mRNA_F-distichus_contig105822.493.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_F-distichus_contig105822.493.1
Unique Name	mRNA_F-distichus_contig105822.493.1
Type	mRNA
Organism	Fucus distichus monoicous (Fucus distichus monoicous)

Homology

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BLAST of mRNA_F-distichus_contig105822.493.1 vs. uniprot
Match: D8LHS3_ECTSI (Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHS3_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 7.280e-48
Identity = 86/130 (66.15%), Postives = 103/130 (79.23%), Query Frame = 1

Query:    1 QDSNLKPMNWRDAVVSMKPGSGTRGLD-EAHESRATWEHLGRGEGKKASVRVRTRYGGPTPGEHGPWRWGQLEPGSPLEKELRAEIASYPRRLPRRLRRYYRDKVAWVTGADRGLGERVAINLAVNGAKV 387
            +D+NLKP+NWRDA+VSMKPGSGT GLD    ++  + E + R   +     V TRY GP PG HGPWRWGQL  GS LE++L+AEIAS+PRRLPRR+RRYY DKVAWVTGAD GLGE++AINLAVNGA+V
Sbjct:  201 RDTNLKPLNWRDAMVSMKPGSGTLGLDPHFDDTSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEEKLKAEIASFPRRLPRRVRRYYHDKVAWVTGADHGLGEQMAINLAVNGARV 330

[Close]

BLAST of mRNA_F-distichus_contig105822.493.1 vs. uniprot
Match: A0A6H5JSY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSY9_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 4.130e-28
Identity = 65/130 (50.00%), Postives = 79/130 (60.77%), Query Frame = 1

Query:    1 QDSNLKPMNWRDAVVSMKPGSGTRGLD-EAHESRATWEHLGRGEGKKASVRVRTRYGGPTPGEHGPWRWGQLEPGSPLEKELRAEIASYPRRLPRRLRRYYRDKVAWVTGADRGLGERVAINLAVNGAKV 387
            +D+NLKP+NWRDA+VSMKPGSGT GLD +  ++  + E + R   +     V TRY GP PG HGPWRWGQL  GS LE+                        V WVTGAD G GE++AINLAVNGA+V
Sbjct:  161 RDTNLKPLNWRDAMVSMKPGSGTLGLDPDFDDNSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEE------------------------VVWVTGADHGFGEQMAINLAVNGARV 266

[Close]

BLAST of mRNA_F-distichus_contig105822.493.1 vs. uniprot
Match: D7FJU3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJU3_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 7.100e-21
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 1

Query:    1 QDSNLKPMNWRDAVVSMKPGSGTRGLD-EAHESRATWEHLGRGEGKKASVRVRTRYGGPTPGEHGPWRWGQLEPGSPLEKELRAE 252
            +D+NLKP+NWRDA+VSMKPGSGT GLD    ++  + E + R   +     V TRY GP PG HGPWRWGQL  GS LE+  R E
Sbjct:   69 RDTNLKPLNWRDAMVSMKPGSGTLGLDPHFDDTSGSPEQVERRRERGLLKGVGTRYRGPPPGTHGPWRWGQLVKGSALEEGFRLE 153

The following BLAST results are available for this feature:

BLAST of mRNA_F-distichus_contig105822.493.1 vs. uniprot

BLAST of mRNA_F-distichus_contig105822.493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
D8LHS3_ECTSI	7.280e-48	66.15	Oxidoreductase n=1 Tax=Ectocarpus siliculosus TaxI...	[more]
A0A6H5JSY9_9PHAE	4.130e-28	50.00	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
D7FJU3_ECTSI	7.100e-21	55.29	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
F-distichus_contig105822	contig	F-distichus_contig105822:200..1784 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	162.2
Seed ortholog evalue	1.6e-37
Seed eggNOG ortholog	2880.D8LHS3
KEGG ko	ko:K11165
Hectar predicted targeting category	other localisation
GOs	GO:0000166,GO:0003674,GO:0003824,GO:0003845,GO:0005488,GO:0005496,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0006109,GO:0006140,GO:0006629,GO:0006694,GO:0006704,GO:0006706,GO:0006713,GO:0008150,GO:0008152,GO:0008202,GO:0008211,GO:0008289,GO:0008610,GO:0009056,GO:0009058,GO:0009605,GO:0009719,GO:0009725,GO:0009894,GO:0009987,GO:0009991,GO:0010033,GO:0010675,GO:0010817,GO:0012505,GO:0014070,GO:0016020,GO:0016042,GO:0016229,GO:0016491,GO:0016614,GO:0016616,GO:0019219,GO:0019220,GO:0019222,GO:0031090,GO:0031323,GO:0031329,GO:0031667,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032355,GO:0032870,GO:0033764,GO:0033993,GO:0034248,GO:0036094,GO:0042175,GO:0042221,GO:0042445,GO:0042446,GO:0042447,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043455,GO:0043456,GO:0043470,GO:0043471,GO:0044238,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045177,GO:0048037,GO:0050661,GO:0050662,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051174,GO:0051193,GO:0051196,GO:0051716,GO:0055114,GO:0060255,GO:0062012,GO:0065007,GO:0065008,GO:0070887,GO:0071310,GO:0071392,GO:0071396,GO:0071407,GO:0071495,GO:0071704,GO:0080090,GO:0097159,GO:0098827,GO:1901265,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901700,GO:1901701,GO:1902031
EggNOG free text desc.	oxidation-reduction process
EggNOG OGs	COG1028@1,KOG1205@2759
COG Functional cat.	IQ
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01000
Exons	4
Model size	387
Cds size	366
Stop	0
Start	1

