mRNA_F-distichus_contig106334.540.1 (mRNA) Fucus distichus monoicous
|
Overview
Homology
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: D7FLN1_ECTSI (Asparagine--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLN1_ECTSI) HSP 1 Score: 224 bits (571), Expect = 6.300e-67 Identity = 104/112 (92.86%), Postives = 112/112 (100.00%), Query Frame = 1
Query: 1 GDLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
GDLE+FETCPGGEPGLR+RL+NVL+N+FVRMTYTELV+LVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYN+PC+VTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG
Sbjct: 616 GDLEFFETCPGGEPGLRERLKNVLQNDFVRMTYTELVDLVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNAPCIVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 727
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: W7TB32_9STRA (Asparagine--tRNA ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TB32_9STRA) HSP 1 Score: 156 bits (395), Expect = 3.370e-42 Identity = 76/111 (68.47%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 4 DLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
DL E PGGE GLR+RL+NVLEN FVR+TYTE V + KD KV F V PEWG DLGSEHERY+ E+VY P +VT+YPKDIKAFYM+L+ DGKTV+AMDILVPKIG
Sbjct: 588 DLVLLEKVPGGEAGLRERLRNVLENPFVRITYTEAVATLEKDLAAEKVAFQVKPEWGCDLGSEHERYLTEQVYKRPVIVTNYPKDIKAFYMRLDEDGKTVSAMDILVPKIG 698
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: A0A7S2UGG2_9STRA (Asparagine--tRNA ligase n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UGG2_9STRA) HSP 1 Score: 151 bits (381), Expect = 8.530e-42 Identity = 74/111 (66.67%), Postives = 86/111 (77.48%), Query Frame = 1
Query: 4 DLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
DLE+FE P GE GLR RL+NVL+N F R+TYTE + +++K +E V F P WG DL SEHERY+ EKVY P V+TDYPK+IKAFYMKLNPDGKTVAA DILVPKIG
Sbjct: 236 DLEFFEGTPFGEVGLRDRLRNVLDNPFKRLTYTEAIVVLQKAVEEDGVVFEEKPVWGIDLPSEHERYLCEKVYKMPVVLTDYPKEIKAFYMKLNPDGKTVAAADILVPKIG 346
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: A0A7S4ABG7_9STRA (Asparagine--tRNA ligase n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4ABG7_9STRA) HSP 1 Score: 150 bits (379), Expect = 1.020e-41 Identity = 74/111 (66.67%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 4 DLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
DLE+FE P GE GLR+RL+NVL+N F R+TYTE +E+++K KE V F P WG DL SEHERY+ EKVY P V+ DYPKDIKAFYMKLN D KTVAA DILVPKIG
Sbjct: 210 DLEFFENSPHGEVGLRERLKNVLDNPFKRLTYTEAIEVLQKAVKEDGVVFEEEPIWGIDLPSEHERYLCEKVYKKPVVLMDYPKDIKAFYMKLNDDKKTVAAADILVPKIG 320
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: A0A448ZAT1_9STRA (Asparagine--tRNA ligase n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448ZAT1_9STRA) HSP 1 Score: 152 bits (385), Expect = 1.840e-41 Identity = 75/111 (67.57%), Postives = 85/111 (76.58%), Query Frame = 1
Query: 4 DLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
DLE+FE P GE GLR RL+NVL+N F R+TYTE +E+++K KE VEF P WG DL SEHERY+ EKVY P V+ DYPKDIKAFYMKLN D KTVAA DILVPKIG
Sbjct: 377 DLEFFENSPHGEVGLRDRLKNVLDNPFKRLTYTEAIEVLQKAVKEDGVEFEEEPVWGIDLPSEHERYLCEKVYKKPVVLMDYPKDIKAFYMKLNDDEKTVAAADILVPKIG 487
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: A0A7S0KAB3_9STRA (Asparagine--tRNA ligase n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0KAB3_9STRA) HSP 1 Score: 152 bits (385), Expect = 5.840e-41 Identity = 74/111 (66.67%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 4 DLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
DLE+FE P GE GLR RL+NVLE+ FVR+ YT+ ++L++K EG VEF V PEWG DL SEHERY+ EK+Y P V+TDYPK IKAFYMKLN D KTVAA D+LVPKIG
