mRNA_F-distichus_contig105838.496.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105838.496.1
Unique NamemRNA_F-distichus_contig105838.496.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: UPI001F00414C (protein yippee-like 5 isoform X2 n=1 Tax=Vespa crabro TaxID=7445 RepID=UPI001F00414C)

HSP 1 Score: 128 bits (322), Expect = 2.620e-36
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG+IF EHIGGTRLFSCASCDT LTNRG+ ISTRFTGATGRAFLFNKVVNLNYSEV D VMLTGRHMV    C
Sbjct:    1 MGVIFLEHIGGTRLFSCASCDTNLTNRGQLISTRFTGATGRAFLFNKVVNLNYSEVQDRVMLTGRHMVRDVSC 73
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BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: A0A1D2N3S3_ORCCI (Protein yippee-like n=2 Tax=Entomobryomorpha TaxID=730330 RepID=A0A1D2N3S3_ORCCI)

HSP 1 Score: 129 bits (323), Expect = 4.520e-36
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG IF EHIGGTRLFSCASCDT+LTNRGE ISTRFTGATGRAFLF+KVVNLNYSEV D VMLTGRHMV    C
Sbjct:    1 MGRIFLEHIGGTRLFSCASCDTILTNRGELISTRFTGATGRAFLFSKVVNLNYSEVQDRVMLTGRHMVRDVSC 73
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BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: A0A7M7GQF3_APIME (Protein yippee-like n=5 Tax=Apinae TaxID=70987 RepID=A0A7M7GQF3_APIME)

HSP 1 Score: 128 bits (322), Expect = 5.860e-36
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG+IF EHIGGTRLFSCASCDT LTNRG+ ISTRFTGATGRAFLFNKVVNLNYSEV D VMLTGRHMV    C
Sbjct:    1 MGVIFLEHIGGTRLFSCASCDTNLTNRGQLISTRFTGATGRAFLFNKVVNLNYSEVQDRVMLTGRHMVRDVSC 73
[Close]
BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: A0A6P3DGF6_BOMTE (Protein yippee-like n=37 Tax=Hymenoptera TaxID=7399 RepID=A0A6P3DGF6_BOMTE)

HSP 1 Score: 128 bits (322), Expect = 7.450e-36
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG+IF EHIGGTRLFSCASCDT LTNRG+ ISTRFTGATGRAFLFNKVVNLNYSEV D VMLTGRHMV    C
Sbjct:    9 MGVIFLEHIGGTRLFSCASCDTNLTNRGQLISTRFTGATGRAFLFNKVVNLNYSEVQDRVMLTGRHMVRDVSC 81
[Close]
BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: UPI00083FE555 (protein yippee-like 5 isoform X1 n=4 Tax=Apocrita TaxID=7400 RepID=UPI00083FE555)

HSP 1 Score: 128 bits (322), Expect = 1.270e-35
Identity = 62/73 (84.93%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG+IF EHIGGTRLFSCASCDT LTNRG+ ISTRFTGATGRAFLFNKVVNLNYSEV D VMLTGRHMV    C
Sbjct:   26 MGVIFLEHIGGTRLFSCASCDTNLTNRGQLISTRFTGATGRAFLFNKVVNLNYSEVQDRVMLTGRHMVRDVSC 98
[Close]
BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: UPI001C9BB265 (protein yippee-like 5 isoform X3 n=2 Tax=Apoidea TaxID=34735 RepID=UPI001C9BB265)

HSP 1 Score: 127 bits (319), Expect = 2.950e-35
Identity = 61/73 (83.56%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG+IF EHIGGTRLFSCA+CDT LTNRG+ ISTRFTGATGRAFLFNKVVNLNYSEV D VMLTGRHMV    C
Sbjct:   12 MGVIFLEHIGGTRLFSCAACDTNLTNRGQLISTRFTGATGRAFLFNKVVNLNYSEVQDRVMLTGRHMVRDVSC 84
[Close]
BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: B7QER8_IXOSC (Protein yippee-like n=6 Tax=Ixodoidea TaxID=297308 RepID=B7QER8_IXOSC)

HSP 1 Score: 127 bits (318), Expect = 5.310e-35
Identity = 62/73 (84.93%), Postives = 62/73 (84.93%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG IF EHIGG RLFSCASCDTVLTNR E ISTRFTGATGRAFLFNKVVNLNYSEV D VMLTGRHMV    C
Sbjct:   26 MGRIFLEHIGGARLFSCASCDTVLTNRNELISTRFTGATGRAFLFNKVVNLNYSEVQDRVMLTGRHMVRDVSC 98
[Close]
BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: C3Z3Q0_BRAFL (Protein yippee-like n=3 Tax=Bilateria TaxID=33213 RepID=C3Z3Q0_BRAFL)

