1
Query: 10 ICRDDRDGDLSDDEAVVAGYCLYQYESVKVVNYCVFSDTDVWDTVEQSTMESY-------LIRFIADVVEARAYVFGXXXXXXXXXXFLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQWNDAGTKSDVVVNATYACAIISFVFAFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVSSDQVDLSYKTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQVCLCIVVCMY 816
IC D+ DG C +Y+S + C+F+D ++ S L D+ A+ Y+ F+YL +L++PGLV +I+W+ + I L A+ YGLW V W D G + V CA I+ V A +W+CL C + K I LA G+I +A R I MPL+ WP+++L+ FM WT Y YTAS+GE +T D ++ Y++D ++RGW+L+FCL WT+ ++ A GQ+ L + V +
Sbjct: 102 ICTDEPDGPEE---------CNVKYQSHPAMGRCIFTDRAIFREFMSSVSGRSKGGSGVTLHSAAKDLWTAKYYILNFGLVVSVVMGFIYLWILRLPGLVGMIIWTSIFAIFFTLAALAYGLWYQGVLWVDDGIHDEYDVLMMKICAGIAGVLAIVWMCLACCMRKNIILAGGVITEAARPILLMPLLFAWPILQLIGVALFMWPWTYYVLYTASMGEWVNET----DAFGMTTPQYQYDDSVQWRGWYLLFCLIWTVEWLVAIGQIVLALSVAQW 364
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: A0A6V2WBV2_HETAK (Choline transporter-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2WBV2_HETAK) HSP 1 Score: 149 bits (376), Expect = 1.560e-37 Identity = 97/264 (36.74%), Postives = 139/264 (52.65%), Query Frame = 1
Query: 13 CRDDRD---GDLSDDEAVVAGYCLYQYESVKVVNYCVFSDTDVWDTVEQSTMESYLIRFIADVVEARAYVFGXXXXXXXXXXFLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQWNDAGTKSDVVVNATYACAIISFVF---AFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVSSDQVDLSYKTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQ 786
C DD D +D V GYC YQY S ++N C+F ++ + V ++ SY F+ DV A+ YV G +YL LL++PG V ++VW + L+ + L A+G GL+ + A + S T + VF A ++VC+ L RI+LA+ I+K+A AI M L++ +PLV++V + F+ W YA YTASLG +T T S S K++ F EYR WFL+FC FWT FI A GQ
Sbjct: 121 CVDDSDIPSAYTTDSLKVAGGYCQYQYASYDILNRCIFQNSTLASLVSDTSQWSYAEDFVGDVWAAKDYVLGIGLGFAIALAIVYLALLRLPGFVVLMVWGSIWLVFLLLAALGGGLFYFGYTQSQAASSSYTSTEIT-CMEVFGGVFGALALVFVCVVLCLRDRITLAVDIMKEAAHAIMDMTLLLFFPLVKVVGFLLFLLPWLYYAVYTASLGSFSTYTTSSG----YSVKSWSFSSDVEYRLWFLLFCFFWTTQFIIAVGQ 379
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: A0A7S2XXR1_9STRA (Choline transporter-like protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XXR1_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.950e-37 Identity = 92/267 (34.46%), Postives = 140/267 (52.43%), Query Frame = 1
Query: 7 VICRDDRDGDLSDDEAVVAGYCLYQYESVKVVNYCVFSDTDVWDT--VEQSTMESYLIRFIADVVEARAYVFGXXXXXXXXXXFLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQWNDAGT--KSDVVVNATYACAIISFVFAFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVSSDQVDLSYKTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQVCL 795
+IC+++ D + V +G C ++Y S C+F+++ + D V S L F AD+ AR YVFG FLY L +PG+++ VWS + LI + LA+G L + +W D + D + I A ++ CL FL KRI LA+GIIK+AGR++ MP I+ +PL+++ + FM W + YTAS+G+I K + ++YK Y + + E RGW+L+F FWT FI A GQ+ L
Sbjct: 118 LICKENVDTSRTFVGLVASGDCQFKYASTNRFGICIFTNSSMNDVLNVYAGDQTSALEEFAADIYTARGYVFGFGFVIAIVMGFLYTWFLHLPGVISTFVWSTIILIFLLKLALGAWLIVKGGEWEDEDPQMREDYEILGLKVLGGIVIAVAVIYACLIIFLRKRIQLAVGIIKEAGRSLMDMPAIIFFPLLQVFGLVLFMVPWVFFVIYTASMGDIEVKQMNG-----VNYKDYVYSAEVEERGWYLLFMWFWTTQFIIALGQIVL 379
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: A0A812RYG8_SYMMI (Choline transporter-like protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812RYG8_SYMMI) HSP 1 Score: 138 bits (347), Expect = 4.730e-34 Identity = 78/204 (38.24%), Postives = 115/204 (56.37%), Query Frame = 1
Query: 178 FIADVVEARAYVFGXXXXXXXXXXFLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQWNDAGTKSDVVVNATYACAIISFVFAFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVSSDQVDLSYKTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQV 789
