mRNA_F-distichus_contig105908.504.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105908.504.1
Unique NamemRNA_F-distichus_contig105908.504.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: D8LM73_ECTSI (MCM domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM73_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 1.430e-59
Identity = 97/110 (88.18%), Postives = 105/110 (95.45%), Query Frame = 1 
Query:    1 ELLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQVSEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            ELLRRW PVFEGVRCDVQVTL+ANSV VQSG DQG+SQVSEE+RQEFV+LW+ N HRPLAVRNH++ASVCPQ+FGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV
Sbjct:  249 ELLRRWMPVFEGVRCDVQVTLRANSVTVQSGADQGSSQVSEELRQEFVELWEANTHRPLAVRNHVIASVCPQVFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 358
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: A0A6H5JSZ1_9PHAE (MCM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ1_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 2.080e-39
Identity = 65/72 (90.28%), Postives = 71/72 (98.61%), Query Frame = 1 
Query:  115 VSEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            VSEE+RQEFV+LW+ NAHRPLAVRNH++ASVCPQ+FGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV
Sbjct:  172 VSEELRQEFVELWEANAHRPLAVRNHVIASVCPQVFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 243
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: H3GDF8_PHYRM (MCM domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GDF8_PHYRM)

HSP 1 Score: 120 bits (301), Expect = 2.080e-29
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    4 LLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQV--SEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            L+R WKP   GVRCD++ T+KANS+ +++     TSQV  +EE+R EF   W  +   P+  RN IVAS+CP+++GLF VKLA+ LT+IGGV+  D  GM+ RG PH+L++
Sbjct:  607 LMRTWKPCVRGVRCDLETTIKANSIRIKNA---STSQVLVTEELRAEFAQFWAKHKRNPMRARNEIVASICPKVYGLFIVKLAVALTVIGGVSYVDETGMKTRGEPHMLLI 714
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: UPI00077A6424 (DNA helicase MCM9-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077A6424)

HSP 1 Score: 120 bits (300), Expect = 2.800e-29
Identity = 55/109 (50.46%), Postives = 76/109 (69.72%), Query Frame = 1 
Query:    4 LLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQVSEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            ++RRWKPV+   RCD+++ LKAN V V +G   G   V+EE+++EF + W+ +   PL  RNHI+AS CPQ++GL+ VKLA+ L +IGGV   DP G R RG  HLL+V
Sbjct:  248 VMRRWKPVYADSRCDLELVLKANHVSVNNGQRAGVV-VTEELKREFAEFWEKHKDSPLQARNHILASFCPQVYGLYVVKLAVALVIIGGVQRIDPSGTRVRGESHLLLV 355
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: D0N2F2_PHYIT (DNA replication licensing factor MCM9 n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0N2F2_PHYIT)

HSP 1 Score: 119 bits (297), Expect = 7.140e-29
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    4 LLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQV--SEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            L+R WKP   GVRCD++ T+KANS+ +++     TSQV  +EE+R EF   W  +   P+  RN IVAS+CP+++GLF VKLA+ LT+IGGV+  D  GM+ RG PH+L++
Sbjct:  409 LMRTWKPCVRGVRCDLETTIKANSIRIKNAT---TSQVLVTEELRAEFAQFWSKHKRHPVRGRNEIVASICPKVYGLFIVKLAVALTVIGGVSYVDETGMKTRGEPHMLLI 516
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: A0A218UEY1_9PASE (DNA helicase MCM9 n=2 Tax=Passeriformes TaxID=9126 RepID=A0A218UEY1_9PASE)

