mRNA_F-distichus_contig10544.471.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10544.471.1
Unique NamemRNA_F-distichus_contig10544.471.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: A0A6P4Z152_BRABE (uncharacterized protein LOC109472382 isoform X1 n=35 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4Z152_BRABE)

HSP 1 Score: 52.0 bits (123), Expect = 1.060e-6
Identity = 20/35 (57.14%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 CDPNPCTNGGSCSRSGDGYQCSCAIGYGGTDCETD 105
            CDPNPC NGG+C++ G+ Y C C+ GY G +CE D
Sbjct: 1397 CDPNPCENGGTCTKRGNSYNCKCSPGYAGRNCEKD 1431
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: A7T7Q5_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7T7Q5_NEMVE)

HSP 1 Score: 47.8 bits (112), Expect = 8.070e-6
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 CDPNPCTNGGSCSRSGDGYQCSCAIGYGGTDCE 99
            C+PNPC NGG+C   G GY+C+CA G+ G +CE
Sbjct:    1 CEPNPCRNGGTCYDVGQGYECTCARGFKGENCE 33
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: A0A820PC48_9BILA (Hypothetical protein (Fragment) n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A820PC48_9BILA)

HSP 1 Score: 47.8 bits (112), Expect = 8.530e-6
Identity = 22/35 (62.86%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 CDPNPCTNGGSCSR-SGDGYQCSCAIGYGGTDCET 102
            C PNPC NGG+C   +G+GYQC CA G  GT+CET
Sbjct:    6 CSPNPCQNGGTCRTVNGNGYQCICAAGTTGTNCET 40
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: UPI0003F0DAAD (tenascin-X-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0DAAD)

HSP 1 Score: 48.5 bits (114), Expect = 1.790e-5
Identity = 20/35 (57.14%), Postives = 25/35 (71.43%), Query Frame = 1 
Query:    1 CDPNPCTNGGSCSRSGDGYQCSCAIGYGGTDCETD 105
            C  NPC NGG C+ +  GY+C CA GY GT+CET+
Sbjct:  192 CASNPCQNGGQCTNTPSGYECECAEGYTGTNCETE 226
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: A7SR75_NEMVE (Predicted protein (Fragment) n=1 Tax=Nematostella vectensis TaxID=45351 RepID=A7SR75_NEMVE)

HSP 1 Score: 47.8 bits (112), Expect = 3.370e-5
Identity = 19/33 (57.58%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:    1 CDPNPCTNGGSCSRSGDGYQCSCAIGYGGTDCE 99
            C+PNPC NGG+C   G GY+C+CA G+ G +CE
Sbjct:   10 CEPNPCRNGGTCYDVGQGYECTCARGFKGENCE 42
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: A0A7N5ZZP6_ANATE (Uncharacterized protein n=1 Tax=Anabas testudineus TaxID=64144 RepID=A0A7N5ZZP6_ANATE)

HSP 1 Score: 47.4 bits (111), Expect = 4.590e-5
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 CDPNPCTNGGSCSRSGDGYQCSCAIGYGGTDCETD 105
            C  + C NGGSCS++G+ Y+CSCA GY G  CETD
Sbjct: 1575 CTEDFCLNGGSCSKNGNNYKCSCAPGYSGDRCETD 1609
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: UPI000E45D262 (versican core protein n=1 Tax=Anabas testudineus TaxID=64144 RepID=UPI000E45D262)

HSP 1 Score: 47.4 bits (111), Expect = 4.620e-5
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:    1 CDPNPCTNGGSCSRSGDGYQCSCAIGYGGTDCETD 105
            C  + C NGGSCS++G+ Y+CSCA GY G  CETD
Sbjct:  352 CTEDFCLNGGSCSKNGNNYKCSCAPGYSGDRCETD 386
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: UPI00139018F0 (uncharacterized protein LOC5520461 n=1 Tax=Nematostella vectensis TaxID=45351 RepID=UPI00139018F0)

HSP 1 Score: 47.0 bits (110), Expect = 6.260e-5
Identity = 20/34 (58.82%), Postives = 25/34 (73.53%), Query Frame = 1 
Query:    1 CDPNPCTNGGSCSR--SGDGYQCSCAIGYGGTDC 96
            C+PNPC NGG+CSR  SG  Y C+C +GY G +C
Sbjct: 2780 CEPNPCANGGTCSRISSGSNYTCTCPVGYTGRNC 2813
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: A0A7K8DEJ8_9CORV (Agrin (Fragment) n=1 Tax=Eulacestoma nigropectus TaxID=461239 RepID=A0A7K8DEJ8_9CORV)

