mRNA_F-distichus_contig106304.538.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106304.538.1
Unique NamemRNA_F-distichus_contig106304.538.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: A0A8H7PJ54_MORIS (Uncharacterized protein n=1 Tax=Mortierella isabellina TaxID=91625 RepID=A0A8H7PJ54_MORIS)

HSP 1 Score: 66.2 bits (160), Expect = 2.030e-10
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1 
Query:  202 RSQHKPGDWDCPSCQFHNFASRQVCFRCDENRPRGP 309
            R+QH+PGDWDCP+C FHNFASR+ CF+C+   P  P
Sbjct:  418 RTQHRPGDWDCPNCSFHNFASRKHCFKCNAENPDAP 453
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: UPI001E672EAC (RNA-binding protein cabeza-like isoform X7 n=1 Tax=Procambarus clarkii TaxID=6728 RepID=UPI001E672EAC)

HSP 1 Score: 63.5 bits (153), Expect = 5.160e-10
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:  169 DSYAPSPRENARSQHKPGDWDCPSCQFHNFASRQVCFRC 285
            D Y+   R ++RS  KPGDWDCPSCQF NFASR  CF+C
Sbjct:   67 DRYSDQDRYSSRSSSKPGDWDCPSCQFSNFASRTACFKC 105
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: A0A813K9Q7_POLGL (Hypothetical protein n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K9Q7_POLGL)

HSP 1 Score: 62.8 bits (151), Expect = 1.990e-9
Identity = 39/112 (34.82%), Postives = 52/112 (46.43%), Query Frame = 1 
Query:    1 CNGCGHHVFASRQACPRCNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHGGTTSWADS---------YAPSPRENARSQHKPGDWDCPSCQFHNFASRQVCFRCDENRPRGP 309
            C  CG+H FASR+ C +C+ AK              +  G YG      GG      +         YAP+P + A+   +PGDW CPSC  HN+ASR+ C RC   +   P
Sbjct:  145 CEACGNHNFASREVCNKCSGAKT-------------DAGGGYG---AVRGGXXXXRPAPSPYQLPQMYAPAPLQ-AQGNMRPGDWACPSCNNHNYASRENCNRCQRPKNTPP 239
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: A0A0P4WHM5_SCYOL (Uncharacterized protein n=2 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WHM5_SCYOL)

HSP 1 Score: 60.5 bits (145), Expect = 4.060e-9
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:  163 WADSYAPSP-----RENARSQHKPGDWDCPSCQFHNFASRQVCFRC 285
            W D Y+        R ++RS  KPGDWDCPSCQF NFASR  CF+C
Sbjct:   19 WGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKC 64
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: UPI001C48D0E0 (RNA-binding protein cabeza-like isoform X6 n=1 Tax=Homarus americanus TaxID=6706 RepID=UPI001C48D0E0)

HSP 1 Score: 61.2 bits (147), Expect = 4.240e-9
Identity = 25/46 (54.35%), Postives = 31/46 (67.39%), Query Frame = 1 
Query:  148 GGTTSWADSYAPSPRENARSQHKPGDWDCPSCQFHNFASRQVCFRC 285
            GG   +++      R ++RS  KPGDWDCPSCQF NFASR  CF+C
Sbjct:   58 GGWDRYSEDSGSRDRYSSRSSSKPGDWDCPSCQFSNFASRTACFKC 103
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: A0A0P4WEJ4_SCYOL (Uncharacterized protein n=2 Tax=Scylla olivacea TaxID=85551 RepID=A0A0P4WEJ4_SCYOL)

HSP 1 Score: 60.5 bits (145), Expect = 7.950e-9
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:  163 WADSYAPSP-----RENARSQHKPGDWDCPSCQFHNFASRQVCFRC 285
            W D Y+        R ++RS  KPGDWDCPSCQF NFASR  CF+C
Sbjct:   19 WGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKC 64
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: A0A8H7Q4G1_9FUNG (Uncharacterized protein n=1 Tax=Umbelopsis vinacea TaxID=44442 RepID=A0A8H7Q4G1_9FUNG)