HSP 1 Score: 116 bits (291), Expect = 1.240e-28
Identity = 56/109 (51.38%), Postives = 75/109 (68.81%), Query Frame = 1 
Query:    4 LLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQVSEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            +++RWKP  EG RCD+++ LKAN V V +    G   + EE+R+EF D WK + + PLA RN I+AS+CPQ+FGL+ VKLA+ + L GGV  TD  G R RG  HLL+V
Sbjct:  256 VMQRWKPFHEGARCDLELVLKANYVKVNNEQLAGVV-IDEEVRKEFEDFWKRHKNDPLAGRNEILASLCPQVFGLYLVKLAVAMVLAGGVQRTDAAGTRTRGESHLLLV 363
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: A0A2P4Y5F4_9STRA (DNA replication licensing factor MCM9 n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y5F4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.310e-28
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    4 LLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQV--SEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            L+R WKP   GVRCD++ T+KANS+ +++     TSQV  +EE+R EF   W  +   P+  RN IVAS+CP+++GLF VKLA+ LT+IGGV+  D  GM+ RG PH+L++
Sbjct:  482 LMRTWKPCVRGVRCDLETTIKANSIRIKNA---STSQVFVTEELRAEFTQFWAKHKRDPVRGRNEIVASICPKVYGLFIVKLAVALTVIGGVSYVDDTGMKTRGEPHMLLI 589
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: G4YSN4_PHYSP (MCM domain-containing protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4YSN4_PHYSP)

HSP 1 Score: 118 bits (295), Expect = 1.320e-28
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    4 LLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQV--SEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            L+R WKP   GVRCD++ T+KANS+ +++     TSQV  +EE+R EF   W  +   P+  RN IVAS+CP+++GLF VKLA+ LT+IGGV+  D  GM+ RG PH+L++
Sbjct:  287 LMRTWKPCVRGVRCDLETTIKANSIRIKNAT---TSQVLVTEELRAEFAQFWAKHKRDPIRGRNEIVASICPKVYGLFIVKLAVALTVIGGVSYVDETGMKTRGEPHMLLI 394
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: A0A225WGV4_9STRA (DNA replication licensing factor (Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WGV4_9STRA)

HSP 1 Score: 118 bits (295), Expect = 1.340e-28
Identity = 55/111 (49.55%), Postives = 78/111 (70.27%), Query Frame = 1 
Query:    4 LLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQV--SEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            L+R WKP   GVRCD++ T+KANS+ +++     TSQV  +EE+R EF   W  +   P+  RN IVAS+CP+++GLF VKLA+ LT+IGGV+  D  GM+ RG PH+L++
Sbjct:  582 LMRTWKPCVRGVRCDLETTIKANSIRIKNAT---TSQVLVTEELRAEFAQFWARHKRDPVRGRNEIVASICPKVYGLFIVKLAVALTVIGGVSHVDEAGMKTRGEPHMLLI 689
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BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Match: UPI000529B013 (DNA helicase MCM9-like n=1 Tax=Colius striatus TaxID=57412 RepID=UPI000529B013)

