mRNA_F-distichus_contig1064.546.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1064.546.1
Unique NamemRNA_F-distichus_contig1064.546.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig1064.546.1 vs. uniprot
Match: D7FID4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FID4_ECTSI)

HSP 1 Score: 60.5 bits (145), Expect = 1.990e-10
Identity = 28/36 (77.78%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:    1 MNEALLLRTLRSYRKVRGPDFHQPATRDSKTSIENG 108
            MNEA LLR LR YRKVRGPDFHQPATR ++  IENG
Sbjct:    1 MNEASLLRALRQYRKVRGPDFHQPATRSNQGKIENG 36
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1064.546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FID4_ECTSI1.990e-1077.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1064contigF-distichus_contig1064:7706..7813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size108
Cds size108
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928991.559772-CDS-F-distichus_contig1064:7705..78131622928991.559772-CDS-F-distichus_contig1064:7705..7813Fucus distichus monoicousCDSF-distichus_contig1064 7706..7813 -
1690885095.4566073-CDS-F-distichus_contig1064:7705..78131690885095.4566073-CDS-F-distichus_contig1064:7705..7813Fucus distichus monoicousCDSF-distichus_contig1064 7706..7813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1064.546.1prot_F-distichus_contig1064.546.1Fucus distichus monoicouspolypeptideF-distichus_contig1064 7706..7813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1064.546.1

>prot_F-distichus_contig1064.546.1 ID=prot_F-distichus_contig1064.546.1|Name=mRNA_F-distichus_contig1064.546.1|organism=Fucus distichus monoicous|type=polypeptide|length=36bp
MNEALLLRTLRSYRKVRGPDFHQPATRDSKTSIENG
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mRNA from alignment at F-distichus_contig1064:7706..7813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1064.546.1 ID=mRNA_F-distichus_contig1064.546.1|Name=mRNA_F-distichus_contig1064.546.1|organism=Fucus distichus monoicous|type=mRNA|length=108bp|location=Sequence derived from alignment at F-distichus_contig1064:7706..7813- (Fucus distichus monoicous)
ATGAACGAAGCACTCCTGCTCCGCACATTGCGGAGTTACCGCAAGGTTCG
CGGGCCGGACTTTCATCAACCGGCCACGAGGGATAGCAAGACCAGCATCG
AGAATGGT
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Coding sequence (CDS) from alignment at F-distichus_contig1064:7706..7813-

>mRNA_F-distichus_contig1064.546.1 ID=mRNA_F-distichus_contig1064.546.1|Name=mRNA_F-distichus_contig1064.546.1|organism=Fucus distichus monoicous|type=CDS|length=216bp|location=Sequence derived from alignment at F-distichus_contig1064:7706..7813- (Fucus distichus monoicous)
ATGAACGAAGCACTCCTGCTCCGCACATTGCGGAGTTACCGCAAGGTTCG
CGGGCCGGACTTTCATCAACCGGCCACGAGGGATAGCAAGACCAGCATCG
AGAATGGTATGAACGAAGCACTCCTGCTCCGCACATTGCGGAGTTACCGC
AAGGTTCGCGGGCCGGACTTTCATCAACCGGCCACGAGGGATAGCAAGAC
CAGCATCGAGAATGGT
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