mRNA_F-distichus_contig106678.571.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106678.571.1
Unique NamemRNA_F-distichus_contig106678.571.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: D7G4I9_ECTSI (Similar to histone H3.2 n=2 Tax=PX clade TaxID=569578 RepID=D7G4I9_ECTSI)

HSP 1 Score: 190 bits (482), Expect = 1.390e-60
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   38 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: A0A329S960_9STRA (Histone domain-containing protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329S960_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.080e-60
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   30 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 128
[Close]
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: W4GZ05_9STRA (Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ05_9STRA)

HSP 1 Score: 189 bits (479), Expect = 3.990e-60
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   38 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: A0A1Z5K8H0_FISSO (Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepID=A0A1Z5K8H0_FISSO)

HSP 1 Score: 189 bits (479), Expect = 3.990e-60
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   38 KPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 136
[Close]
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: A0A485LQE7_9STRA (Aste57867_24473 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LQE7_9STRA)

HSP 1 Score: 189 bits (479), Expect = 8.650e-60
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   62 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 160
[Close]
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: K0S5H6_THAOC (Histone domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5H6_THAOC)

HSP 1 Score: 189 bits (479), Expect = 1.080e-59
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   69 KPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 167
[Close]
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: A0A6V1P6C6_HETAK (Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1P6C6_HETAK)

HSP 1 Score: 187 bits (476), Expect = 1.390e-59
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFK+DLR+QGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   44 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRYQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 142
[Close]
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: A0A7S1BJN3_9STRA (Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A7S1BJN3_9STRA)

HSP 1 Score: 187 bits (476), Expect = 1.790e-59
Identity = 97/99 (97.98%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   52 KPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 150
[Close]
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: K0S7I6_THAOC (Histone domain-containing protein n=8 Tax=Bacillariophyta TaxID=2836 RepID=K0S7I6_THAOC)

HSP 1 Score: 189 bits (479), Expect = 4.100e-59
Identity = 98/99 (98.99%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKST+LLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:  111 KPHRYRPGTVALREIRRYQKSTDLLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 209
[Close]
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Match: K3XCW6_GLOUD (Histone domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3XCW6_GLOUD)

HSP 1 Score: 186 bits (471), Expect = 4.790e-59
Identity = 97/99 (97.98%), Postives = 98/99 (98.99%), Query Frame = 1 
Query:    1 KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 297
            KPHRYRPGTVALREIRRYQKSTELLI KLPFQRLVREIAQDFK+DLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS
Sbjct:   28 KPHRYRPGTVALREIRRYQKSTELLICKLPFQRLVREIAQDFKTDLRFQGSAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS 126
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106678.571.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G4I9_ECTSI1.390e-60100.00Similar to histone H3.2 n=2 Tax=PX clade TaxID=569... [more]
A0A329S960_9STRA3.080e-6098.99Histone domain-containing protein n=2 Tax=Phytopht... [more]
W4GZ05_9STRA3.990e-6098.99Histone H3 n=38 Tax=Oomycota TaxID=4762 RepID=W4GZ... [more]
A0A1Z5K8H0_FISSO3.990e-6098.99Histone H3 n=2 Tax=Bacillariophyta TaxID=2836 RepI... [more]
A0A485LQE7_9STRA8.650e-6098.99Aste57867_24473 protein n=1 Tax=Aphanomyces stella... [more]
K0S5H6_THAOC1.080e-5998.99Histone domain-containing protein n=1 Tax=Thalassi... [more]
A0A6V1P6C6_HETAK1.390e-5997.98Histone H3 n=1 Tax=Heterosigma akashiwo TaxID=2829... [more]
A0A7S1BJN3_9STRA1.790e-5997.98Histone H3 n=22 Tax=Eukaryota TaxID=2759 RepID=A0A... [more]
K0S7I6_THAOC4.100e-5998.99Histone domain-containing protein n=8 Tax=Bacillar... [more]
K3XCW6_GLOUD4.790e-5997.98Histone domain-containing protein n=1 Tax=Globispo... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106678contigF-distichus_contig106678:1600..1899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score193.7
Seed ortholog evalue4e-47
Seed eggNOG ortholog2880.D7FWI7
KEGG koko:K11253
KEGG Pathwayko05034,ko05202,ko05322,map05034,map05202,map05322
Hectar predicted targeting categoryother localisation
GOsGO:0000785,GO:0000786,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031490,GO:0031491,GO:0031492,GO:0031497,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044446,GO:0044464,GO:0044815,GO:0044877,GO:0051276,GO:0065003,GO:0065004,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.protein heterodimerization activity
EggNOG OGsCOG2036@1,KOG1745@2759
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04147
Exons1
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928993.9918656-CDS-F-distichus_contig106678:1599..18991622928993.9918656-CDS-F-distichus_contig106678:1599..1899Fucus distichus monoicousCDSF-distichus_contig106678 1600..1899 -
1690885097.2914166-CDS-F-distichus_contig106678:1599..18991690885097.2914166-CDS-F-distichus_contig106678:1599..1899Fucus distichus monoicousCDSF-distichus_contig106678 1600..1899 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106678.571.1prot_F-distichus_contig106678.571.1Fucus distichus monoicouspolypeptideF-distichus_contig106678 1600..1899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106678.571.1