HSP 1 Score: 111 bits (278), Expect = 1.850e-28
Identity = 54/109 (49.54%), Postives = 74/109 (67.89%), Query Frame = 1 
Query:    4 LLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQVSEEIRQEFVDLWKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMRRRGTPHLLVV 330
            +++RWKP  E  RCD+++ LKAN V V +    G   + EE+R+EF D W+ + + PLA RN I+AS+CPQ+FGL+ VKLA+ + L GGV  TD  G R RG  HLL+V
Sbjct:   37 VMQRWKPFREDARCDLELVLKANYVKVNNEQLAGVV-IDEEVRKEFEDFWEKHRNDPLAGRNEILASLCPQVFGLYVVKLAVAMVLAGGVQRTDATGTRIRGESHLLLV 144
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105908.504.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LM73_ECTSI1.430e-5988.18MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JSZ1_9PHAE2.080e-3990.28MCM domain-containing protein n=1 Tax=Ectocarpus s... [more]
H3GDF8_PHYRM2.080e-2949.55MCM domain-containing protein n=1 Tax=Phytophthora... [more]
UPI00077A64242.800e-2950.46DNA helicase MCM9-like n=2 Tax=Acropora TaxID=6127... [more]
D0N2F2_PHYIT7.140e-2949.55DNA replication licensing factor MCM9 n=2 Tax=Phyt... [more]
A0A218UEY1_9PASE1.240e-2851.38DNA helicase MCM9 n=2 Tax=Passeriformes TaxID=9126... [more]
A0A2P4Y5F4_9STRA1.310e-2849.55DNA replication licensing factor MCM9 n=1 Tax=Phyt... [more]
G4YSN4_PHYSP1.320e-2849.55MCM domain-containing protein n=7 Tax=Phytophthora... [more]
A0A225WGV4_9STRA1.340e-2849.55DNA replication licensing factor (Fragment) n=1 Ta... [more]
UPI000529B0131.850e-2849.54DNA helicase MCM9-like n=1 Tax=Colius striatus Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105908contigF-distichus_contig105908:637..1867 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score206.5
Seed ortholog evalue6.6e-51
Seed eggNOG ortholog2880.D8LM73
Preferred nameMCM9
KEGG koko:K10738
Hectar predicted targeting categoryother localisation
GOsGO:0000724,GO:0000725,GO:0005575,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009987,GO:0032991,GO:0033554,GO:0034641,GO:0042555,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097362,GO:1901360
EggNOG free text desc.DNA replication initiation
EggNOG OGsCOG1241@1,KOG0477@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03032
Exons3
Model size332
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105908.504.1prot_F-distichus_contig105908.504.1Fucus distichus monoicouspolypeptideF-distichus_contig105908 639..1867 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928985.1413429-CDS-F-distichus_contig105908:638..7281622928985.1413429-CDS-F-distichus_contig105908:638..728Fucus distichus monoicousCDSF-distichus_contig105908 639..728 -
1690885092.329411-CDS-F-distichus_contig105908:638..7281690885092.329411-CDS-F-distichus_contig105908:638..728Fucus distichus monoicousCDSF-distichus_contig105908 639..728 -
1622928985.160511-CDS-F-distichus_contig105908:1313..14391622928985.160511-CDS-F-distichus_contig105908:1313..1439Fucus distichus monoicousCDSF-distichus_contig105908 1314..1439 -
1690885092.3435771-CDS-F-distichus_contig105908:1313..14391690885092.3435771-CDS-F-distichus_contig105908:1313..1439Fucus distichus monoicousCDSF-distichus_contig105908 1314..1439 -
1622928985.4493997-CDS-F-distichus_contig105908:1753..18671622928985.4493997-CDS-F-distichus_contig105908:1753..1867Fucus distichus monoicousCDSF-distichus_contig105908 1754..1867 -
1690885092.3563142-CDS-F-distichus_contig105908:1753..18671690885092.3563142-CDS-F-distichus_contig105908:1753..1867Fucus distichus monoicousCDSF-distichus_contig105908 1754..1867 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105908.504.1

