mRNA_F-distichus_contig106239.532.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: A0A6H5JQT1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQT1_9PHAE) HSP 1 Score: 101 bits (251), Expect = 1.020e-24 Identity = 54/73 (73.97%), Postives = 58/73 (79.45%), Query Frame = 1
Query: 55 LEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYDSSIVEEELQV 273
LE AMA RR RPSLLLPAWRAVGFAVGTGATALLP E SAKV AI++ V E YD NIR MYD+ IV EE +V
Sbjct: 79 LESAMANRRARPSLLLPAWRAVGFAVGTGATALLPAETSAKVGAAISRAVLEHYDENIRAMYDARIVNEEQEV 151
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: D7FX83_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX83_ECTSI) HSP 1 Score: 95.1 bits (235), Expect = 6.010e-24 Identity = 50/66 (75.76%), Postives = 54/66 (81.82%), Query Frame = 1
Query: 67 MAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYDSSIVEEE 264
MA RR RPSLLLPAWRAVGFAVGTGATALLP +ASAKV AI++ V E YD NIR MYD+ IV EE
Sbjct: 1 MANRRARPSLLLPAWRAVGFAVGTGATALLPADASAKVGAAISRAVLEHYDENIRAMYDARIVAEE 66
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: A0A498L9L3_LABRO (5-demethoxyubiquinone mitochondrial-like protein n=1 Tax=Labeo rohita TaxID=84645 RepID=A0A498L9L3_LABRO) HSP 1 Score: 51.6 bits (122), Expect = 3.460e-6 Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1
Query: 67 MAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYD 243
+A+ R RP+LLLP W VGFA+G G +ALL E + A+ +++SE Y++ IRT+ +
Sbjct: 50 LAENRVRPTLLLPLWNIVGFALGAG-SALLGKEGAMACTVAVEESISEHYNSQIRTLME 107
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: A0A3M6UW81_POCDA (Uncharacterized protein (Fragment) n=3 Tax=Pocilloporidae TaxID=46729 RepID=A0A3M6UW81_POCDA) HSP 1 Score: 50.8 bits (120), Expect = 1.180e-5 Identity = 26/71 (36.62%), Postives = 41/71 (57.75%), Query Frame = 1
Query: 49 KQLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYDSSIVEE 261
K+ E +A+RR RP+ L+P W G+ +G G TALL EA+ A+ + +SE YD +R + + +E
Sbjct: 75 KKFEQIVAERRVRPTALIPLWNIAGYVLGAG-TALLGKEAAMACTVAVEEVISEHYDNQLRELLVEGVTDE 144
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: H3A8N6_LATCH (5-demethoxyubiquinone hydroxylase, mitochondrial n=1 Tax=Latimeria chalumnae TaxID=7897 RepID=H3A8N6_LATCH) HSP 1 Score: 50.8 bits (120), Expect = 1.910e-5 Identity = 26/59 (44.07%), Postives = 38/59 (64.41%), Query Frame = 1
Query: 67 MAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYD 243
M + R RP++LLP W VGFA+G G TALL E + A+ +++SE Y+ IRT+ +
Sbjct: 108 MVEHRVRPTILLPFWNVVGFALGAG-TALLGKEGAMACTVAVEESISEHYNNQIRTLME 165
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: UPI0004D053C7 (ubiquinone biosynthesis protein COQ7 homolog n=1 Tax=Galeopterus variegatus TaxID=482537 RepID=UPI0004D053C7) HSP 1 Score: 48.5 bits (114), Expect = 3.760e-5 Identity = 33/94 (35.11%), Postives = 50/94 (53.19%), Query Frame = 1
Query: 1 LLPCHIPSFWNI-RATDKQLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMY--DSSIVEEELQV 273
L C + W+ +A K+ M R RP++L+P W +GFA+G G TALL E + A+ ++++ Y+ IRT+ D EE LQV
Sbjct: 16 LFLCFLQKMWDQEKAHLKKFNELMVGFRVRPTILMPFWNVLGFALGAG-TALLGKEGAMACTVAVEESIAHHYNNQIRTLMEEDPDKYEELLQV 108
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: A0A0R3SZZ1_RODNA (Uncharacterized protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3SZZ1_RODNA) HSP 1 Score: 49.3 bits (116), Expect = 4.910e-5 Identity = 27/63 (42.86%), Postives = 36/63 (57.14%), Query Frame = 1
Query: 52 QLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMY 240
+ E M RTRPS L+P W+A GFA G T LL EA+ A+ V+EQY+ IR ++
Sbjct: 60 KFEQLMPLNRTRPSALMPVWKAAGFAFGI-TTGLLGEEATKSFNSAVETVVAEQYNHQIRELF 121
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Match: UPI00112C02E4 (5-demethoxyubiquinone hydroxylase, mitochondrial isoform X1 n=3 Tax=Rhinatrema bivittatum TaxID=194408 RepID=UPI00112C02E4) HSP 1 Score: 49.7 bits (117), Expect = 5.030e-5 Identity = 27/65 (41.54%), Postives = 38/65 (58.46%), Query Frame = 1
Query: 49 KQLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATALLPPEASAKVEGAIAKTVSEQYDANIRTMYD 243
K M R RP++LLP W VGFA+G G TALL E + A+ +++SE Y+ IRT+ +
Sbjct: 101 KTFNELMIAHRVRPTILLPFWNVVGFALGAG-TALLGKEGAMACTVAVEESISEHYNNQIRTLME 164 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106239.532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig106239.532.1 >prot_F-distichus_contig106239.532.1 ID=prot_F-distichus_contig106239.532.1|Name=mRNA_F-distichus_contig106239.532.1|organism=Fucus distichus monoicous|type=polypeptide|length=91bp LLPCHIPSFWNIRATDKQLEGAMAQRRTRPSLLLPAWRAVGFAVGTGATAback to top mRNA from alignment at F-distichus_contig106239:1409..1681+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig106239.532.1 ID=mRNA_F-distichus_contig106239.532.1|Name=mRNA_F-distichus_contig106239.532.1|organism=Fucus distichus monoicous|type=mRNA|length=273bp|location=Sequence derived from alignment at F-distichus_contig106239:1409..1681+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig106239:1409..1681+ >mRNA_F-distichus_contig106239.532.1 ID=mRNA_F-distichus_contig106239.532.1|Name=mRNA_F-distichus_contig106239.532.1|organism=Fucus distichus monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at F-distichus_contig106239:1409..1681+ (Fucus distichus monoicous)back to top |