mRNA_F-distichus_contig106724.574.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106724.574.1
Unique NamemRNA_F-distichus_contig106724.574.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106724.574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106724contigF-distichus_contig106724:1002..1931 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size930
Cds size468
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106724.574.1prot_F-distichus_contig106724.574.1Fucus distichus monoicouspolypeptideF-distichus_contig106724 1221..1688 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928994.976424-UTR-F-distichus_contig106724:1001..12201622928994.976424-UTR-F-distichus_contig106724:1001..1220Fucus distichus monoicousUTRF-distichus_contig106724 1002..1220 +
1690885097.5301085-UTR-F-distichus_contig106724:1001..12201690885097.5301085-UTR-F-distichus_contig106724:1001..1220Fucus distichus monoicousUTRF-distichus_contig106724 1002..1220 +
1622928995.024987-UTR-F-distichus_contig106724:1688..19311622928995.024987-UTR-F-distichus_contig106724:1688..1931Fucus distichus monoicousUTRF-distichus_contig106724 1689..1931 +
1690885097.5658028-UTR-F-distichus_contig106724:1688..19311690885097.5658028-UTR-F-distichus_contig106724:1688..1931Fucus distichus monoicousUTRF-distichus_contig106724 1689..1931 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928995.0097404-CDS-F-distichus_contig106724:1220..16881622928995.0097404-CDS-F-distichus_contig106724:1220..1688Fucus distichus monoicousCDSF-distichus_contig106724 1221..1688 +
1690885097.548808-CDS-F-distichus_contig106724:1220..16881690885097.548808-CDS-F-distichus_contig106724:1220..1688Fucus distichus monoicousCDSF-distichus_contig106724 1221..1688 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106724.574.1

>prot_F-distichus_contig106724.574.1 ID=prot_F-distichus_contig106724.574.1|Name=mRNA_F-distichus_contig106724.574.1|organism=Fucus distichus monoicous|type=polypeptide|length=156bp
MTRLGRGHDRMRHKGKPLQGVMIIIVPRYLPQMKRTPCKPTLMYAKRPHA
QKHTYLTCTHTNHMGLAKRFWSSTSSHAPQAVRHLSSGNGKRGASESYPR
GNPALQQNKKSRAESKSVHGTQEGSRSRQHPTPPPHPLLRGSLVLGVTGN
ISYCT*
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mRNA from alignment at F-distichus_contig106724:1002..1931+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106724.574.1 ID=mRNA_F-distichus_contig106724.574.1|Name=mRNA_F-distichus_contig106724.574.1|organism=Fucus distichus monoicous|type=mRNA|length=930bp|location=Sequence derived from alignment at F-distichus_contig106724:1002..1931+ (Fucus distichus monoicous)
TCTGGTTAAGTTCCGGAAATTAGCGACAAAACGAAATCGAATCGGGCACG
GTGGCCTTCCTTTCCAAAAGGGAGGAAAAAGCAAACAGAACAGAGTGGTT
CAACGATTGGGGAGTGTGGGGAGGCGGGGAAGTCACAAATTTCATCCCCC
CGATCGTTGAAAAAGCTCAACAGGGAACGGCGCGGCGTCCGCCGGAGGAT
CCACTCTTTTAACGACAGAATGACTCGACTGGGCAGAGGACACGACAGGA
TGCGACACAAAGGAAAGCCGTTACAAGGAGTTATGATCATCATCGTCCCA
CGCTACCTACCGCAGATGAAACGAACGCCGTGTAAACCCACTCTCATGTA
CGCCAAAAGACCACACGCGCAGAAACACACATACCTTACCTGTACACACA
CAAACCACATGGGCTTAGCGAAACGGTTTTGGAGCAGCACGTCGTCACAC
GCGCCCCAGGCCGTGCGCCATCTTTCCAGCGGAAATGGGAAGAGAGGGGC
CAGCGAGAGCTATCCGCGGGGGAACCCAGCGCTTCAGCAAAACAAAAAAT
CACGCGCAGAAAGTAAAAGCGTACATGGTACACAGGAGGGGAGTCGCTCC
CGTCAACACCCCACCCCACCCCCCCATCCCCTCCTTCGGGGATCACTAGT
GTTGGGGGTTACGGGAAACATAAGTTATTGCACATGAAGATTTAGCGTAC
GCCGAGCTAAGCATTTCTTGGTGACTGTGACTGTGACTGCGATATAGCTG
AGAAAAAGGGTGATCAAAAACTGACGTGCACTGTATGTACCCCGCTGCCA
AAAACAATCACGAGTGATGGAACTCCTTCCCTCCCAGCCCATCCCTTCTC
TCCCCTCCCTTTTTAACTCCCCAACTCCCGCATACCCCCGCTAGAAAGGA
TCTAAAAAATCATTTTCTCTCCATTTGCTC
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Coding sequence (CDS) from alignment at F-distichus_contig106724:1002..1931+

>mRNA_F-distichus_contig106724.574.1 ID=mRNA_F-distichus_contig106724.574.1|Name=mRNA_F-distichus_contig106724.574.1|organism=Fucus distichus monoicous|type=CDS|length=936bp|location=Sequence derived from alignment at F-distichus_contig106724:1002..1931+ (Fucus distichus monoicous)
ATGACTCGACTGGGCAGAGGACACGACAGGATGCGACACAAAGGAAAGCC
GTTACAAGGAGTTATGATCATCATCGTCCCACGCTACCTACCGCAGATGA
AACGAACGCCGTGTAAACCCACTCTCATGTACGCCAAAAGACCACACGCG
CAGAAACACACATACCTTACCTGTACACACACAAACCACATGGGCTTAGC
GAAACGGTTTTGGAGCAGCACGTCGTCACACGCGCCCCAGGCCGTGCGCC
ATCTTTCCAGCGGAAATGGGAAGAGAGGGGCCAGCGAGAGCTATCCGCGG
GGGAACCCAGCGCTTCAGCAAAACAAAAAATCACGCGCAGAAAGTAAAAG
CGTACATGGTACACAGGAGGGGAGTCGCTCCCGTCAACACCCCACCCCAC
CCCCCCATCCCCTCCTTCGGGGATCACTAGTGTTGGGGGTTACGGGAAAC
ATAAGTTATTGCACATGAATGACTCGACTGGGCAGAGGACACGACAGGAT
GCGACACAAAGGAAAGCCGTTACAAGGAGTTATGATCATCATCGTCCCAC
GCTACCTACCGCAGATGAAACGAACGCCGTGTAAACCCACTCTCATGTAC
GCCAAAAGACCACACGCGCAGAAACACACATACCTTACCTGTACACACAC
AAACCACATGGGCTTAGCGAAACGGTTTTGGAGCAGCACGTCGTCACACG
CGCCCCAGGCCGTGCGCCATCTTTCCAGCGGAAATGGGAAGAGAGGGGCC
AGCGAGAGCTATCCGCGGGGGAACCCAGCGCTTCAGCAAAACAAAAAATC
ACGCGCAGAAAGTAAAAGCGTACATGGTACACAGGAGGGGAGTCGCTCCC
GTCAACACCCCACCCCACCCCCCCATCCCCTCCTTCGGGGATCACTAGTG
TTGGGGGTTACGGGAAACATAAGTTATTGCACATGA
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