>prot_F-distichus_contig106678.571.1 ID=prot_F-distichus_contig106678.571.1|Name=mRNA_F-distichus_contig106678.571.1|organism=Fucus distichus monoicous|type=polypeptide|length=100bp
KPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKSDLRFQG
SAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERS*
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mRNA from alignment at F-distichus_contig106678:1600..1899-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106678.571.1 ID=mRNA_F-distichus_contig106678.571.1|Name=mRNA_F-distichus_contig106678.571.1|organism=Fucus distichus monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at F-distichus_contig106678:1600..1899- (Fucus distichus monoicous)
AAGCCCCACCGCTACAGGCCGGGAACCGTCGCCCTGCGCGAGATCCGCCG
TTACCAGAAGTCTACGGAGCTGTTGATCCGTAAGCTGCCCTTCCAGCGCC
TGGTGCGCGAGATCGCCCAAGACTTCAAGAGTGATCTACGCTTCCAAGGC
TCTGCCGTTCTGGCCCTTCAGGAAGCCGCCGAGGCTTATCTCGTGGGCTT
GTTTGAAGACACGAACCTGTGCGCCATCCATGCTAAGCGCGTCACTATCA
TGCCCAAGGACATCCAGCTGGCCAGGCGCATCCGTGGAGAGCGCTCGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig106678:1600..1899-

>mRNA_F-distichus_contig106678.571.1 ID=mRNA_F-distichus_contig106678.571.1|Name=mRNA_F-distichus_contig106678.571.1|organism=Fucus distichus monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at F-distichus_contig106678:1600..1899- (Fucus distichus monoicous)
AAGCCCCACCGCTACAGGCCGGGAACCGTCGCCCTGCGCGAGATCCGCCG
TTACCAGAAGTCTACGGAGCTGTTGATCCGTAAGCTGCCCTTCCAGCGCC
TGGTGCGCGAGATCGCCCAAGACTTCAAGAGTGATCTACGCTTCCAAGGC
TCTGCCGTTCTGGCCCTTCAGGAAGCCGCCGAGGCTTATCTCGTGGGCTT
GTTTGAAGACACGAACCTGTGCGCCATCCATGCTAAGCGCGTCACTATCA
TGCCCAAGGACATCCAGCTGGCCAGGCGCATCCGTGGAGAGCGCTCGTAA
AAGCCCCACCGCTACAGGCCGGGAACCGTCGCCCTGCGCGAGATCCGCCG
TTACCAGAAGTCTACGGAGCTGTTGATCCGTAAGCTGCCCTTCCAGCGCC
TGGTGCGCGAGATCGCCCAAGACTTCAAGAGTGATCTACGCTTCCAAGGC
TCTGCCGTTCTGGCCCTTCAGGAAGCCGCCGAGGCTTATCTCGTGGGCTT
GTTTGAAGACACGAACCTGTGCGCCATCCATGCTAAGCGCGTCACTATCA
TGCCCAAGGACATCCAGCTGGCCAGGCGCATCCGTGGAGAGCGCTCGTAA
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