mRNA_F-distichus_contig106088.518.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig106088.518.1
Unique NamemRNA_F-distichus_contig106088.518.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: D7FUP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUP2_ECTSI)

HSP 1 Score: 119 bits (299), Expect = 2.310e-33
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 1
Query:   52 VTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 255
            V KMYEARLKE NP QVHITYDITDLY FID+LGDLSALV + +TGMY PHGKAWIKE+LFK+FQQQA
Sbjct:   32 VVKMYEARLKEVNPRQVHITYDITDLYGFIDELGDLSALVANTDTGMYTPHGKAWIKEYLFKYFQQQA 99          
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: A0A7S2V253_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V253_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.330e-20
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 1
Query:   25 EWFSVLSSGVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 255
            E   +    V KMYE RLK+ NP   HITYDI+DL+ ++D L +LSAL +D+ETG Y P+GK WIK+ +F+  + QA
Sbjct:   47 ETIKMAMDSVIKMYETRLKQVNPDAAHITYDISDLFGYVDTLPELSALAYDNETGQYAPYGKEWIKQRIFQHLRSQA 123          
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: A0A067C2K0_SAPPC (Enhancer of rudimentary homolog n=11 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067C2K0_SAPPC)

HSP 1 Score: 86.3 bits (212), Expect = 4.450e-20
Identity = 41/70 (58.57%), Postives = 52/70 (74.29%), Query Frame = 1
Query:   49 GVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQAA 258
            GV KMYEA+LK+ NPS+ +ITYDI DLY +ID L DLS LV D ET  Y+P GK WIK+ +F+  + QA+
Sbjct:   36 GVVKMYEAKLKQLNPSKRNITYDIQDLYNYIDSLADLSTLVLDLETKTYLPSGKEWIKKKIFQVLRNQAS 105          
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: W7TPS2_9STRA (Enhancer of rudimentary homolog n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPS2_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 8.950e-20
Identity = 44/85 (51.76%), Postives = 55/85 (64.71%), Query Frame = 1
Query:    1 RGMFTLPTEWFSVLSSGVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 255
            R  F  PT + ++    V KMYE +LK+ NPS  HITYDIT L RF+DDL DLSALV D  T  Y PH K W+K  +++  +QQA
Sbjct:   19 RTFFDFPTVYEAM--DEVVKMYEKQLKQLNPSIPHITYDITHLLRFVDDLVDLSALVFDPRTKQYSPHSKEWVKSKIYENLKQQA 101          
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: H3GGY0_PHYRM (Enhancer of rudimentary homolog n=14 Tax=Oomycota TaxID=4762 RepID=H3GGY0_PHYRM)

HSP 1 Score: 85.1 bits (209), Expect = 1.300e-19
Identity = 42/69 (60.87%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   49 GVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 255
            GV KMYEA+LK+ NPS  +ITYDI DLY +ID L DLSALV D ET  Y+P GK WIK+ +F+  + QA
Sbjct:   37 GVVKMYEAKLKQLNPSMKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 105          
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: M4B8I6_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B8I6_HYAAE)

HSP 1 Score: 82.8 bits (203), Expect = 4.260e-19
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   49 GVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 255
            GV KMYEA+LK+ NP   +ITYDI DLY +ID L DLSALV D ET  Y+P GK WIK+ +F+  + QA
Sbjct:    3 GVVKMYEAKLKQLNPDLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 71          
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: W2GHL6_PHYPR (Enhancer of rudimentary homolog n=9 Tax=Phytophthora TaxID=4783 RepID=W2GHL6_PHYPR)

HSP 1 Score: 83.2 bits (204), Expect = 7.490e-19
Identity = 41/69 (59.42%), Postives = 51/69 (73.91%), Query Frame = 1
Query:   49 GVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQA 255
            GV KMYEA+LK+ NP+  +ITYDI DLY +ID L DLSALV D ET  Y+P GK WIK+ +F+  + QA
Sbjct:   37 GVVKMYEAKLKQLNPNLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQA 105          
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: A0A3R7W6D4_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3R7W6D4_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 9.070e-19
Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
Query:   49 GVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQAA 258
            GV KMYEA+LK+ NP   +ITYDI DLY +ID L DLSALV D ET  Y+P GK WIK+ +F+  + QAA
Sbjct:   85 GVVKMYEAKLKQLNPDLKNITYDIQDLYTYIDSLTDLSALVLDLETKTYLPCGKEWIKKKVFQVLKNQAA 154          
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: A0A0N4UZR5_ENTVE (Enhancer of rudimentary homolog n=2 Tax=Oxyuridae TaxID=51026 RepID=A0A0N4UZR5_ENTVE)

