mRNA_F-distichus_contig105520.478.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105520.478.1
Unique NamemRNA_F-distichus_contig105520.478.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105520.478.1 vs. uniprot
Match: D7FYY5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY5_ECTSI)

HSP 1 Score: 129 bits (323), Expect = 2.240e-32
Identity = 70/102 (68.63%), Postives = 78/102 (76.47%), Query Frame = 1 
Query:    1 QVLWSFATLVGNSDSPTQELAGLLGALAEGFESEQAEGV-----------AGRSSGLDAATACDVLWSFAKLGHPAHSLCEAMARDLVQ---QLPPSSVASL 264
            QVLW+FATLVG +DSP  ELAGL+GALAEGFE+E A G+           AGR  GLDAATACDVLWSFA +GHPAHSLCEAMARDLV    +LPPSSV+ L
Sbjct:  838 QVLWAFATLVGKADSPAHELAGLVGALAEGFETEGARGMGXXXXXXXVSAAGREGGLDAATACDVLWSFATMGHPAHSLCEAMARDLVNKVPELPPSSVSQL 939
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BLAST of mRNA_F-distichus_contig105520.478.1 vs. uniprot
Match: A0A6H5JR07_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR07_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.520e-29
Identity = 63/88 (71.59%), Postives = 70/88 (79.55%), Query Frame = 1 
Query:    1 QVLWSFATLVGNSDSPTQELAGLLGALAEGFESEQAEGV-----------AGRSSGLDAATACDVLWSFAKLGHPAHSLCEAMARDLV 231
            +VLW+FATLVG +DSP QELAGL+GALAEGFE+E A G+           AGR  GLDAATACDVLWSFA LGHPAHSLCEAMARDL+
Sbjct:  748 RVLWAFATLVGKADSPAQELAGLVGALAEGFETEGARGMGGGGXXXXVSAAGREGGLDAATACDVLWSFATLGHPAHSLCEAMARDLL 835
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105520.478.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYY5_ECTSI2.240e-3268.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JR07_9PHAE1.520e-2971.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105520contigF-distichus_contig105520:570..1830 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928980.7485135-CDS-F-distichus_contig105520:569..7971622928980.7485135-CDS-F-distichus_contig105520:569..797Fucus distichus monoicousCDSF-distichus_contig105520 570..797 +
1690885090.3557591-CDS-F-distichus_contig105520:569..7971690885090.3557591-CDS-F-distichus_contig105520:569..797Fucus distichus monoicousCDSF-distichus_contig105520 570..797 +
1622928980.76939-CDS-F-distichus_contig105520:1728..18301622928980.76939-CDS-F-distichus_contig105520:1728..1830Fucus distichus monoicousCDSF-distichus_contig105520 1729..1830 +
1690885090.4303775-CDS-F-distichus_contig105520:1728..18301690885090.4303775-CDS-F-distichus_contig105520:1728..1830Fucus distichus monoicousCDSF-distichus_contig105520 1729..1830 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105520.478.1prot_F-distichus_contig105520.478.1Fucus distichus monoicouspolypeptideF-distichus_contig105520 570..1830 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105520.478.1

