mRNA_F-distichus_contig105915.505.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105915.505.1
Unique NamemRNA_F-distichus_contig105915.505.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105915.505.1 vs. uniprot
Match: D7G6V1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6V1_ECTSI)

HSP 1 Score: 261 bits (668), Expect = 2.390e-85
Identity = 119/168 (70.83%), Postives = 143/168 (85.12%), Query Frame = 1 
Query:    1 DHVIIPTTSYNSMLFVEG*AKRFSRATFWRLKGTKLPGAKFTRDLTLESFPEEWRSELDLSIIEGNRIFRECFMLHRATKSVFAMDSLIEMGEDNIRHPVLRAGAKMTGNFERPMCPTKVLLQNREQCKAAKSRVLDWGFGIVYATHGTCPIFEAKEAIRDGFDFLWD 504
            DH+I+PTT++N++LFV G A+RF RATFW L+G KLPGAKFT+DLT+ESFPE W++ELD+SI+EGN IFRECF+LHR T+SVFAMDS +EMGE NI +PVLRA +KM+GNF RP+CPTK LL NRE+CK+A SRVLDW F  VYA HG CPI +AKEAIR  F FLWD
Sbjct:  133 DHIIVPTTAWNNLLFVAGWAERFPRATFWGLEGVKLPGAKFTKDLTMESFPESWKAELDVSILEGNGIFRECFLLHRTTRSVFAMDSFVEMGEGNIPNPVLRAASKMSGNFGRPVCPTKSLLWNREKCKSAMSRVLDWDFDKVYANHGECPIQDAKEAIRGEFQFLWD 300
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105915.505.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G6V1_ECTSI2.390e-8570.83Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105915contigF-distichus_contig105915:283..1448 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF4336
Ec32 orthologEc-01_012140.1
Exons3
Model size507
Cds size288
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105915.505.1prot_F-distichus_contig105915.505.1Fucus distichus monoicouspolypeptideF-distichus_contig105915 881..1448 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.6267128-UTR-F-distichus_contig105915:282..4261622928985.6267128-UTR-F-distichus_contig105915:282..426Fucus distichus monoicousUTRF-distichus_contig105915 283..426 +
1690885092.367343-UTR-F-distichus_contig105915:282..4261690885092.367343-UTR-F-distichus_contig105915:282..426Fucus distichus monoicousUTRF-distichus_contig105915 283..426 +
1622928985.6411924-UTR-F-distichus_contig105915:805..8801622928985.6411924-UTR-F-distichus_contig105915:805..880Fucus distichus monoicousUTRF-distichus_contig105915 806..880 +
1690885092.3808725-UTR-F-distichus_contig105915:805..8801690885092.3808725-UTR-F-distichus_contig105915:805..880Fucus distichus monoicousUTRF-distichus_contig105915 806..880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.6548805-CDS-F-distichus_contig105915:880..10001622928985.6548805-CDS-F-distichus_contig105915:880..1000Fucus distichus monoicousCDSF-distichus_contig105915 881..1000 +
1690885092.3908234-CDS-F-distichus_contig105915:880..10001690885092.3908234-CDS-F-distichus_contig105915:880..1000Fucus distichus monoicousCDSF-distichus_contig105915 881..1000 +
1622928985.6719158-CDS-F-distichus_contig105915:1280..14481622928985.6719158-CDS-F-distichus_contig105915:1280..1448Fucus distichus monoicousCDSF-distichus_contig105915 1281..1448 +
1690885092.400206-CDS-F-distichus_contig105915:1280..14481690885092.400206-CDS-F-distichus_contig105915:1280..1448Fucus distichus monoicousCDSF-distichus_contig105915 1281..1448 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105915.505.1

