mRNA_F-distichus_contig106482.552.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106482.552.1
Unique NamemRNA_F-distichus_contig106482.552.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106482.552.1 vs. uniprot
Match: D7FN08_ECTSI (Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN08_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 5.880e-49
Identity = 91/169 (53.85%), Postives = 124/169 (73.37%), Query Frame = 1 
Query:    1 VPNQRTTRKFNLEDAAASDELLTALEEKNIFEVNKLLAELPEGITTVLNTPSLKEKHMLRTPLMAAAATGDYSKWAAMFRAFDEQFVNKLQRDTEMRMQLANRDENGMTLAMIAARSKNVAVVASVMTEIEHTEAKLALEAHDYKRMSLLTHSASVGPAPIFQEVRGSL 507
            VP     R+F+L+DA  SD LLT +E+ +I ++++LL++LP G T+VL TPSL  KH +RTPLMAAAATGD +   A  +A ++Q+ NKL R++EMR QL NRD  GMT  M+AARS +VAV+  ++TEI +TEA   LE HD+K M+LL H+AS GPAPIFQE + ++
Sbjct:   45 VPGLGIERRFSLKDAEESDNLLTCIEDGDIEDLHRLLSDLPGGETSVLTTPSLLAKHKMRTPLMAAAATGDLATCTATLQALNQQYSNKLARESEMRTQLTNRDREGMTALMLAARSSSVAVLGELLTEIYNTEALATLELHDHKHMTLLMHAASNGPAPIFQEAQQAM 213
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BLAST of mRNA_F-distichus_contig106482.552.1 vs. uniprot
Match: D7FST7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FST7_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.950e-11
Identity = 52/166 (31.33%), Postives = 90/166 (54.22%), Query Frame = 1 
Query:   22 RKFNLEDAAASDELLTALEEKNIFEVNKLLAELPEGITTVLNTPSLKEKHMLRTPLMAAAATGDYSKWA----AMFRAFDEQFVNKLQRDTEMRMQLANRDENGMTLAMIAARSKNVAVVASVMTEIEHTEAKLALEAHDYKRMSLLTHSASVGPAPIFQEVRGSL 507
            R+ +  +A +S+ +L A+E  +  ++ + L+   +     +  PS+  +H +RTPLMAAAATG  + +     A+ RA  EQ + +  R +  R QL   DE+GMTL M+AARS +V ++ +V+  +   EA   L   D+   ++L H+A    + +F  +   L
Sbjct:   16 RQTSAREAESSNSILGAVESGDHAKLREGLSGSAKPPANAVLAPSMSFEHRMRTPLMAAAATGSLALFTTVLHAVNRAIGEQRM-ETNRISLRRKQLEYVDESGMTLLMLAARSGSVGILEAVVERVRIVEAPERLLDRDHSATTVLMHAAGARRSAVFTVILDEL 180
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BLAST of mRNA_F-distichus_contig106482.552.1 vs. uniprot
Match: A0A6H5JBB0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBB0_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 7.540e-9
Identity = 43/127 (33.86%), Postives = 77/127 (60.63%), Query Frame = 1 
Query:   22 RKFNLEDAAASDELLTALEEKNIFEVNKLLAELPEGITTVLNTPSLKEKHMLRTPLMAAAATGDYSKWA----AMFRAFDEQFVNKLQRDTEMRMQLANRDENGMTLAMIAARSKNVAVVASVMTEI 390
            R+ +  ++ +S+ +L A+E ++  ++ + L+   +  +  +  PS+  +H +RTPLMAAAATG  + +A    A+ RA  EQ + +  R +  + QL   DE+GMTL M+AARS NV ++ +V+  +
Sbjct:   59 RQTSARESESSNRILGAVESRDHAKLREGLSGSVKPPSNAVLAPSMSFEHRMRTPLMAAAATGSLALFATVLHAVNRAIGEQRM-ETNRISLRKKQLEYMDESGMTLLMLAARSGNVGILEAVVERV 184