Relationships

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_F-distichus_contig105822.493.1	prot_F-distichus_contig105822.493.1	Fucus distichus monoicous	polypeptide	F-distichus_contig105822 200..1763 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928983.668881-CDS-F-distichus_contig105822:199..277	1622928983.668881-CDS-F-distichus_contig105822:199..277	Fucus distichus monoicous	CDS	F-distichus_contig105822 200..277 -
1690885091.4019372-CDS-F-distichus_contig105822:199..277	1690885091.4019372-CDS-F-distichus_contig105822:199..277	Fucus distichus monoicous	CDS	F-distichus_contig105822 200..277 -
1622928983.681529-CDS-F-distichus_contig105822:626..698	1622928983.681529-CDS-F-distichus_contig105822:626..698	Fucus distichus monoicous	CDS	F-distichus_contig105822 627..698 -
1690885091.4145148-CDS-F-distichus_contig105822:626..698	1690885091.4145148-CDS-F-distichus_contig105822:626..698	Fucus distichus monoicous	CDS	F-distichus_contig105822 627..698 -
1622928983.6919649-CDS-F-distichus_contig105822:909..1016	1622928983.6919649-CDS-F-distichus_contig105822:909..1016	Fucus distichus monoicous	CDS	F-distichus_contig105822 910..1016 -
1690885091.4256904-CDS-F-distichus_contig105822:909..1016	1690885091.4256904-CDS-F-distichus_contig105822:909..1016	Fucus distichus monoicous	CDS	F-distichus_contig105822 910..1016 -
1622928983.7147436-CDS-F-distichus_contig105822:1654..1763	1622928983.7147436-CDS-F-distichus_contig105822:1654..1763	Fucus distichus monoicous	CDS	F-distichus_contig105822 1655..1763 -
1690885091.4420638-CDS-F-distichus_contig105822:1654..1763	1690885091.4420638-CDS-F-distichus_contig105822:1654..1763	Fucus distichus monoicous	CDS	F-distichus_contig105822 1655..1763 -

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622928983.7282765-UTR-F-distichus_contig105822:1763..1784	1622928983.7282765-UTR-F-distichus_contig105822:1763..1784	Fucus distichus monoicous	UTR	F-distichus_contig105822 1764..1784 -
1690885091.4532835-UTR-F-distichus_contig105822:1763..1784	1690885091.4532835-UTR-F-distichus_contig105822:1763..1784	Fucus distichus monoicous	UTR	F-distichus_contig105822 1764..1784 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at F-distichus_contig105822:200..1784-
coding sequence from alignment at F-distichus_contig105822:200..1784-

protein sequence of mRNA_F-distichus_contig105822.493.1

>prot_F-distichus_contig105822.493.1 ID=prot_F-distichus_contig105822.493.1|Name=mRNA_F-distichus_contig105822.493.1|organism=Fucus distichus monoicous|type=polypeptide|length=122bp
MNWRDAVVSMKPGSGTRGLDEAHESRATWEHLGRGEGKKASVRVRTRYGG
PTPGEHGPWRWGQLEPGSPLEKELRAEIASYPRRLPRRLRRYYRDKVAWV
TGADRGLGERVAINLAVNGAKV

