mRNA_F-distichus_contig105684.483.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105684.483.1
Unique NamemRNA_F-distichus_contig105684.483.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105684.483.1 vs. uniprot
Match: A0A6H5JCT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT8_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 5.910e-41
Identity = 76/130 (58.46%), Postives = 91/130 (70.00%), Query Frame = 1 
Query:   22 ASSTKELDPNHARVLVVGPILSGKTTLVESLCRACGGDTVASRRNRRPPPTVGCNVEVKLLAGGRPYRSVEFWDVGGNPEAAPARRMFYEDSSISGVLLVYDVTNPRRAFLSWSLRELHAWAAELASAGV 411
            AS+ K  DP+HAR+LVVGP+ +GKTTLV S C    G+ V   R     PTVGC+V+VKLLAGG P RS+EFWDVGG P+AA AR MF+E    +GVLLVYDV+ PR      SLR+L  W AEL SAG+
Sbjct:    3 ASAGKNFDPHHARILVVGPMAAGKTTLVHSFCHGGVGNGVPGNRL----PTVGCSVDVKLLAGGHPNRSIEFWDVGGRPDAALARGMFFEGCEAAGVLLVYDVSTPR------SLRDLRVWVAELDSAGI 122
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BLAST of mRNA_F-distichus_contig105684.483.1 vs. uniprot
Match: D8LGP2_ECTSI (LIP1, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP2_ECTSI)

HSP 1 Score: 145 bits (367), Expect = 1.150e-39
Identity = 77/130 (59.23%), Postives = 92/130 (70.77%), Query Frame = 1 
Query:   22 ASSTKELDPNHARVLVVGPILSGKTTLVESLCRACGGDTVASRRNRRPPPTVGCNVEVKLLAGGRPYRSVEFWDVGGNPEAAPARRMFYEDSSISGVLLVYDVTNPRRAFLSWSLRELHAWAAELASAGV 411
            AS+ K  DP+HARVLVVGP+ +GKTTLV S C   GG+ V         PTVGC+V+VKLLAGG P RS+EFWDVGG+P+AA AR MF+E    +GVLLVYDV+ PR      SLR+L  W AEL SAG+
Sbjct:    3 ASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNGVPGNTL----PTVGCSVDVKLLAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPR------SLRDLRVWVAELDSAGI 122
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105684.483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JCT8_9PHAE5.910e-4158.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LGP2_ECTSI1.150e-3959.23LIP1, Ras superfamily GTPase n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105684contigF-distichus_contig105684:23..1582 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.9
Seed ortholog evalue1.7e-08
Seed eggNOG ortholog27923.ML32073a-PA
Preferred nameRABL3
KEGG koko:K07933
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003924,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111
EggNOG free text desc.RAB, member of RAS oncogene family-like 3
EggNOG OGs2CN0E@1,2QT3S@2759,39WC4@33154,3BGWV@33208
COG Functional cat.U
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031
Exons3
Model size411
Cds size411
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105684.483.1prot_F-distichus_contig105684.483.1Fucus distichus monoicouspolypeptideF-distichus_contig105684 23..1582 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928981.4010487-CDS-F-distichus_contig105684:22..741622928981.4010487-CDS-F-distichus_contig105684:22..74Fucus distichus monoicousCDSF-distichus_contig105684 23..74 -
1690885090.7800632-CDS-F-distichus_contig105684:22..741690885090.7800632-CDS-F-distichus_contig105684:22..74Fucus distichus monoicousCDSF-distichus_contig105684 23..74 -
1622928981.4203315-CDS-F-distichus_contig105684:502..6631622928981.4203315-CDS-F-distichus_contig105684:502..663Fucus distichus monoicousCDSF-distichus_contig105684 503..663 -
1690885090.7970371-CDS-F-distichus_contig105684:502..6631690885090.7970371-CDS-F-distichus_contig105684:502..663Fucus distichus monoicousCDSF-distichus_contig105684 503..663 -
1622928981.434765-CDS-F-distichus_contig105684:1384..15821622928981.434765-CDS-F-distichus_contig105684:1384..1582Fucus distichus monoicousCDSF-distichus_contig105684 1385..1582 -
1690885090.805996-CDS-F-distichus_contig105684:1384..15821690885090.805996-CDS-F-distichus_contig105684:1384..1582Fucus distichus monoicousCDSF-distichus_contig105684 1385..1582 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105684.483.1