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106482.552.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FN08_ECTSI5.880e-4953.85Kinase, NEK n=1 Tax=Ectocarpus siliculosus TaxID=2... [more]
D7FST7_ECTSI1.950e-1131.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JBB0_9PHAE7.540e-933.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106482contigF-distichus_contig106482:272..1399 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-25_001100.2
Exons3
Model size528
Cds size525
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106482.552.1prot_F-distichus_contig106482.552.1Fucus distichus monoicouspolypeptideF-distichus_contig106482 272..1397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928992.0837734-CDS-F-distichus_contig106482:271..5381622928992.0837734-CDS-F-distichus_contig106482:271..538Fucus distichus monoicousCDSF-distichus_contig106482 272..538 +
1690885095.8858578-CDS-F-distichus_contig106482:271..5381690885095.8858578-CDS-F-distichus_contig106482:271..538Fucus distichus monoicousCDSF-distichus_contig106482 272..538 +
1622928992.1009102-CDS-F-distichus_contig106482:888..10231622928992.1009102-CDS-F-distichus_contig106482:888..1023Fucus distichus monoicousCDSF-distichus_contig106482 889..1023 +
1690885095.8970456-CDS-F-distichus_contig106482:888..10231690885095.8970456-CDS-F-distichus_contig106482:888..1023Fucus distichus monoicousCDSF-distichus_contig106482 889..1023 +
1622928992.1159575-CDS-F-distichus_contig106482:1274..13971622928992.1159575-CDS-F-distichus_contig106482:1274..1397Fucus distichus monoicousCDSF-distichus_contig106482 1275..1397 +
1690885095.9081528-CDS-F-distichus_contig106482:1274..13971690885095.9081528-CDS-F-distichus_contig106482:1274..1397Fucus distichus monoicousCDSF-distichus_contig106482 1275..1397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106482.552.1

>prot_F-distichus_contig106482.552.1 ID=prot_F-distichus_contig106482.552.1|Name=mRNA_F-distichus_contig106482.552.1|organism=Fucus distichus monoicous|type=polypeptide|length=175bp
VPNQRTTRKFNLEDAAASDELLTALEEKNIFEVNKLLAELPEGITTVLNT
PSLKEKHMLRTPLMAAAATGDYSKWAAMFRAFDEQFVNKLQRDTEMRMQL
ANRDENGMTLAMIAARSKNVAVVASVMTEIEHTEAKLALEAHDYKRMSLL
THSASVGPAPIFQEVRGSLVAVNGS
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mRNA from alignment at F-distichus_contig106482:272..1399+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106482.552.1 ID=mRNA_F-distichus_contig106482.552.1|Name=mRNA_F-distichus_contig106482.552.1|organism=Fucus distichus monoicous|type=mRNA|length=1128bp|location=Sequence derived from alignment at F-distichus_contig106482:272..1399+ (Fucus distichus monoicous)
