mRNA_F-distichus_contig10624.533.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10624.533.1
Unique NamemRNA_F-distichus_contig10624.533.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A6H5GI29_9HEMI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GI29_9HEMI)

HSP 1 Score: 66.6 bits (161), Expect = 2.170e-11
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 IDEIIYIEIPEKFQELPGAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            ++E IY+  P  F E  G V RL KA+YGL QAGRCWN K  + +  + F ++K+DPC+
Sbjct:  344 LNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCI 402          
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A6H5GGZ1_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GGZ1_9HEMI)

HSP 1 Score: 66.6 bits (161), Expect = 2.180e-11
Identity = 28/59 (47.46%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 IDEIIYIEIPEKFQELPGAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            ++E IY+  P  F E  G V RL KA+YGL QAGRCWN K  + +  + F ++K+DPC+
Sbjct:  949 LNEEIYVRPPANFSEPDGQVWRLKKAVYGLKQAGRCWNEKITEVLAQMKFHRSKSDPCI 1007          
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A6H5FUQ5_9HEMI (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5FUQ5_9HEMI)

HSP 1 Score: 65.5 bits (158), Expect = 5.550e-11
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 IDEIIYIEIPEKFQELPGAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            +DE IY++ P+ F +  G V RL +++YGL QA RCWN +F D ++ IG   ++ADPC+
Sbjct:  453 LDETIYMQQPDGFNDETGRVCRLTRSLYGLKQAPRCWNKRFVDYLSKIGLHASEADPCL 511          
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A6H5GIQ8_9HEMI (Uncharacterized protein (Fragment) n=2 Tax=Nesidiocoris tenuis TaxID=355587 RepID=A0A6H5GIQ8_9HEMI)

HSP 1 Score: 65.5 bits (158), Expect = 5.580e-11
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 IDEIIYIEIPEKFQELPGAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            +DE IY++ P+ F +  G V RL +++YGL QA RCWN +F D ++ IG   ++ADPC+
Sbjct:  954 LDETIYMQQPDGFNDETGRVCRLTRSLYGLKQAPRCWNKRFVDYLSKIGLHASEADPCL 1012          
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A8I6TLX8_CIMLE (Integrase catalytic domain-containing protein n=1 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6TLX8_CIMLE)

HSP 1 Score: 62.4 bits (150), Expect = 6.770e-10
Identity = 28/60 (46.67%), Postives = 41/60 (68.33%), Query Frame = 1
Query:    1 IDEIIYIEIPEKFQELP-GAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            ID+ IY+  PE+ +  P G V  L +A+YGL Q+GRCWN +    +T +G +Q+KADPC+
Sbjct:  480 IDKEIYVIPPEEMKNKPKGKVWLLKRAMYGLKQSGRCWNQRLHTVMTGLGLQQSKADPCI 539          
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A2S2NPY8_SCHGA (Copia protein (Fragment) n=1 Tax=Schizaphis graminum TaxID=13262 RepID=A0A2S2NPY8_SCHGA)

HSP 1 Score: 62.0 bits (149), Expect = 9.190e-10
Identity = 29/59 (49.15%), Postives = 39/59 (66.10%), Query Frame = 1
Query:    1 IDEIIYIEIPEKFQELPGAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            ++E IYIE P  F E    V RL+KA+YGL QA +CWNN+F   +T IGF ++  D C+
Sbjct:  184 VNEEIYIEQPCGFSENNNLVCRLHKALYGLKQASKCWNNRFHQFLTKIGFTRSNTDHCL 242          
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A0A9X2C2_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X2C2_LYGHE)

HSP 1 Score: 60.1 bits (144), Expect = 1.170e-9
Identity = 29/61 (47.54%), Postives = 40/61 (65.57%), Query Frame = 1
Query:    1 IDEIIYIEIPEKFQELP--GAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            I+E IY+  P +  E    G V RL+KA+YGL Q+GRCWNNK    +  +G +Q+ ADPC+
Sbjct:  100 IEEEIYVLPPPELLEPAENGKVWRLHKAMYGLKQSGRCWNNKIDSVLRELGLKQSSADPCI 160          
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A0A9XEE3_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9XEE3_LYGHE)

HSP 1 Score: 61.2 bits (147), Expect = 1.710e-9
Identity = 29/60 (48.33%), Postives = 38/60 (63.33%), Query Frame = 1
Query:    1 IDEIIYIEIP-EKFQELPGAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            + E IY+  P E      G V RL KAIYGL QAGRCWN K C  +  + F++++ADPC+
Sbjct:   96 LGEEIYVRPPPELLNPAEGKVWRLRKAIYGLKQAGRCWNAKICSVLKKMKFKKSEADPCI 155          
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A0C3AKI0_9AGAM (Uncharacterized protein (Fragment) n=1 Tax=Serendipita vermifera MAFF 305830 TaxID=933852 RepID=A0A0C3AKI0_9AGAM)