HSP 1 Score: 61.6 bits (148), Expect = 8.450e-9
Identity = 21/33 (63.64%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  202 RSQHKPGDWDCPSCQFHNFASRQVCFRCDENRP 300
            R+ H+PGDWDCP+C FHNFASR  CF+C+   P
Sbjct:  419 RTSHRPGDWDCPNCYFHNFASRHHCFKCNAENP 451
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: A0A5B7FD34_PORTR (Zinc finger protein VAR3, chloroplastic n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=A0A5B7FD34_PORTR)

HSP 1 Score: 60.5 bits (145), Expect = 9.870e-9
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:  163 WADSYAPSP-----RENARSQHKPGDWDCPSCQFHNFASRQVCFRC 285
            W D Y+        R ++RS  KPGDWDCPSCQF NFASR  CF+C
Sbjct:   19 WGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKC 64
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: UPI001E1CCFA7 (E3 SUMO-protein ligase RanBP2-like isoform X1 n=4 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CCFA7)

HSP 1 Score: 60.5 bits (145), Expect = 1.830e-8
Identity = 26/46 (56.52%), Postives = 30/46 (65.22%), Query Frame = 1 
Query:  163 WADSYAPSP-----RENARSQHKPGDWDCPSCQFHNFASRQVCFRC 285
            W D Y+        R ++RS  KPGDWDCPSCQF NFASR  CF+C
Sbjct:  140 WGDRYSDHDSGSRDRYSSRSNVKPGDWDCPSCQFSNFASRTACFKC 185
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BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Match: A0A068RJJ2_9FUNG (Rna binding protein n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RJJ2_9FUNG)

HSP 1 Score: 60.5 bits (145), Expect = 2.130e-8
Identity = 21/38 (55.26%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:  196 NARSQHKPGDWDCPSCQFHNFASRQVCFRCDENRPRGP 309
            N+R + +PGDW+CP+C FHNFASR+ CF+C+   P  P
Sbjct:  391 NSRRRVRPGDWNCPNCSFHNFASRRNCFKCNAENPNPP 428
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106304.538.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H7PJ54_MORIS2.030e-1063.89Uncharacterized protein n=1 Tax=Mortierella isabel... [more]
UPI001E672EAC5.160e-1064.10RNA-binding protein cabeza-like isoform X7 n=1 Tax... [more]
A0A813K9Q7_POLGL1.990e-934.82Hypothetical protein n=1 Tax=Polarella glacialis T... [more]
A0A0P4WHM5_SCYOL4.060e-956.52Uncharacterized protein n=2 Tax=Scylla olivacea Ta... [more]
UPI001C48D0E04.240e-954.35RNA-binding protein cabeza-like isoform X6 n=1 Tax... [more]
A0A0P4WEJ4_SCYOL7.950e-956.52Uncharacterized protein n=2 Tax=Scylla olivacea Ta... [more]
A0A8H7Q4G1_9FUNG8.450e-963.64Uncharacterized protein n=1 Tax=Umbelopsis vinacea... [more]
A0A5B7FD34_PORTR9.870e-956.52Zinc finger protein VAR3, chloroplastic n=1 Tax=Po... [more]
UPI001E1CCFA71.830e-856.52E3 SUMO-protein ligase RanBP2-like isoform X1 n=4 ... [more]
A0A068RJJ2_9FUNG2.130e-855.26Rna binding protein n=2 Tax=Lichtheimia TaxID=6883... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106304contigF-distichus_contig106304:1611..1934 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score61.2
Seed ortholog evalue3.4e-07
Seed eggNOG ortholog248742.XP_005649113.1
KEGG rclassRC00063
KEGG koko:K15407
KEGG ReactionR03789,R10209
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0097159,GO:1901363
EggNOG free text desc.Zinc finger domain
EggNOG OGs34MUQ@3041,37UMT@33090,COG0343@1,KOG3909@2759,KOG4198@1,KOG4198@2759
EC2.4.2.29
COG Functional cat.J
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928990.7495377-CDS-F-distichus_contig106304:1610..19341622928990.7495377-CDS-F-distichus_contig106304:1610..1934Fucus distichus monoicousCDSF-distichus_contig106304 1611..1934 +
1690885094.671728-CDS-F-distichus_contig106304:1610..19341690885094.671728-CDS-F-distichus_contig106304:1610..1934Fucus distichus monoicousCDSF-distichus_contig106304 1611..1934 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106304.538.1prot_F-distichus_contig106304.538.1Fucus distichus monoicouspolypeptideF-distichus_contig106304 1611..1934 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106304.538.1