HSP 1 Score: 82.8 bits (203), Expect = 9.280e-19
Identity = 37/71 (52.11%), Postives = 48/71 (67.61%), Query Frame = 1
Query:   49 GVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQAAQ 261
            GV K++E  LK+ NP    ITYD+ +L+ FID LGDLS LV +D T  Y PH K WIKE ++K  Q+QA +
Sbjct:   31 GVCKIFEEHLKKLNPKSASITYDVQNLFHFIDRLGDLSCLVFNDATSTYAPHNKVWIKEQIYKMLQRQATK 101          
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Match: A0A267F8W9_9PLAT (Uncharacterized protein (Fragment) n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267F8W9_9PLAT)

HSP 1 Score: 81.6 bits (200), Expect = 1.870e-18
Identity = 37/71 (52.11%), Postives = 49/71 (69.01%), Query Frame = 1
Query:   49 GVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGDLSALVHDDETGMYIPHGKAWIKEFLFKFFQQQAAQ 261
            G+ K+YE  LK  NP+   ITYDI+ L++FID LGDLS LV +  TG Y+PH K WIKE ++   ++QA Q
Sbjct:   18 GICKIYEEHLKVSNPNSPSITYDISQLFQFIDRLGDLSCLVLNQTTGTYVPHNKDWIKEKIYVLLRKQAGQ 88          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig106088.518.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUP2_ECTSI2.310e-3382.35Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2V253_9STRA1.330e-2050.65Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067C2K0_SAPPC4.450e-2058.57Enhancer of rudimentary homolog n=11 Tax=Saprolegn... [more]
W7TPS2_9STRA8.950e-2051.76Enhancer of rudimentary homolog n=2 Tax=Monodopsid... [more]
H3GGY0_PHYRM1.300e-1960.87Enhancer of rudimentary homolog n=14 Tax=Oomycota ... [more]
M4B8I6_HYAAE4.260e-1959.42Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
W2GHL6_PHYPR7.490e-1959.42Enhancer of rudimentary homolog n=9 Tax=Phytophtho... [more]
A0A3R7W6D4_9STRA9.070e-1960.00Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A0N4UZR5_ENTVE9.280e-1952.11Enhancer of rudimentary homolog n=2 Tax=Oxyuridae ... [more]
A0A267F8W9_9PLAT1.870e-1852.11Uncharacterized protein (Fragment) n=1 Tax=Macrost... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig106088contigF-distichus_contig106088:127..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.3
Seed ortholog evalue2.2e-25
Seed eggNOG ortholog2880.D7FUP2
Preferred nameCLEC2L
KEGG koko:K17086
Hectar predicted targeting categoryother localisation
EggNOG free text desc.positive regulation of Notch signaling pathway
EggNOG OGsKOG1766@1,KOG1766@2759
Ec32 ortholog descriptionEnhancer of rudimentary
Ec32 orthologEc-26_002200.1
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04147
Exons2
Model size267
Cds size261
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig106088.518.1prot_F-distichus_contig106088.518.1Fucus distichus monoicouspolypeptideF-distichus_contig106088 133..690 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.3913767-UTR-F-distichus_contig106088:126..1321622928987.3913767-UTR-F-distichus_contig106088:126..132Fucus distichus monoicousUTRF-distichus_contig106088 127..132 +
1690885092.953398-UTR-F-distichus_contig106088:126..1321690885092.953398-UTR-F-distichus_contig106088:126..132Fucus distichus monoicousUTRF-distichus_contig106088 127..132 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928987.408906-CDS-F-distichus_contig106088:132..2961622928987.408906-CDS-F-distichus_contig106088:132..296Fucus distichus monoicousCDSF-distichus_contig106088 133..296 +
1690885092.9636564-CDS-F-distichus_contig106088:132..2961690885092.9636564-CDS-F-distichus_contig106088:132..296Fucus distichus monoicousCDSF-distichus_contig106088 133..296 +
1622928987.4262779-CDS-F-distichus_contig106088:593..6901622928987.4262779-CDS-F-distichus_contig106088:593..690Fucus distichus monoicousCDSF-distichus_contig106088 594..690 +
1690885092.9716234-CDS-F-distichus_contig106088:593..6901690885092.9716234-CDS-F-distichus_contig106088:593..690Fucus distichus monoicousCDSF-distichus_contig106088 594..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig106088.518.1