HSP 1 Score: 61.2 bits (147), Expect = 1.740e-9
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1
Query:    1 IDEIIYIEIPEKFQELPGAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            ++E I++E PE F +  G V RL   +YGL QAGR WN K    +T +GF +  ADPCV
Sbjct:  976 LEEEIFMEQPEGFNDGSGRVCRLKLPLYGLKQAGRMWNKKLNAQLTTLGFNRTNADPCV 1034          
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Match: A0A0J7JZ17_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7JZ17_LASNI)

HSP 1 Score: 60.8 bits (146), Expect = 2.230e-9
Identity = 25/59 (42.37%), Postives = 41/59 (69.49%), Query Frame = 1
Query:    1 IDEIIYIEIPEKFQELPGAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGFEQAKADPCV 177
            ++EIIY+  PE + +    V +L K++YGL QA RCWN +F +  + +GF+ ++ADPC+
Sbjct:   17 LEEIIYMRQPEGYDDSSSRVCQLKKSLYGLKQAPRCWNKRFGNFFSKLGFKVSEADPCL 75          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10624.533.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5GI29_9HEMI2.170e-1147.46Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5GGZ1_9HEMI2.180e-1147.46Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5FUQ5_9HEMI5.550e-1145.76Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5GIQ8_9HEMI5.580e-1145.76Uncharacterized protein (Fragment) n=2 Tax=Nesidio... [more]
A0A8I6TLX8_CIMLE6.770e-1046.67Integrase catalytic domain-containing protein n=1 ... [more]
A0A2S2NPY8_SCHGA9.190e-1049.15Copia protein (Fragment) n=1 Tax=Schizaphis gramin... [more]
A0A0A9X2C2_LYGHE1.170e-947.54Retrovirus-related Pol polyprotein from transposon... [more]
A0A0A9XEE3_LYGHE1.710e-948.33Retrovirus-related Pol polyprotein from transposon... [more]
A0A0C3AKI0_9AGAM1.740e-947.46Uncharacterized protein (Fragment) n=1 Tax=Serendi... [more]
A0A0J7JZ17_LASNI2.230e-942.37Integrase core domain protein n=1 Tax=Lasius niger... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10624contigF-distichus_contig10624:1637..1813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928989.9544802-CDS-F-distichus_contig10624:1636..18131622928989.9544802-CDS-F-distichus_contig10624:1636..1813Fucus distichus monoicousCDSF-distichus_contig10624 1637..1813 -
1690885094.2072387-CDS-F-distichus_contig10624:1636..18131690885094.2072387-CDS-F-distichus_contig10624:1636..1813Fucus distichus monoicousCDSF-distichus_contig10624 1637..1813 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10624.533.1prot_F-distichus_contig10624.533.1Fucus distichus monoicouspolypeptideF-distichus_contig10624 1637..1813 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10624.533.1

>prot_F-distichus_contig10624.533.1 ID=prot_F-distichus_contig10624.533.1|Name=mRNA_F-distichus_contig10624.533.1|organism=Fucus distichus monoicous|type=polypeptide|length=59bp
IDEIIYIEIPEKFQELPGAVGRLNKAIYGLVQAGRCWNNKFCDDVTAIGF
EQAKADPCV
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mRNA from alignment at F-distichus_contig10624:1637..1813-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10624.533.1 ID=mRNA_F-distichus_contig10624.533.1|Name=mRNA_F-distichus_contig10624.533.1|organism=Fucus distichus monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at F-distichus_contig10624:1637..1813- (Fucus distichus monoicous)
ATTGACGAAATAATATACATTGAGATCCCCGAGAAGTTCCAGGAGCTTCC GGGGGCAGTGGGACGGCTGAACAAGGCCATTTACGGACTCGTACAGGCGG GGAGGTGCTGGAACAACAAGTTCTGTGACGACGTGACGGCGATTGGATTC GAGCAGGCAAAAGCGGATCCGTGTGTG
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Coding sequence (CDS) from alignment at F-distichus_contig10624:1637..1813-

>mRNA_F-distichus_contig10624.533.1 ID=mRNA_F-distichus_contig10624.533.1|Name=mRNA_F-distichus_contig10624.533.1|organism=Fucus distichus monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at F-distichus_contig10624:1637..1813- (Fucus distichus monoicous)
ATTGACGAAATAATATACATTGAGATCCCCGAGAAGTTCCAGGAGCTTCC
GGGGGCAGTGGGACGGCTGAACAAGGCCATTTACGGACTCGTACAGGCGG
GGAGGTGCTGGAACAACAAGTTCTGTGACGACGTGACGGCGATTGGATTC
GAGCAGGCAAAAGCGGATCCGTGTGTGATTGACGAAATAATATACATTGA
GATCCCCGAGAAGTTCCAGGAGCTTCCGGGGGCAGTGGGACGGCTGAACA
AGGCCATTTACGGACTCGTACAGGCGGGGAGGTGCTGGAACAACAAGTTC
TGTGACGACGTGACGGCGATTGGATTCGAGCAGGCAAAAGCGGATCCGTG
TGTG
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