HSP 1 Score: 47.0 bits (110), Expect = 6.270e-5
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:    7 PNPCTNGGSCSRSGDGYQCSCAIGYGGTDCE 99
            PNPC NGGSCS S +GY+CSC  G+ G  CE
Sbjct: 1816 PNPCQNGGSCSPSMEGYECSCQRGFSGAHCE 1846
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BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Match: A0A7K7CGG9_APHCE (Agrin (Fragment) n=1 Tax=Aphelocoma coerulescens TaxID=39617 RepID=A0A7K7CGG9_APHCE)

HSP 1 Score: 47.0 bits (110), Expect = 6.270e-5
Identity = 20/31 (64.52%), Postives = 23/31 (74.19%), Query Frame = 1 
Query:    7 PNPCTNGGSCSRSGDGYQCSCAIGYGGTDCE 99
            PNPC NGGSCS S +GY+CSC  G+ G  CE
Sbjct: 1842 PNPCQNGGSCSPSMEGYECSCQRGFSGAHCE 1872
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10544.471.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6P4Z152_BRABE1.060e-657.14uncharacterized protein LOC109472382 isoform X1 n=... [more]
A7T7Q5_NEMVE8.070e-657.58Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A0A820PC48_9BILA8.530e-662.86Hypothetical protein (Fragment) n=1 Tax=Adineta st... [more]
UPI0003F0DAAD1.790e-557.14tenascin-X-like n=1 Tax=Saccoglossus kowalevskii T... [more]
A7SR75_NEMVE3.370e-557.58Predicted protein (Fragment) n=1 Tax=Nematostella ... [more]
A0A7N5ZZP6_ANATE4.590e-560.00Uncharacterized protein n=1 Tax=Anabas testudineus... [more]
UPI000E45D2624.620e-560.00versican core protein n=1 Tax=Anabas testudineus T... [more]
UPI00139018F06.260e-558.82uncharacterized protein LOC5520461 n=1 Tax=Nematos... [more]
A0A7K8DEJ8_9CORV6.270e-564.52Agrin (Fragment) n=1 Tax=Eulacestoma nigropectus T... [more]
A0A7K7CGG9_APHCE6.270e-564.52Agrin (Fragment) n=1 Tax=Aphelocoma coerulescens T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10544contigF-distichus_contig10544:1425..1529 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size105
Cds size105
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.8255432-CDS-F-distichus_contig10544:1424..15291622928979.8255432-CDS-F-distichus_contig10544:1424..1529Fucus distichus monoicousCDSF-distichus_contig10544 1425..1529 -
1690885089.7317233-CDS-F-distichus_contig10544:1424..15291690885089.7317233-CDS-F-distichus_contig10544:1424..1529Fucus distichus monoicousCDSF-distichus_contig10544 1425..1529 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10544.471.1prot_F-distichus_contig10544.471.1Fucus distichus monoicouspolypeptideF-distichus_contig10544 1425..1529 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10544.471.1

>prot_F-distichus_contig10544.471.1 ID=prot_F-distichus_contig10544.471.1|Name=mRNA_F-distichus_contig10544.471.1|organism=Fucus distichus monoicous|type=polypeptide|length=35bp
CDPNPCTNGGSCSRSGDGYQCSCAIGYGGTDCETD
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mRNA from alignment at F-distichus_contig10544:1425..1529-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10544.471.1 ID=mRNA_F-distichus_contig10544.471.1|Name=mRNA_F-distichus_contig10544.471.1|organism=Fucus distichus monoicous|type=mRNA|length=105bp|location=Sequence derived from alignment at F-distichus_contig10544:1425..1529- (Fucus distichus monoicous)
TGTGACCCGAATCCTTGCACCAACGGCGGATCTTGCTCAAGATCTGGTGA
TGGGTATCAGTGCTCCTGTGCGATCGGCTACGGCGGGACGGATTGTGAAA
CCGAC
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Coding sequence (CDS) from alignment at F-distichus_contig10544:1425..1529-

>mRNA_F-distichus_contig10544.471.1 ID=mRNA_F-distichus_contig10544.471.1|Name=mRNA_F-distichus_contig10544.471.1|organism=Fucus distichus monoicous|type=CDS|length=210bp|location=Sequence derived from alignment at F-distichus_contig10544:1425..1529- (Fucus distichus monoicous)
TGTGACCCGAATCCTTGCACCAACGGCGGATCTTGCTCAAGATCTGGTGA
TGGGTATCAGTGCTCCTGTGCGATCGGCTACGGCGGGACGGATTGTGAAA
CCGACTGTGACCCGAATCCTTGCACCAACGGCGGATCTTGCTCAAGATCT
GGTGATGGGTATCAGTGCTCCTGTGCGATCGGCTACGGCGGGACGGATTG
TGAAACCGAC
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