F AD+ + R Y+FG F YL L+IPG++ ++W+ + I + L L+ + QW + + V A +II FV L+VCL C + KRI LA+GI+K+A RA+AAMP++VL P+ + +A + F+ WT+YA Y AS G+I + + YKT E+DQ T +L+FC FWT FI A GQ+
Sbjct: 46 FFADLFQLRGYIFGFGIGIALFLSFFYLFFLRIPGVLFTMIWTVLIAIFLVLAVGSIMLYTLSQQWANNDDRKTSEVRTLQALSIIGFVLTGLYVCLLCVMRKRIVLALGIVKEASRALAAMPILVLMPVFQALAIVVFLVPWTIYAIYLASSGDIEVHETSDTPGDETQYKTMEYDQNTRLAFLYLLFCWFWTSEFILAVGQI 249
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: A0A7S1VN07_9STRA (Choline transporter-like protein n=2 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VN07_9STRA) HSP 1 Score: 137 bits (344), Expect = 5.730e-33 Identity = 91/254 (35.83%), Postives = 133/254 (52.36%), Query Frame = 1
Query: 64 GYCLYQYESVKVVNYCVFSDTDVWDTVEQSTMESYLIRFI-----------ADVVEARAYVFGXXXXXXXXXXFLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQW--NDAGTKSDVVVNATYACAIISFVFAFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVSSDQVDLSYKTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQ 786
G+ Y +S V++ C F D ++ +T + + I AD+ +RAYV G F Y+ LL++PGL+ +++W+ + + G + + W D T ++ T + SF L + L C L + I LAIG +KQAGRAIA MPLIVL P+++ + I FM V+TVYA Y ASLG +T K +D++ +TYEFD+ E GW+L+FCLFWT NFI A G
Sbjct: 193 GFAYYVGDSYAVLSRC-FLTLDALIAIQDTTNATTTLDRIEAGYEFWNNLYADLWTSRAYVLGFGFGLSLFVSFCYVMLLRLPGLLNMVIWTSLLIANTMFFVAGAYAYRHSKMWAEQDPPTYDQRAIDVTLYGSYASFGVGVLLLLLLCCLRRHIQLAIGCVKQAGRAIARMPLIVLVPILQAIGLIAFMCVFTVYAVYLASLGHVTVKNFPVPGDIDMAVRTYEFDEFVERCGWYLLFCLFWTGNFIVAVGD 445
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Match: A0A6H5L007_9PHAE (Choline transporter-like protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L007_9PHAE) HSP 1 Score: 126 bits (317), Expect = 2.860e-29 Identity = 69/193 (35.75%), Postives = 115/193 (59.59%), Query Frame = 1
Query: 250 FLYLGLLQIPGLVAVIVWSCVALILVALLAIGYGLWITAVQWNDAGTKSDVVVNATYACAIISFVFAFLWVCLFCFLAKRISLAIGIIKQAGRAIAAMPLIVLWPLVELVAAITFMAVWTVYAAYTASLGEITTKTVVSSDQVDLSY----KTYEFDQQTEYRGWFLIFCLFWTLNFITAFGQVCLCIVVCMY 816
F YLG+LQ+PGLV +++W +A + L+A+G+G + W G +D V + +++ AFL++CL FL K+I+LA GIIK++ RAI + ++ PL++ A + F+ W VY+ YTAS+ ++ +V ++ L Y K++E+ + E RGW+L+F FWT F+ A GQ+ + + V Y
Sbjct: 289 FFYLGMLQLPGLVCMMIWGSIACVFFVLVAMGFGFVSLSEDWEGDGEHTDAQVMGSRVTGYLAYGCAFLFLCLIVFLRKQITLANGIIKESVRAIGTVKMMFFMPLLQCAAIVAFLVPWVVYSVYTASMADVR---LVKRCRIRLRYSLTVKSFEYSDEVENRGWYLLFVFFWTTQFVVAMGQIVVALTVVKY 478 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10673.575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10673.575.1 >prot_F-distichus_contig10673.575.1 ID=prot_F-distichus_contig10673.575.1|Name=mRNA_F-distichus_contig10673.575.1|organism=Fucus distichus monoicous|type=polypeptide|length=272bp STVICRDDRDGDLSDDEAVVAGYCLYQYESVKVVNYCVFSDTDVWDTVEQback to top mRNA from alignment at F-distichus_contig10673:307..3755- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10673.575.1 ID=mRNA_F-distichus_contig10673.575.1|Name=mRNA_F-distichus_contig10673.575.1|organism=Fucus distichus monoicous|type=mRNA|length=3449bp|location=Sequence derived from alignment at F-distichus_contig10673:307..3755- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10673:307..3755- >mRNA_F-distichus_contig10673.575.1 ID=mRNA_F-distichus_contig10673.575.1|Name=mRNA_F-distichus_contig10673.575.1|organism=Fucus distichus monoicous|type=CDS|length=1632bp|location=Sequence derived from alignment at F-distichus_contig10673:307..3755- (Fucus distichus monoicous)back to top |