>prot_F-distichus_contig105684.483.1 ID=prot_F-distichus_contig105684.483.1|Name=mRNA_F-distichus_contig105684.483.1|organism=Fucus distichus monoicous|type=polypeptide|length=137bp
MYSFPEGASSTKELDPNHARVLVVGPILSGKTTLVESLCRACGGDTVASR
RNRRPPPTVGCNVEVKLLAGGRPYRSVEFWDVGGNPEAAPARRMFYEDSS
ISGVLLVYDVTNPRRAFLSWSLRELHAWAAELASAGV
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mRNA from alignment at F-distichus_contig105684:23..1582-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105684.483.1 ID=mRNA_F-distichus_contig105684.483.1|Name=mRNA_F-distichus_contig105684.483.1|organism=Fucus distichus monoicous|type=mRNA|length=1560bp|location=Sequence derived from alignment at F-distichus_contig105684:23..1582- (Fucus distichus monoicous)
ATGTACTCCTTCCCGGAAGGCGCCTCCTCCACGAAGGAGCTCGACCCCAA
CCACGCTCGAGTCCTGGTGGTCGGGCCAATACTGTCGGGGAAGACCACTC
TGGTGGAGTCTCTCTGCCGAGCCTGTGGAGGCGATACGGTCGCTTCGCGA
CGGAATCGGAGACCGCCTCCAACGGTTGGCTGCAACGTCGAAGTCAAGGT
GCCGTGAGTTGCCGCCAAGAGGGCACGGCCCAGAGGCCACCAAGTGTCTT
TCGCACGCGACTGCAACATTCCGTAGGGTGTCGAGTCGGGACCTTCGTCA
CAACTGTAGTAAATACACGTTTGAGTCCAGCTGTGTCTTCAAAATCAGCA
AAACGTGTGTTCTGTTGTAGCCGGTTGCGCCGATTCTTACGATGAGCATT
GAACGGAGAGGCACACAGCATGCCGCTGAACCAGGGCACCAAAACAGTCT
GTCGCACTTGCGCTCTGGTCTTGGGCAAGTTTGCGCTGTCGGTACATTCC
AAACTGCGCCACGCCCGGCGTATAGATGCAGCCCTAGATCTTCACACTTC
ACTGATTGAGAGCACCACCCTACCTCTTAAGCTATCGTCCGTGTACTGTA
TATACGAAAGAGTGGATGCCCATCTTTCCTCTCTCTCTCGAGAAAAAGAC
TTTTGACTGCCAAAGTCATTGCTTGGAAGAGTTGATGGTTTGACTATTTT
TCCTGCGTTTTTTGCGTCCCCGAGTAGAGTACTCTCCACCTATCCGCTGC
GCTGCGAGCATCTACTGGCACATTATTCTGTGTAGATGGAGGCGTTTTGA
TGGTGAGCCTTAAATGGGAGTTGCTGCTGCAATGCTGTACCGCAATGTTC
TTGCGAGAAGACGCACGTGCGAACTACCTGTATGTTTGCCCCCGTCGTGC
CGACTTTGATTTGCGCAAGCTCCTAGCCGGCGGGCGACCGTATCGATCTG
TGGAGTTCTGGGACGTCGGAGGCAACCCGGAGGCCGCGCCCGCCCGAAGA
ATGTTCTACGAAGATTCTTCGATAAGTGGAGTTCTCCTTGTCTACGACGT
GACCAATCCAAGGCGAGCATTTTTGAGTTGGTTAAAGAACGAGCCTGCCG
GCAGTCCGGATACAGTTGTTCATATTTTTTGCAGTATACTGTTGTCGTCT
TTTTTGTCTTGGTACATGTTGGTATCTCGAATCAGTCGACGCCATCGCGC
CCGGACCTGAAAGTCGGAACCGTCGGGAACATCGCGCTCGACAAATCGCC
CGGAGGGTTTAGCTCGCCCTTAGTCTCGAGGGCCTGGTCCGAGAAGTCGC
TGGACACATACCCGTTCTATTTAGAATTCATTGGGGGGGAAAACCAGATA
CCAAACAAAATATAACTCGAAAAGAAAGCAACGTTTTTCCTCCTCAGACT
ATGACGTAATTTGTATTTTTTCATCATACAGCAGTTACGGCGCTCAACGA
CAGCGCGTTGCAAGCGTTTTTCGAGAGTCTTCATTCATTTTGCGAACCGC
CAAAGCAGGTCGCTGCGCGAGCTTCACGCGTGGGCGGCCGAGCTGGCCTC
CGCGGGGGTT
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Coding sequence (CDS) from alignment at F-distichus_contig105684:23..1582-

>mRNA_F-distichus_contig105684.483.1 ID=mRNA_F-distichus_contig105684.483.1|Name=mRNA_F-distichus_contig105684.483.1|organism=Fucus distichus monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at F-distichus_contig105684:23..1582- (Fucus distichus monoicous)
ATGTACTCCTTCCCGGAAGGCGCCTCCTCCACGAAGGAGCTCGACCCCAA
CCACGCTCGAGTCCTGGTGGTCGGGCCAATACTGTCGGGGAAGACCACTC
TGGTGGAGTCTCTCTGCCGAGCCTGTGGAGGCGATACGGTCGCTTCGCGA
CGGAATCGGAGACCGCCTCCAACGGTTGGCTGCAACGTCGAAGTCAAGAT
GTACTCCTTCCCGGAAGGCGCCTCCTCCACGAAGGAGCTCGACCCCAACC
ACGCTCGAGTCCTGGTGGTCGGGCCAATACTGTCGGGGAAGACCACTCTG
GTGGAGTCTCTCTGCCGAGCCTGTGGAGGCGATACGGTCGCTTCGCGACG
GAATCGGAGACCGCCTCCAACGGTTGGCTGCAACGTCGAAGTCAAGCTCC
TAGCCGGCGGGCGACCGTATCGATCTGTGGAGTTCTGGGACGTCGGAGGC
AACCCGGAGGCCGCGCCCGCCCGAAGAATGTTCTACGAAGATTCTTCGAT
AAGTGGAGTTCTCCTTGTCTACGACGTGACCAATCCAAGGCGAGCATTTT
TGAGTTGCTCCTAGCCGGCGGGCGACCGTATCGATCTGTGGAGTTCTGGG
ACGTCGGAGGCAACCCGGAGGCCGCGCCCGCCCGAAGAATGTTCTACGAA
GATTCTTCGATAAGTGGAGTTCTCCTTGTCTACGACGTGACCAATCCAAG
GCGAGCATTTTTGAGTTGGTCGCTGCGCGAGCTTCACGCGTGGGCGGCCG
AGCTGGCCTCCGCGGGGGTTGTCGCTGCGCGAGCTTCACGCGTGGGCGGC
CGAGCTGGCCTCCGCGGGGGTT
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