Sbjct: 515 DLEFFEGHPAGEKGLRDRLRNVLESPFVRLPYTDAIDLLKKAVAEG-VEFEVTPEWGIDLPSEHERYICEKIYKQPVVLTDYPKGIKAFYMKLNDDEKTVAAADVLVPKIG 624
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: A0A7S1B6R5_9STRA (Asparagine--tRNA ligase n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B6R5_9STRA) HSP 1 Score: 152 bits (385), Expect = 7.240e-41 Identity = 71/111 (63.96%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 4 DLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
DLE+FE P GE LR RL+NVL+N F R++YTE +++++K + + +F PEWG DLGSEHERY+ EK+Y P V+TDYPKDIKAFYMKLN DGKTVAA DILVPKIG
Sbjct: 559 DLEFFENSPAGEKDLRARLRNVLDNPFKRLSYTEAIKILQKVVADEEHKFEEYPEWGMDLGSEHERYLCEKIYKKPVVLTDYPKDIKAFYMKLNDDGKTVAAADILVPKIG 669
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: A0A7S2VYS6_9STRA (Asparagine--tRNA ligase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2VYS6_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.650e-40 Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 4 DLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
DLE+FE P GE GLR RL+NVL+N F R+TYTE +E++ K KE V+F V P WG DL SEHERY+ E+VY P V+T+YPK+IKAFYMKL+ DGKTV+A DILVPKIG
Sbjct: 305 DLEFFENSPFGEAGLRDRLKNVLDNPFKRLTYTEAIEILIKAYKEDGVKFEVEPVWGIDLPSEHERYLCEQVYKKPVVLTNYPKEIKAFYMKLDEDGKTVSAADILVPKIG 415
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: A0A835YW11_9STRA (Asparagine--tRNA ligase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW11_9STRA) HSP 1 Score: 149 bits (376), Expect = 1.340e-39 Identity = 74/113 (65.49%), Postives = 86/113 (76.11%), Query Frame = 1
Query: 4 DLEYFET--CPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
DL YFE+ CPGGE LR RL+NVLEN+FVR+TYT V L+ + GKV+F WG DL SEHERY+ E VY P VVT+YPK+IKAFYMKL+ DGKTV+AMDILVPKIG
Sbjct: 576 DLTYFESKDCPGGEADLRARLRNVLENDFVRITYTRAVALLEEHIASGKVKFQNPVSWGVDLASEHERYITETVYKCPVVVTNYPKEIKAFYMKLDADGKTVSAMDILVPKIG 688
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Match: A0A7S2R1X4_9STRA (Asparagine--tRNA ligase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R1X4_9STRA) HSP 1 Score: 149 bits (375), Expect = 1.760e-39 Identity = 72/111 (64.86%), Postives = 87/111 (78.38%), Query Frame = 1
Query: 4 DLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEFSVIPEWGDDLGSEHERYVAEKVYNSPCVVTDYPKDIKAFYMKLNPDGKTVAAMDILVPKIG 336
DLE+FE P GE GLR RL+NVL+N F R+TYTE +E++ K KE V+F V P WG DL SEHERY+ E+VY P V+T+YPK+IKAFYMKL+ DGKTV+A DILVPKIG
Sbjct: 576 DLEFFENSPFGEAGLRDRLKNVLDNPFKRLTYTEAIEILIKAYKEDGVKFEVEPVWGIDLPSEHERYLCEQVYKKPVVLTNYPKEIKAFYMKLDEDGKTVSAADILVPKIG 686 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106334.540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig106334.540.1 >prot_F-distichus_contig106334.540.1 ID=prot_F-distichus_contig106334.540.1|Name=mRNA_F-distichus_contig106334.540.1|organism=Fucus distichus monoicous|type=polypeptide|length=112bp GDLEYFETCPGGEPGLRKRLQNVLENNFVRMTYTELVELVRKDAKEGKVEback to top mRNA from alignment at F-distichus_contig106334:151..1276+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig106334.540.1 ID=mRNA_F-distichus_contig106334.540.1|Name=mRNA_F-distichus_contig106334.540.1|organism=Fucus distichus monoicous|type=mRNA|length=1126bp|location=Sequence derived from alignment at F-distichus_contig106334:151..1276+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig106334:151..1276+ >mRNA_F-distichus_contig106334.540.1 ID=mRNA_F-distichus_contig106334.540.1|Name=mRNA_F-distichus_contig106334.540.1|organism=Fucus distichus monoicous|type=CDS|length=672bp|location=Sequence derived from alignment at F-distichus_contig106334:151..1276+ (Fucus distichus monoicous)back to top |