>prot_F-distichus_contig105520.478.1 ID=prot_F-distichus_contig105520.478.1|Name=mRNA_F-distichus_contig105520.478.1|organism=Fucus distichus monoicous|type=polypeptide|length=110bp
QVLWSFATLVGNSDSPTQELAGLLGALAEGFESEQAEGVAGRSSGLDAAT
ACDVLWSFAKLGHPAHSLCEAMARDLVQQLPPSSVASLAWAYGKMRYPSA
ELMERVVRVL
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mRNA from alignment at F-distichus_contig105520:570..1830+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105520.478.1 ID=mRNA_F-distichus_contig105520.478.1|Name=mRNA_F-distichus_contig105520.478.1|organism=Fucus distichus monoicous|type=mRNA|length=1261bp|location=Sequence derived from alignment at F-distichus_contig105520:570..1830+ (Fucus distichus monoicous)
CAGGTGCTGTGGTCGTTCGCCACTCTTGTGGGTAACTCCGACTCCCCGAC
GCAAGAGCTGGCCGGCCTGCTCGGTGCTCTGGCTGAGGGTTTCGAGTCGG
AGCAAGCGGAAGGGGTTGCGGGGAGAAGCAGCGGACTCGACGCCGCGACA
GCTTGCGACGTTCTGTGGTCGTTCGCGAAGCTCGGTCACCCGGCGCACAG
CCTTTGCGAGGCAATGGCCAGAGACCTGGTTGACCAGGCGAGAGGGTACA
TTGGGAGAGTGAGCAGAGATATGATGGAGCGGGGGGGGGGGGAAGTGACA
ACCCCGTAAGGGAAAACGCCGGTAAAAGTCTACAAAACTCGATACCGTAT
GATAACTGTAAACTACCTATACTACGGGGGGAGGACCTATCACAGGGTGT
CGTGCACACCAAGAGGCGGAAGAAACGGGGAGAAGATGGGGGAGGGGATA
GGGGGGTGAAAGGGAAAGTGTTAACCTCGCGGGAAGGGGCCTAAACATTT
CGCACCGTGTGACGAGTCCAGCAGGAGCGGTGGACCTACAGATCCTCATG
TAGGTCAGGAAGCGATACAGGACGTGGCGGCGGCAATCGTCGCCGTCTGT
TTGTTGTTGGTGTTGTTGTGTCGTGAGAACGCGGCGTGGATACGGCTCGC
GCTGCGGTCGGTTTACTCGGGGTCGGAGGGCACAAGGGTGCGCTCTCGGT
GAGACAGAGGAAGAGTTTTTATATTTCCCCCCACCCTGTCCGCATCCGCA
CCCGCGCCGTCGGTTGAGTTTTTATATTTCCCCCCACCCTGTCCGCATCC
GCACCCGCGCCGTCGGTTGATTTGATCGTCTCTTTCGCCGCGCGACACTG
ACGACGATTTTATACTAATAATACTTTCATTCTCTATTCGAAAACCAAAC
AAACGTGTCAGTCTTTTGGCCGTTTGCGTCTATCTTTCGCATCTATCCCT
CCCTTTTGCCCGCTCATCGCTGCTGAATTCGGGCCCATGAGGGATGTGGT
AGGGTTGACTGGTGAGCATCCCGACGGCTTCTTCGCGCCGTGTGTTTCGC
TCGCCTCTGTACCTTGCCTAGCAGCAGCCGAGCCTTGTCTTGCCTTGCAT
TGCCGAGGTCTTTCTTTCCTCGAACTCACTTGAACTCTTTACTGCGATGG
TGCTTGCAGGTGCAGCAGCTGCCGCCGTCTTCCGTGGCGAGCCTGGCGTG
GGCATACGGCAAGATGAGATACCCGTCGGCAGAGCTGATGGAGCGCGTGG
TAAGGGTTTTG
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Coding sequence (CDS) from alignment at F-distichus_contig105520:570..1830+

>mRNA_F-distichus_contig105520.478.1 ID=mRNA_F-distichus_contig105520.478.1|Name=mRNA_F-distichus_contig105520.478.1|organism=Fucus distichus monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at F-distichus_contig105520:570..1830+ (Fucus distichus monoicous)
CAGGTGCTGTGGTCGTTCGCCACTCTTGTGGGTAACTCCGACTCCCCGAC
GCAAGAGCTGGCCGGCCTGCTCGGTGCTCTGGCTGAGGGTTTCGAGTCGG
AGCAAGCGGAAGGGGTTGCGGGGAGAAGCAGCGGACTCGACGCCGCGACA
GCTTGCGACGTTCTGTGGTCGTTCGCGAAGCTCGGTCACCCGGCGCACAG
CCTTTGCGAGGCAATGGCCAGAGACCTGCAGGTGCTGTGGTCGTTCGCCA
CTCTTGTGGGTAACTCCGACTCCCCGACGCAAGAGCTGGCCGGCCTGCTC
GGTGCTCTGGCTGAGGGTTTCGAGTCGGAGCAAGCGGAAGGGGTTGCGGG
GAGAAGCAGCGGACTCGACGCCGCGACAGCTTGCGACGTTCTGTGGTCGT
TCGCGAAGCTCGGTCACCCGGCGCACAGCCTTTGCGAGGCAATGGCCAGA
GACCTGGTGCAGCAGCTGCCGCCGTCTTCCGTGGCGAGCCTGGCGTGGGC
ATACGGCAAGATGAGATACCCGTCGGCAGAGCTGATGGAGCGCGTGGTAA
GGGTTTTGGTGCAGCAGCTGCCGCCGTCTTCCGTGGCGAGCCTGGCGTGG
GCATACGGCAAGATGAGATACCCGTCGGCAGAGCTGATGGAGCGCGTGGT
AAGGGTTTTG
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