mRNA_F-distichus_contig105865.500.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105865.500.1
Unique NamemRNA_F-distichus_contig105865.500.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105865.500.1 vs. uniprot
Match: A0A6H5JNH0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNH0_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 1.050e-23
Identity = 67/129 (51.94%), Postives = 78/129 (60.47%), Query Frame = 1 
Query:  616 LPSWPLMNA-----SRPLLCGSVPADLPGEGSVGGDWEEVDENY------------EGDEKEEDDDLGEAGREAWGEDTMVSGDPATIARAFGHAVDFVVDAGVLEVGGFSTIVDAVGAEPVVLREGIG 951
            LP+ P++ A       PLLCGSVP+ +PG+G    DW E                 EG+            R AWG+D  VSGDPA I  A+GHAVDFVVDAG LEVGGFST+VDAVGAEPVVLREG+G
Sbjct:   21 LPNAPVLLALLQQLDGPLLCGSVPSGVPGDG----DWGEXXXXXXXXXXXXXXXXVEGE---------RVSRGAWGDDAAVSGDPAAIEAAWGHAVDFVVDAGPLEVGGFSTVVDAVGAEPVVLREGLG 136
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BLAST of mRNA_F-distichus_contig105865.500.1 vs. uniprot
Match: D8LIB5_ECTSI (Threonylcarbamoyl-AMP synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIB5_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 2.690e-11
Identity = 33/41 (80.49%), Postives = 38/41 (92.68%), Query Frame = 1 
Query:    4 VPRMLQEYKHHKKTWKRKEIGVRLPDAPVLLDLLEKLDRQG 126
            VPRML E+KHHKKTWKRKEIG+RLP+APVLLDLL++LD  G
Sbjct:  121 VPRMLIEHKHHKKTWKRKEIGIRLPNAPVLLDLLQQLDGCG 161
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BLAST of mRNA_F-distichus_contig105865.500.1 vs. uniprot
Match: A0A835YZP2_9STRA (Threonylcarbamoyl-AMP synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZP2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 2.220e-6
Identity = 27/47 (57.45%), Postives = 36/47 (76.60%), Query Frame = 1 
Query:    4 VPRMLQEYKHHKKTWKRKEIGVRLPDAPVLLDLLEKLDRQGF*TSLP 144
            VPRML ++K HKKTWKR+E+GVR+PD PVL  +LE L+     +S+P
Sbjct:  178 VPRMLLDHKSHKKTWKRREVGVRIPDQPVLHAVLEALENPLICSSVP 224
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BLAST of mRNA_F-distichus_contig105865.500.1 vs. uniprot
Match: A0A7S2TTY3_9EUKA (Threonylcarbamoyl-AMP synthase n=2 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TTY3_9EUKA)

HSP 1 Score: 55.5 bits (132), Expect = 1.920e-5
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:    4 VPRMLQEYKHHKKTWKRKEIGVRLPDAPVLLDLLEKLDRQGF*TSLPI 147
            +PRM+ E+K HKK WKRKEIGVR+PD PV  + L+ +      +S+PI
Sbjct:  130 LPRMILEHKEHKKVWKRKEIGVRVPDDPVCQEFLKLIGNPVLCSSVPI 177
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105865.500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JNH0_9PHAE1.050e-2351.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIB5_ECTSI2.690e-1180.49Threonylcarbamoyl-AMP synthase n=1 Tax=Ectocarpus ... [more]
A0A835YZP2_9STRA2.220e-657.45Threonylcarbamoyl-AMP synthase n=1 Tax=Tribonema m... [more]
A0A7S2TTY3_9EUKA1.920e-552.08Threonylcarbamoyl-AMP synthase n=2 Tax=Lotharella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105865contigF-distichus_contig105865:4..1326 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptiontranslation factor
Ec32 orthologEc-24_001520.1
Exons2
Model size951
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105865.500.1prot_F-distichus_contig105865.500.1Fucus distichus monoicouspolypeptideF-distichus_contig105865 4..693 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.6476173-CDS-F-distichus_contig105865:3..721622928984.6476173-CDS-F-distichus_contig105865:3..72Fucus distichus monoicousCDSF-distichus_contig105865 4..72 -
1690885092.0741038-CDS-F-distichus_contig105865:3..721690885092.0741038-CDS-F-distichus_contig105865:3..72Fucus distichus monoicousCDSF-distichus_contig105865 4..72 -
1622928984.6760755-CDS-F-distichus_contig105865:444..6931622928984.6760755-CDS-F-distichus_contig105865:444..693Fucus distichus monoicousCDSF-distichus_contig105865 445..693 -
1690885092.1367927-CDS-F-distichus_contig105865:444..6931690885092.1367927-CDS-F-distichus_contig105865:444..693Fucus distichus monoicousCDSF-distichus_contig105865 445..693 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.6932592-UTR-F-distichus_contig105865:693..13261622928984.6932592-UTR-F-distichus_contig105865:693..1326Fucus distichus monoicousUTRF-distichus_contig105865 694..1326 -
1690885092.1460345-UTR-F-distichus_contig105865:693..13261690885092.1460345-UTR-F-distichus_contig105865:693..1326Fucus distichus monoicousUTRF-distichus_contig105865 694..1326 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105865.500.1