GTGCCGAATCAGAGGACGACGCGAAAGTTTAACCTAGAGGACGCGGCTGC
CTCTGATGAGCTGCTAACTGCGCTTGAAGAAAAAAACATCTTCGAAGTGA
ACAAGCTTCTAGCCGAACTGCCCGAAGGAATCACGACAGTTTTGAATACA
CCTAGCCTCAAGGAAAAGCATATGCTTCGGACGCCACTAATGGCTGCGGC
GGCAACAGGAGACTATTCAAAGTGGGCCGCCATGTTTCGCGCTTTCGATG
AGCAGTTCGTCAATAAGGTTCGCCGCAATACGCCTGAGCTTTTGGATCAC
GAGAGTTGATGAACAAATGGGTTAGAAGCTCAACAGAACGTTTGCCAAAG
GACTATAGAAATTGATACTATCAGTTTTGTGTGTACATGAGATGCATGCG
ACTGTCTCCACCATGAAACGAGACTCAAAGCATAAAAACCTCTGATGCTA
TACTTTGAATATTTCGCCAATGGATCTGATGGCTAGTACCTATTTACGAC
CAGTATTGATGAAACATACTGTTGGAGGCCTTGGGAAGTTCGAAGGCCGG
CCTGGATGAAATGCGAGTGCGCTTCATGTTAGACCCATAAAACATGCGCC
CTATGTTGTCTCGACAGCTACAGCGGGACACTGAAATGCGAATGCAACTA
GCTAATCGGGACGAGAATGGAATGACGCTGGCCATGATTGCCGCAAGGAG
CAAAAATGTGGCAGTAGTTGCTTCGGTGATGACGGAAATCGAACATACTG
AGGTAAGCAAAACGGCAGAGTTATACATCGTGAACCGTTTTAGACTGCGT
GTGATCGAACAAAATCGTACTTCTTAGCGTTCGTTATCTCACGGAATAGT
CTATGGGGCCCATAATGTTTACTCCTTCTTACTTTGCGCTGTTAGAGCTG
ACCATGTAAGCGGCCGGCGTAGGTGCTGAAGCGGGGTTTGCACCTTAAGC
CTATCCCTCTGATGCTGATCTTGAACTGAAGTTTTCTCCTGACACCGACA
CAGGCCAAACTTGCGCTCGAAGCGCACGACTACAAGCGCATGTCTTTGCT
GACGCACAGCGCAAGTGTTGGCCCAGCCCCCATTTTCCAGGAGGTGCGCG
GATCTCTTGTTGCGGTGAATGGAAGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig106482:272..1399+

>mRNA_F-distichus_contig106482.552.1 ID=mRNA_F-distichus_contig106482.552.1|Name=mRNA_F-distichus_contig106482.552.1|organism=Fucus distichus monoicous|type=CDS|length=1050bp|location=Sequence derived from alignment at F-distichus_contig106482:272..1399+ (Fucus distichus monoicous)
GTGCCGAATCAGAGGACGACGCGAAAGTTTAACCTAGAGGACGCGGCTGC
CTCTGATGAGCTGCTAACTGCGCTTGAAGAAAAAAACATCTTCGAAGTGA
ACAAGCTTCTAGCCGAACTGCCCGAAGGAATCACGACAGTTTTGAATACA
CCTAGCCTCAAGGAAAAGCATATGCTTCGGACGCCACTAATGGCTGCGGC
GGCAACAGGAGACTATTCAAAGTGGGCCGCCATGTTTCGCGCTTTCGATG
AGCAGTTCGTCAATAAGGTGCCGAATCAGAGGACGACGCGAAAGTTTAAC
CTAGAGGACGCGGCTGCCTCTGATGAGCTGCTAACTGCGCTTGAAGAAAA
AAACATCTTCGAAGTGAACAAGCTTCTAGCCGAACTGCCCGAAGGAATCA
CGACAGTTTTGAATACACCTAGCCTCAAGGAAAAGCATATGCTTCGGACG
CCACTAATGGCTGCGGCGGCAACAGGAGACTATTCAAAGTGGGCCGCCAT
GTTTCGCGCTTTCGATGAGCAGTTCGTCAATAAGCTACAGCGGGACACTG
AAATGCGAATGCAACTAGCTAATCGGGACGAGAATGGAATGACGCTGGCC
ATGATTGCCGCAAGGAGCAAAAATGTGGCAGTAGTTGCTTCGGTGATGAC
GGAAATCGAACATACTGAGCTACAGCGGGACACTGAAATGCGAATGCAAC
TAGCTAATCGGGACGAGAATGGAATGACGCTGGCCATGATTGCCGCAAGG
AGCAAAAATGTGGCAGTAGTTGCTTCGGTGATGACGGAAATCGAACATAC
TGAGGCCAAACTTGCGCTCGAAGCGCACGACTACAAGCGCATGTCTTTGC
TGACGCACAGCGCAAGTGTTGGCCCAGCCCCCATTTTCCAGGAGGTGCGC
GGATCTCTTGTTGCGGTGAATGGAAGTGCCAAACTTGCGCTCGAAGCGCA
CGACTACAAGCGCATGTCTTTGCTGACGCACAGCGCAAGTGTTGGCCCAG
CCCCCATTTTCCAGGAGGTGCGCGGATCTCTTGTTGCGGTGAATGGAAGT
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