>prot_F-distichus_contig106088.518.1 ID=prot_F-distichus_contig106088.518.1|Name=mRNA_F-distichus_contig106088.518.1|organism=Fucus distichus monoicous|type=polypeptide|length=87bp
MFTLPTEWFSVLSSGVTKMYEARLKEKNPSQVHITYDITDLYRFIDDLGD
LSALVHDDETGMYIPHGKAWIKEFLFKFFQQQAAQK*
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mRNA from alignment at F-distichus_contig106088:127..690+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig106088.518.1 ID=mRNA_F-distichus_contig106088.518.1|Name=mRNA_F-distichus_contig106088.518.1|organism=Fucus distichus monoicous|type=mRNA|length=564bp|location=Sequence derived from alignment at F-distichus_contig106088:127..690+ (Fucus distichus monoicous)
AGAGGCATGTTTACTCTTCCGACTGAATGGTTTTCCGTACTTTCTTCAGG CGTGACGAAGATGTACGAGGCGCGTTTGAAGGAGAAAAACCCGAGCCAGG TGCACATCACGTACGACATCACTGATCTCTACCGCTTCATTGACGACCTG GGGGACCTTAGCGCTCTCGTGTGAGTTGTGAACGCTTAAGGCTCGGCGCT CGAGTGGTTGGCGCTCCCTCATCGAGCACCGAATGCACGTACGATAACTC TTGGTTGCTTTGCGGGAATTTTGCACACACTACACGAGAGAGAGAAACAG TTTAGTTGAGCCCCCATTTAAGAGAGAGGGCCAGAGCGAGGAGCATCGAA TGAATCGCACGACAAGGCCAAATTGCGCGGCCCATATGTACATTGAAATA AAATGCATACGATCGCGCCCAACCCAATGCGCTTGTCCTTGTTTGCTTTC ATCGCGATATCTGGCAGCCACGATGACGAGACCGGGATGTACATTCCGCA TGGCAAGGCATGGATAAAGGAGTTTCTCTTCAAGTTTTTCCAGCAGCAGG CGGCACAAAAGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig106088:127..690+

>mRNA_F-distichus_contig106088.518.1 ID=mRNA_F-distichus_contig106088.518.1|Name=mRNA_F-distichus_contig106088.518.1|organism=Fucus distichus monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at F-distichus_contig106088:127..690+ (Fucus distichus monoicous)
ATGTTTACTCTTCCGACTGAATGGTTTTCCGTACTTTCTTCAGGCGTGAC
GAAGATGTACGAGGCGCGTTTGAAGGAGAAAAACCCGAGCCAGGTGCACA
TCACGTACGACATCACTGATCTCTACCGCTTCATTGACGACCTGGGGGAC
CTTAGCGCTCTCGTATGTTTACTCTTCCGACTGAATGGTTTTCCGTACTT
TCTTCAGGCGTGACGAAGATGTACGAGGCGCGTTTGAAGGAGAAAAACCC
GAGCCAGGTGCACATCACGTACGACATCACTGATCTCTACCGCTTCATTG
ACGACCTGGGGGACCTTAGCGCTCTCGTCCACGATGACGAGACCGGGATG
TACATTCCGCATGGCAAGGCATGGATAAAGGAGTTTCTCTTCAAGTTTTT
CCAGCAGCAGGCGGCACAAAAGTAGCCACGATGACGAGACCGGGATGTAC
ATTCCGCATGGCAAGGCATGGATAAAGGAGTTTCTCTTCAAGTTTTTCCA
GCAGCAGGCGGCACAAAAGTAG
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