HSP 1 Score: 126 bits (316), Expect = 5.550e-35
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG IF +HIGGTRLFSCA+CDT+LTNR E ISTRFTGATGRAFLFNKVVNLNYSEV D VMLTGRHMV    C
Sbjct:    1 MGRIFLDHIGGTRLFSCATCDTILTNRSELISTRFTGATGRAFLFNKVVNLNYSEVQDRVMLTGRHMVRDVSC 73
[Close]
BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: L7M5Z7_RHIPC (Protein yippee-like n=3 Tax=Rhipicephalus TaxID=34630 RepID=L7M5Z7_RHIPC)

HSP 1 Score: 125 bits (315), Expect = 7.200e-35
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG IF +HIGG+RLFSCASCDT+LTNR E ISTRFTGATGRAFLFNKVVNLNYSEV D VMLTGRHMV    C
Sbjct:    1 MGRIFLDHIGGSRLFSCASCDTILTNRSELISTRFTGATGRAFLFNKVVNLNYSEVQDRVMLTGRHMVRDVSC 73
[Close]
BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Match: UPI001C9B8D8E (protein yippee-like 5 isoform X1 n=2 Tax=Colletes gigas TaxID=935657 RepID=UPI001C9B8D8E)

HSP 1 Score: 127 bits (319), Expect = 9.760e-35
Identity = 61/73 (83.56%), Postives = 64/73 (87.67%), Query Frame = 1 
Query:   49 MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVNLNYSEVMDGVMLTGRHMVTGQRC 267
            MG+IF EHIGGTRLFSCA+CDT LTNRG+ ISTRFTGATGRAFLFNKVVNLNYSEV D VMLTGRHMV    C
Sbjct:   53 MGVIFLEHIGGTRLFSCAACDTNLTNRGQLISTRFTGATGRAFLFNKVVNLNYSEVQDRVMLTGRHMVRDVSC 125
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105838.496.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI001F00414C2.620e-3684.93protein yippee-like 5 isoform X2 n=1 Tax=Vespa cra... [more]
A0A1D2N3S3_ORCCI4.520e-3684.93Protein yippee-like n=2 Tax=Entomobryomorpha TaxID... [more]
A0A7M7GQF3_APIME5.860e-3684.93Protein yippee-like n=5 Tax=Apinae TaxID=70987 Rep... [more]
A0A6P3DGF6_BOMTE7.450e-3684.93Protein yippee-like n=37 Tax=Hymenoptera TaxID=739... [more]
UPI00083FE5551.270e-3584.93protein yippee-like 5 isoform X1 n=4 Tax=Apocrita ... [more]
UPI001C9BB2652.950e-3583.56protein yippee-like 5 isoform X3 n=2 Tax=Apoidea T... [more]
B7QER8_IXOSC5.310e-3584.93Protein yippee-like n=6 Tax=Ixodoidea TaxID=297308... [more]
C3Z3Q0_BRAFL5.550e-3582.19Protein yippee-like n=3 Tax=Bilateria TaxID=33213 ... [more]
L7M5Z7_RHIPC7.200e-3582.19Protein yippee-like n=3 Tax=Rhipicephalus TaxID=34... [more]
UPI001C9B8D8E9.760e-3583.56protein yippee-like 5 isoform X1 n=2 Tax=Colletes ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105838contigF-distichus_contig105838:594..1050 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeArthropoda
Seed ortholog score130.6
Seed ortholog evalue3.3e-28
Seed eggNOG ortholog132113.XP_003488324.1
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0043167,GO:0043169,GO:0046872
EggNOG free text desc.Belongs to the yippee family
EggNOG OGs3A1JT@33154,3BPEE@33208,3D6HJ@33213,3SMF4@50557,41Z6P@6656,46IF0@7399,KOG3399@1,KOG3399@2759
COG Functional cat.S
Best tax levelHymenoptera
Best eggNOG OGNA|NA|NA
Exons2
Model size394
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105838.496.1prot_F-distichus_contig105838.496.1Fucus distichus monoicouspolypeptideF-distichus_contig105838 642..878 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.1336896-UTR-F-distichus_contig105838:593..6411622928984.1336896-UTR-F-distichus_contig105838:593..641Fucus distichus monoicousUTRF-distichus_contig105838 594..641 +
1690885091.6900167-UTR-F-distichus_contig105838:593..6411690885091.6900167-UTR-F-distichus_contig105838:593..641Fucus distichus monoicousUTRF-distichus_contig105838 594..641 +
1622928984.197346-UTR-F-distichus_contig105838:878..9261622928984.197346-UTR-F-distichus_contig105838:878..926Fucus distichus monoicousUTRF-distichus_contig105838 879..926 +
1690885091.7190924-UTR-F-distichus_contig105838:878..9261690885091.7190924-UTR-F-distichus_contig105838:878..926Fucus distichus monoicousUTRF-distichus_contig105838 879..926 +
1622928984.2224867-UTR-F-distichus_contig105838:989..10501622928984.2224867-UTR-F-distichus_contig105838:989..1050Fucus distichus monoicousUTRF-distichus_contig105838 990..1050 +
1690885091.7299442-UTR-F-distichus_contig105838:989..10501690885091.7299442-UTR-F-distichus_contig105838:989..1050Fucus distichus monoicousUTRF-distichus_contig105838 990..1050 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928984.1510124-CDS-F-distichus_contig105838:641..8781622928984.1510124-CDS-F-distichus_contig105838:641..878Fucus distichus monoicousCDSF-distichus_contig105838 642..878 +
1690885091.7049434-CDS-F-distichus_contig105838:641..8781690885091.7049434-CDS-F-distichus_contig105838:641..878Fucus distichus monoicousCDSF-distichus_contig105838 642..878 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105838.496.1