>prot_F-distichus_contig105908.504.1 ID=prot_F-distichus_contig105908.504.1|Name=mRNA_F-distichus_contig105908.504.1|organism=Fucus distichus monoicous|type=polypeptide|length=110bp
ELLRRWKPVFEGVRCDVQVTLKANSVIVQSGLDQGTSQVSEEIRQEFVDL
WKVNAHRPLAVRNHIVASVCPQIFGLFTVKLAILLTLIGGVTETDPRGMR
RRGTPHLLVV
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mRNA from alignment at F-distichus_contig105908:637..1867-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105908.504.1 ID=mRNA_F-distichus_contig105908.504.1|Name=mRNA_F-distichus_contig105908.504.1|organism=Fucus distichus monoicous|type=mRNA|length=1231bp|location=Sequence derived from alignment at F-distichus_contig105908:637..1867- (Fucus distichus monoicous)
GAGCTGTTGCGGAGGTGGAAGCCCGTCTTCGAGGGCGTGAGATGCGATGT
GCAGGTCACACTAAAGGCGAACAGTGTCATCGTCCAGAGTGGCTTGGATC
AGGGCACTTCCCAGGCAAGAACACGCATCATTTCCTAGGCGCGTGGCTGT
GCTTTATCCTATAGCCTGACATGGACAGGCGAGAGGCTGAGGGGGGGGGG
GCGTCGTACATGGCGCGGGATTAAGAGCGGATGCGCTAGCGCAGTCTTCT
TTTCCGAAGGACATAAATATTACTCAGCATGCGCGAAGATTCTTCGCCTC
CTTGTCTCAAACTCACGGGCGTCTGGAAACTCTCGGTGAAATGTTCCCCC
CCACACGCCCGCCCGTTTCGATTGAGATCAAAAAACTTTCCCCAACCGAA
TGTTCCCGAACCTTACCGTCTTTGGCAGGTCAGCGAGGAAATTCGCCAGG
AGTTCGTGGACCTCTGGAAGGTGAACGCTCATCGCCCCCTCGCCGTCCGC
AATCATATCGTCGCCAGCGTCTGCCCGCAGATCTTCGGGCTCTTCACGGT
AAAGGTAAGGCGACACAGCCGGCAAATAATTTTCTTTCCCACAAACATTT
TGCCTCGTTTTTTTTTTGTCTTTTTTTTTGTGTGCGTCTTTATAAATGGA
GCTCTTCAGTATTTGTGTTGTTGTTGTTTTTGCCTCCTCTTCCTCTCCCT
CTTTCTTGCCCTTCGACGCGTCCGGTTTTCGAGGTCTCGCGTGCTCAAAA
AAGATAAGAAGAAAATGAAGAAGGAATGTCGCGTCCACAACGACGATCCC
AGAGGCATTCTTCTGTCTTCGCACAAAGCGTTCCCGCAATAGAAGCCCTT
CATAATATCGCACCAGTCCAACCAATATGTTGAGCTACTGTAGATGATGA
CGTTCAAGTGCGGAACTTTTATTTCAAGTCCCCCCCCCCCCTCCCCTCCC
CCGCCTCTATTAAGCCTACACCTATGTATTCTCTTCCGTGTCCGGTCTAT
TTTATTCATTTCAAAACTCTATACAAAACTTATACCCGAGTACTGTAAAA
AAAATCACGGACAATTCACGTACTATCGCTAATCATCCCCACGTAAATCA
CGCCGTCCCCCCCCCCCCCCAAACAAAAAACGCCTCCAGCTGGCCATCCT
CTTAACCTTGATCGGAGGAGTCACCGAGACAGATCCCAGGGGCATGCGAC
GCAGGGGCACACCTCACCTCTTGGTGGTAGG
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Coding sequence (CDS) from alignment at F-distichus_contig105908:637..1867-

>mRNA_F-distichus_contig105908.504.1 ID=mRNA_F-distichus_contig105908.504.1|Name=mRNA_F-distichus_contig105908.504.1|organism=Fucus distichus monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at F-distichus_contig105908:637..1867- (Fucus distichus monoicous)
GAGCTGTTGCGGAGGTGGAAGCCCGTCTTCGAGGGCGTGAGATGCGATGT
GCAGGTCACACTAAAGGCGAACAGTGTCATCGTCCAGAGTGGCTTGGATC
AGGGCACTTCCCAGGAGCTGTTGCGGAGGTGGAAGCCCGTCTTCGAGGGC
GTGAGATGCGATGTGCAGGTCACACTAAAGGCGAACAGTGTCATCGTCCA
GAGTGGCTTGGATCAGGGCACTTCCCAGGTCAGCGAGGAAATTCGCCAGG
AGTTCGTGGACCTCTGGAAGGTGAACGCTCATCGCCCCCTCGCCGTCCGC
AATCATATCGTCGCCAGCGTCTGCCCGCAGATCTTCGGGCTCTTCACGGT
AAAGGTCAGCGAGGAAATTCGCCAGGAGTTCGTGGACCTCTGGAAGGTGA
ACGCTCATCGCCCCCTCGCCGTCCGCAATCATATCGTCGCCAGCGTCTGC
CCGCAGATCTTCGGGCTCTTCACGGTAAAGCTGGCCATCCTCTTAACCTT
GATCGGAGGAGTCACCGAGACAGATCCCAGGGGCATGCGACGCAGGGGCA
CACCTCACCTCTTGGTGGTACTGGCCATCCTCTTAACCTTGATCGGAGGA
GTCACCGAGACAGATCCCAGGGGCATGCGACGCAGGGGCACACCTCACCT
CTTGGTGGTA
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