>prot_F-distichus_contig105915.505.1 ID=prot_F-distichus_contig105915.505.1|Name=mRNA_F-distichus_contig105915.505.1|organism=Fucus distichus monoicous|type=polypeptide|length=96bp
MLHRATKSVFAMDSLIEMGEDNIRHPVLRAGAKMTGNFERPMCPTKVLLQ
NREQCKAAKSRVLDWGFGIVYATHGTCPIFEAKEAIRDGFDFLWD*
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mRNA from alignment at F-distichus_contig105915:283..1448+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105915.505.1 ID=mRNA_F-distichus_contig105915.505.1|Name=mRNA_F-distichus_contig105915.505.1|organism=Fucus distichus monoicous|type=mRNA|length=1166bp|location=Sequence derived from alignment at F-distichus_contig105915:283..1448+ (Fucus distichus monoicous)
GACCATGTGATCATCCCGACGACGTCTTACAACAGCATGCTTTTTGTGGA
AGGATGAGCGAAGCGCTTTTCAAGAGCAACCTTCTGGAGACTGAAAGGAA
CGAAATTACCTGGAGCGAAATTCACGAGAGATTTAACATTAGAGGTGGGG
AAGGGTCTCGCCTAAAACGAGAACTGTTTTGGCCGCTGCCGTCGCCTGAA
ACTCCAACCTGACCGCTCGGCATTGGGCGAGGATGATCTGGATGTAACGA
TCCAACTATACTTACTTGTGCATTTGTATCATGTTTCCGTGTGCGCCCAC
GGAGTTCCGAAGAGTTGGCCCGCAGAGAGTTTGTCAGTCAAGGACGTCCA
GCTCGTTTGCACTATTGACAGCAGTGTAGAGGACACGTTTTACCGCAAAA
ACCTTTGAAGGTAACTCGTCCATTGCCTTCTCCTACCACAGCGACCGGTG
CATCCCGAGTAGCTGTAGCCGCGTCTGACCACACCCGATCCACAAATCTT
ACCAAAGGCCGTTGGTCCACCAGTCTTTCCCCGAGGAATGGCGCTCGGAG
CTGGATCTGTCCATAATCGAAGGAAATCGTATCTTCCGAGAGTGCTTCAT
GCTACACCGCGCCACCAAGAGCGTCTTCGCTATGGATAGCTTGATTGAGA
TGGGCGAGGATAATATTCGTCACCCTGTACTGCGGGCAGGGGCTAAAATG
ACGGGAAACTTCGAACGGGTAAGTTAGGGCTTCGCCTGTATGATTATCAA
GCCATCGTTGAAACTCACTCGTTCCCATCTGTAGTCAGTCTCCTCAGGAG
GGAGATGGGCCAGCCATTTGTTTCCGCGATATTCTTTATAAGCTGCTGCG
GACTTTGTTCTACCCGAACAGCCGTTTAACCAGGTCGACGAAATGGTGTG
GGGTGGTTACTACAAGCTTGGCGAACTCCTGGCGTGAGAACATATCCCAC
TCATGTGCCCTTTGCCCGTCCTTTACACGTTGCAACCCCCGCCGCTAGCC
GATGTGTCCGACCAAGGTGCTCCTGCAGAATCGCGAGCAGTGCAAGGCCG
CTAAATCGAGGGTCCTAGACTGGGGCTTCGGCATTGTGTACGCTACGCAC
GGGACGTGCCCGATTTTTGAAGCAAAGGAAGCTATTCGAGACGGGTTCGA
TTTTTTGTGGGATTAA
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Coding sequence (CDS) from alignment at F-distichus_contig105915:283..1448+

>mRNA_F-distichus_contig105915.505.1 ID=mRNA_F-distichus_contig105915.505.1|Name=mRNA_F-distichus_contig105915.505.1|organism=Fucus distichus monoicous|type=CDS|length=576bp|location=Sequence derived from alignment at F-distichus_contig105915:283..1448+ (Fucus distichus monoicous)
ATGCTACACCGCGCCACCAAGAGCGTCTTCGCTATGGATAGCTTGATTGA
GATGGGCGAGGATAATATTCGTCACCCTGTACTGCGGGCAGGGGCTAAAA
TGACGGGAAACTTCGAACGGATGCTACACCGCGCCACCAAGAGCGTCTTC
GCTATGGATAGCTTGATTGAGATGGGCGAGGATAATATTCGTCACCCTGT
ACTGCGGGCAGGGGCTAAAATGACGGGAAACTTCGAACGGCCGATGTGTC
CGACCAAGGTGCTCCTGCAGAATCGCGAGCAGTGCAAGGCCGCTAAATCG
AGGGTCCTAGACTGGGGCTTCGGCATTGTGTACGCTACGCACGGGACGTG
CCCGATTTTTGAAGCAAAGGAAGCTATTCGAGACGGGTTCGATTTTTTGT
GGGATTAACCGATGTGTCCGACCAAGGTGCTCCTGCAGAATCGCGAGCAG
TGCAAGGCCGCTAAATCGAGGGTCCTAGACTGGGGCTTCGGCATTGTGTA
CGCTACGCACGGGACGTGCCCGATTTTTGAAGCAAAGGAAGCTATTCGAG
ACGGGTTCGATTTTTTGTGGGATTAA
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