mRNA from alignment at F-distichus_contig105822:200..1784-

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_F-distichus_contig105822.493.1 ID=mRNA_F-distichus_contig105822.493.1|Name=mRNA_F-distichus_contig105822.493.1|organism=Fucus distichus monoicous|type=mRNA|length=1585bp|location=Sequence derived from alignment at F-distichus_contig105822:200..1784- (Fucus distichus monoicous)
CAGGACTCCAACCTGAAGCCGATGAACTGGAGAGATGCCGTGGTCTCCAT
GAAACCCGGGTCTGGCACCAGGGGGCTCGACGAGGCGCACGAGAGCCGCG
CCACGTGGGAGCATCTAGGGCGTGGCGAGGGTGGCGCGAGTCTTCTGCTT
AAGGAGATTGTCGACGAGGTGTTGGATGAGTGGGAAGAATCCGTGGGGGA
CAGCCTTTTGAAGGATAGATTCCCTGTCATCCACCCGGAAATTTCGCCCG
AGGTACATACAGGATGGTGAGGTCGGGGCGACCGCGTTCTTAAGGTCGGT
CGATAGAATTGAGCGGGGGGGGGGGGGGGGGGGGTTGGGGAAAAAAACCC
TGGATAAATACCGATAGCCCCCCCCAAGCCCCGGGCGCCCGCCTCAAAAC
GTTCNNNNNNNNNNGGGTGGGTGGGGGGGCGCGGCGCTGGGAGGAGGGGG
GGGGAGGGGGGGGGGGGGGGGGGGGGGGGGGGGAGGTTCGTGGAAAATAC
CCTGGATAACTACCGATAGCGCCGCTCAAGCGCCTGGCGACCTGCTTACA
ACGTTCCGGCACTCGGGTTCGTGATTTACTTCTCCGCCATGACCACCAAA
GCAGATCAAATCAGAGCCATATATATATATATGTGTGACCATATATATAT
ATAATATATAAGATTTTTCTCCCTCGTTTTGCGTCATTTCTTTTATATTT
TGGCGGGGTCCCGCACGAACAAAAGATTTCGGGGACGGACGCTCGGAGGT
CATACCGACGAGATCTAGGCAAGAAGGCGTCGGTCAGGGTGAGGACAAGG
TACGGTGGTCCCACTCCGGGGGAGCACGGCCCGTGGCGGTGGGGCCAGCT
CGAGCCCGGATCGCCCCTGGAAAAGGTACGAGGAAAGCCGATGTCTGACC
CGTGATTCCTGAGCGTATCCGGAGTAGATGCAGGCCATCCTGCCCCGTTC
GGGAGGTGACAGAGAGGGTTGATGCCTATCCGCATCACCTCGCCTCGCGT
TCCTACGCATGCCCTCCGTGGGTGTTTGTTTATTTGTTTATTTATTTATT
GTGGCTTTTTTTTGGGGGGGTGACCTTCATTTTCAGGAGCTGAGGGCGGA
GATCGCGTCCTATCCGCGCAGGCTGCCGCGGCGGCTACGGCGGTACTATC
GAGACAAGGTGATCAAAATGTATTTTAGAAGCGCTCGGTGAGAGGGCAGA
GCAGGCTGCTCGTGAAAAGGCGGACGAATGAGGACGGCCTGTTTTCGTGC
ACGGTAGGCCTCGCGGGCACTCTATGTGGGTTTGGGGAGCCCCTCTGTGA
TGGCCCGTCTAGATAGTGCCGCGGCCCCCCAATGGCCTATAGTTGGTACG
TACGAGAAGTCTAGAACGCTTTCCGCCGCGGCACGGGCATCCGCAACCTC
TCCACTCCAATTTGGTTATCCCGCCGTATAGGGAGGACGGGGACGAGGGA
ATCGGGCCCGCCTCTGTGTCTCCATCGTTACCGGCGCCGCTTGCCACCCC
GAAGCAGGTGGCCTGGGTGACGGGCGCCGACCGTGGGCTGGGAGAGCGTG
TGGCTATCAACCTCGCGGTCAACGGCGCCAAGGTG

Coding sequence (CDS) from alignment at F-distichus_contig105822:200..1784-

>mRNA_F-distichus_contig105822.493.1 ID=mRNA_F-distichus_contig105822.493.1|Name=mRNA_F-distichus_contig105822.493.1|organism=Fucus distichus monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at F-distichus_contig105822:200..1784- (Fucus distichus monoicous)
ATGAACTGGAGAGATGCCGTGGTCTCCATGAAACCCGGGTCTGGCACCAG
GGGGCTCGACGAGGCGCACGAGAGCCGCGCCACGTGGGAGCATCTAGGGC
GTGGCGAGGATGAACTGGAGAGATGCCGTGGTCTCCATGAAACCCGGGTC
TGGCACCAGGGGGCTCGACGAGGCGCACGAGAGCCGCGCCACGTGGGAGC
ATCTAGGGCGTGGCGAGGGCAAGAAGGCGTCGGTCAGGGTGAGGACAAGG
TACGGTGGTCCCACTCCGGGGGAGCACGGCCCGTGGCGGTGGGGCCAGCT
CGAGCCCGGATCGCCCCTGGAAAAGGCAAGAAGGCGTCGGTCAGGGTGAG
GACAAGGTACGGTGGTCCCACTCCGGGGGAGCACGGCCCGTGGCGGTGGG
GCCAGCTCGAGCCCGGATCGCCCCTGGAAAAGGAGCTGAGGGCGGAGATC
GCGTCCTATCCGCGCAGGCTGCCGCGGCGGCTACGGCGGTACTATCGAGA
CAAGGAGCTGAGGGCGGAGATCGCGTCCTATCCGCGCAGGCTGCCGCGGC
GGCTACGGCGGTACTATCGAGACAAGGTGGCCTGGGTGACGGGCGCCGAC
CGTGGGCTGGGAGAGCGTGTGGCTATCAACCTCGCGGTCAACGGCGCCAA
GGTGGTGGCCTGGGTGACGGGCGCCGACCGTGGGCTGGGAGAGCGTGTGG
CTATCAACCTCGCGGTCAACGGCGCCAAGGTG