>prot_F-distichus_contig105865.500.1 ID=prot_F-distichus_contig105865.500.1|Name=mRNA_F-distichus_contig105865.500.1|organism=Fucus distichus monoicous|type=polypeptide|length=106bp
MNASRPLLCGSVPADLPGEGSVGGDWEEVDENYEGDEKEEDDDLGEAGRE
AWGEDTMVSGDPATIARAFGHAVDFVVDAGVLEVGGFSTIVDAVGAEPVV
LREGIG
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mRNA from alignment at F-distichus_contig105865:4..1326-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105865.500.1 ID=mRNA_F-distichus_contig105865.500.1|Name=mRNA_F-distichus_contig105865.500.1|organism=Fucus distichus monoicous|type=mRNA|length=1323bp|location=Sequence derived from alignment at F-distichus_contig105865:4..1326- (Fucus distichus monoicous)
CAGGTACCACGAATGCTGCAGGAGTACAAGCACCACAAGAAGACATGGAA
GCGCAAAGAGATTGGCGTCCGCCTGCCGGACGCCCCTGTTCTTCTTGATC
TCCTGGAGAAGCTCGACAGGCAAGGTTTTTAGACCAGCCTCCCGATCCAC
CGACATTGGAGTATCGGACATTTTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGATGTTGTTGTTGTTGTAAAAGAGTAGCTATATCGGCAGTAG
CTCTATCGGGCGTGTCCTTGTGTCACGACCCCCAAAAGTCCGTAAAAAAC
CTCTGTCCCCCTTTTCATTCACCCGGAACGCTACCGCCACGCTTCTGGAA
GCCCTGCTGCCCAGTCGTATCGGAAGCATAGACATCCGAGACGCTTGCGC
GGTGTTCATTTCGCGGCACGAAATAACCCGAAGGACAGCGATATATATAT
ATATGTGTGTATGCATATATTCGTGTTCCGTTCCAGATGCTCTTACGTCA
GTACCTATCACTCGAACGACTTCTCACTGAGTGGAGCGACCACCGCGTGC
GAAGTTAGGAGGTTTCTTTCCGGGTTGCGTCTGCGCCCTGTGACATTCTT
TCCGGGTGACTTTTTTTACCCTCCTGGCCCCTAATGAACGCGTCAAGGCC
GCTACTCTGCGGTAGCGTGCCGGCTGATCTGCCCGGCGAAGGCTCCGTGG
GGGGAGACTGGGAGGAGGTTGACGAGAATTACGAGGGTGACGAGAAAGAA
GAGGACGACGACCTTGGAGAAGCGGGCAGAGAAGCCTGGGGGGAGGACAC
AATGGTGTCTGGTGATCCCGCCACCATCGCGCGCGCCTTCGGACACGCGG
TTGATTTTGTCGTGGATGCCGGCGTCCTAGAGGTGAGACGCGGCCGGACC
CTTTTGAGGTTTCGCACCCGTATTCCACACCCTTCCGTCCTGTCCCCGTC
TTGCGCGACCAATGCTTGCTGTTGCTTGCGCGCCGAAGCCTTGCGCGCAG
TAACTCGAGAAAACGGCCCGCCGAAACCTCTATCAGGGTTTTCTACTGTT
TTCGTATTGCATGGATGGCATTCGTCCCTCGTCTCTATGTTTGCTAATGG
GAAAATCTCGCTGTGAATAAAATGGTAGCCGCCCGATCAGACGCCCCATG
TGGTGCTCCTTCCTCGTAGAAATTTCGCTGAATGGCCGGGGGAAACCCAT
GTCCTGCGCCCCTTACGCCCCCTACCCCGCCCCCCCCGCTTGACGTGGCT
GCAGGTCGGCGGGTTCAGCACCATCGTGGATGCGGTTGGAGCAGAACCAG
TTGTTTTGCGGGAAGGCATTGGA
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Coding sequence (CDS) from alignment at F-distichus_contig105865:4..1326-

>mRNA_F-distichus_contig105865.500.1 ID=mRNA_F-distichus_contig105865.500.1|Name=mRNA_F-distichus_contig105865.500.1|organism=Fucus distichus monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at F-distichus_contig105865:4..1326- (Fucus distichus monoicous)
ATGAACGCGTCAAGGCCGCTACTCTGCGGTAGCGTGCCGGCTGATCTGCC
CGGCGAAGGCTCCGTGGGGGGAGACTGGGAGGAGGTTGACGAGAATTACG
AGGGTGACGAGAAAGAAGAGGACGACGACCTTGGAGAAGCGGGCAGAGAA
GCCTGGGGGGAGGACACAATGGTGTCTGGTGATCCCGCCACCATCGCGCG
CGCCTTCGGACACGCGGTTGATTTTGTCGTGGATGCCGGCGTCCTAGAGA
TGAACGCGTCAAGGCCGCTACTCTGCGGTAGCGTGCCGGCTGATCTGCCC
GGCGAAGGCTCCGTGGGGGGAGACTGGGAGGAGGTTGACGAGAATTACGA
GGGTGACGAGAAAGAAGAGGACGACGACCTTGGAGAAGCGGGCAGAGAAG
CCTGGGGGGAGGACACAATGGTGTCTGGTGATCCCGCCACCATCGCGCGC
GCCTTCGGACACGCGGTTGATTTTGTCGTGGATGCCGGCGTCCTAGAGGT
CGGCGGGTTCAGCACCATCGTGGATGCGGTTGGAGCAGAACCAGTTGTTT
TGCGGGAAGGCATTGGAGTCGGCGGGTTCAGCACCATCGTGGATGCGGTT
GGAGCAGAACCAGTTGTTTTGCGGGAAGGCATTGGA
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