>prot_F-distichus_contig106304.538.1 ID=prot_F-distichus_contig106304.538.1|Name=mRNA_F-distichus_contig106304.538.1|organism=Fucus distichus monoicous|type=polypeptide|length=108bp
CNGCGHHVFASRQACPRCNMAKQYHHRDDDHNHLDDEGTGQYGNHEGQHG
GTTSWADSYAPSPRENARSQHKPGDWDCPSCQFHNFASRQVCFRCDENRP
RGPGVHQG
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mRNA from alignment at F-distichus_contig106304:1611..1934+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106304.538.1 ID=mRNA_F-distichus_contig106304.538.1|Name=mRNA_F-distichus_contig106304.538.1|organism=Fucus distichus monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at F-distichus_contig106304:1611..1934+ (Fucus distichus monoicous)
TGCAACGGTTGCGGCCATCACGTCTTCGCCTCTCGACAAGCATGCCCGCG
ATGCAACATGGCAAAGCAGTATCATCACCGCGACGACGATCACAACCACC
TCGATGACGAAGGGACGGGGCAGTACGGCAACCACGAAGGCCAACATGGC
GGAACGACGAGCTGGGCCGACTCTTACGCACCCTCACCGAGGGAAAACGC
TCGCTCTCAACACAAGCCCGGAGACTGGGACTGTCCTTCGTGCCAGTTCC
ACAACTTCGCGAGTCGGCAAGTGTGCTTTCGCTGCGATGAAAACCGGCCG
CGGGGGCCTGGCGTCCACCAGGGC
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Coding sequence (CDS) from alignment at F-distichus_contig106304:1611..1934+

>mRNA_F-distichus_contig106304.538.1 ID=mRNA_F-distichus_contig106304.538.1|Name=mRNA_F-distichus_contig106304.538.1|organism=Fucus distichus monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at F-distichus_contig106304:1611..1934+ (Fucus distichus monoicous)
TGCAACGGTTGCGGCCATCACGTCTTCGCCTCTCGACAAGCATGCCCGCG
ATGCAACATGGCAAAGCAGTATCATCACCGCGACGACGATCACAACCACC
TCGATGACGAAGGGACGGGGCAGTACGGCAACCACGAAGGCCAACATGGC
GGAACGACGAGCTGGGCCGACTCTTACGCACCCTCACCGAGGGAAAACGC
TCGCTCTCAACACAAGCCCGGAGACTGGGACTGTCCTTCGTGCCAGTTCC
ACAACTTCGCGAGTCGGCAAGTGTGCTTTCGCTGCGATGAAAACCGGCCG
CGGGGGCCTGGCGTCCACCAGGGCTGCAACGGTTGCGGCCATCACGTCTT
CGCCTCTCGACAAGCATGCCCGCGATGCAACATGGCAAAGCAGTATCATC
ACCGCGACGACGATCACAACCACCTCGATGACGAAGGGACGGGGCAGTAC
GGCAACCACGAAGGCCAACATGGCGGAACGACGAGCTGGGCCGACTCTTA
CGCACCCTCACCGAGGGAAAACGCTCGCTCTCAACACAAGCCCGGAGACT
GGGACTGTCCTTCGTGCCAGTTCCACAACTTCGCGAGTCGGCAAGTGTGC
TTTCGCTGCGATGAAAACCGGCCGCGGGGGCCTGGCGTCCACCAGGGC
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