>prot_F-distichus_contig105838.496.1 ID=prot_F-distichus_contig105838.496.1|Name=mRNA_F-distichus_contig105838.496.1|organism=Fucus distichus monoicous|type=polypeptide|length=79bp
MGLIFKEHIGGTRLFSCASCDTVLTNRGEFISTRFTGATGRAFLFNKVVN
LNYSEVMDGVMLTGRHMVTGQRCLLQEL*
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mRNA from alignment at F-distichus_contig105838:594..1050+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105838.496.1 ID=mRNA_F-distichus_contig105838.496.1|Name=mRNA_F-distichus_contig105838.496.1|organism=Fucus distichus monoicous|type=mRNA|length=457bp|location=Sequence derived from alignment at F-distichus_contig105838:594..1050+ (Fucus distichus monoicous)
ACTCAAGAGGAGGAGCTCATTCACACAAATTTTAAATCTCCTGAAAATAT
GGGTCTTATCTTCAAAGAGCATATTGGGGGCACCAGGCTCTTCTCCTGCG
CCTCCTGCGACACTGTCCTGACCAACAGGGGGGAGTTCATCTCCACCAGG
TTCACAGGAGCAACTGGTAGAGCCTTCCTGTTCAACAAGGTGGTCAACTT
GAACTACAGCGAGGTGATGGACGGGGTGATGCTGACTGGGCGCCACATGG
TCACTGGTCAGAGATGTCTTCTGCAAGAACTCTGATGCAAAGCTGGGCTG
GGTGTATGAGTTTGCAACAGAGGATAACCAGAGGTGAGTGATCATCGTGC
TGGGCATGATGGTGATCATGGTGATGTTCAGGTAAAATGAGGGCAGGGTC
ATCCTGGAGAGGGCACTGGTTCAGGAGTGTGATGGCATTGAAGAACACCC
TGACAGC
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Coding sequence (CDS) from alignment at F-distichus_contig105838:594..1050+

>mRNA_F-distichus_contig105838.496.1 ID=mRNA_F-distichus_contig105838.496.1|Name=mRNA_F-distichus_contig105838.496.1|organism=Fucus distichus monoicous|type=CDS|length=474bp|location=Sequence derived from alignment at F-distichus_contig105838:594..1050+ (Fucus distichus monoicous)
ATGGGTCTTATCTTCAAAGAGCATATTGGGGGCACCAGGCTCTTCTCCTG
CGCCTCCTGCGACACTGTCCTGACCAACAGGGGGGAGTTCATCTCCACCA
GGTTCACAGGAGCAACTGGTAGAGCCTTCCTGTTCAACAAGGTGGTCAAC
TTGAACTACAGCGAGGTGATGGACGGGGTGATGCTGACTGGGCGCCACAT
GGTCACTGGTCAGAGATGTCTTCTGCAAGAACTCTGAATGGGTCTTATCT
TCAAAGAGCATATTGGGGGCACCAGGCTCTTCTCCTGCGCCTCCTGCGAC
ACTGTCCTGACCAACAGGGGGGAGTTCATCTCCACCAGGTTCACAGGAGC
AACTGGTAGAGCCTTCCTGTTCAACAAGGTGGTCAACTTGAACTACAGCG
AGGTGATGGACGGGGTGATGCTGACTGGGCGCCACATGGTCACTGGTCAG
AGATGTCTTCTGCAAGAACTCTGA
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