mRNA_F-distichus_contig105365.463.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105365.463.1
Unique NamemRNA_F-distichus_contig105365.463.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105365.463.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 1.410e-19
Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1 
Query:    7 ILDADGTNDLDIDEFTTTMMKLMTDGPDEATLERGRRVVVTEAFKKADTDHSGSLDVDEVTALLKEAD 210
            +LDADGT  LDIDEFT+TMM+LMTDGPDE TL R RR  +T+AF +ADTD SGSLD  E+  LLK +D
Sbjct: 1265 LLDADGTETLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGSLDAGEILELLKSSD 1332
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BLAST of mRNA_F-distichus_contig105365.463.1 vs. uniprot
Match: A0A6H5K9E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E5_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 1.500e-17
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   19 DGTNDLDIDEFTTTMMKLMTDGPDEATLERGRRVVVTEAFKKADTDHSGSLDVDEVTALLKEAD 210
            DGT+ LDIDEFT+TMM+LMTDGPDE TL R RR  +T+AF +ADTD SGSLD  E+  LLK +D
Sbjct: 1296 DGTDTLDIDEFTSTMMRLMTDGPDEVTLARARRQALTKAFDEADTDGSGSLDAGEILELLKSSD 1359
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105365.463.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB75_ECTSI1.410e-1967.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K9E5_9PHAE1.500e-1767.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105365contigF-distichus_contig105365:1378..1587 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue8.8e-17
Seed eggNOG ortholog2880.D8LB75
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K02183,ko:K12486
KEGG ReactionR03656
KEGG Pathwayko00970,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04144,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00970,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04144,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5043@1,COG5126@1,KOG0027@2759,KOG1809@2759
EC6.1.1.5
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko03036,ko04131,ko04147
Exons1
Model size210
Cds size210
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.2994092-CDS-F-distichus_contig105365:1377..15871622928979.2994092-CDS-F-distichus_contig105365:1377..1587Fucus distichus monoicousCDSF-distichus_contig105365 1378..1587 +
1690885089.3149004-CDS-F-distichus_contig105365:1377..15871690885089.3149004-CDS-F-distichus_contig105365:1377..1587Fucus distichus monoicousCDSF-distichus_contig105365 1378..1587 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105365.463.1prot_F-distichus_contig105365.463.1Fucus distichus monoicouspolypeptideF-distichus_contig105365 1378..1587 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105365.463.1

>prot_F-distichus_contig105365.463.1 ID=prot_F-distichus_contig105365.463.1|Name=mRNA_F-distichus_contig105365.463.1|organism=Fucus distichus monoicous|type=polypeptide|length=70bp
YRILDADGTNDLDIDEFTTTMMKLMTDGPDEATLERGRRVVVTEAFKKAD
TDHSGSLDVDEVTALLKEAD
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mRNA from alignment at F-distichus_contig105365:1378..1587+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105365.463.1 ID=mRNA_F-distichus_contig105365.463.1|Name=mRNA_F-distichus_contig105365.463.1|organism=Fucus distichus monoicous|type=mRNA|length=210bp|location=Sequence derived from alignment at F-distichus_contig105365:1378..1587+ (Fucus distichus monoicous)
TACAGAATCCTGGACGCGGACGGAACAAATGATCTCGACATCGACGAGTT
CACCACCACCATGATGAAGCTGATGACGGACGGGCCGGACGAGGCCACGC
TGGAGCGCGGGCGGCGCGTGGTGGTGACGGAGGCATTCAAGAAGGCGGAC
ACCGACCACTCGGGCTCCTTGGACGTGGACGAGGTGACAGCGCTGCTCAA
GGAAGCGGAC
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Coding sequence (CDS) from alignment at F-distichus_contig105365:1378..1587+

>mRNA_F-distichus_contig105365.463.1 ID=mRNA_F-distichus_contig105365.463.1|Name=mRNA_F-distichus_contig105365.463.1|organism=Fucus distichus monoicous|type=CDS|length=420bp|location=Sequence derived from alignment at F-distichus_contig105365:1378..1587+ (Fucus distichus monoicous)
TACAGAATCCTGGACGCGGACGGAACAAATGATCTCGACATCGACGAGTT
CACCACCACCATGATGAAGCTGATGACGGACGGGCCGGACGAGGCCACGC
TGGAGCGCGGGCGGCGCGTGGTGGTGACGGAGGCATTCAAGAAGGCGGAC
ACCGACCACTCGGGCTCCTTGGACGTGGACGAGGTGACAGCGCTGCTCAA
GGAAGCGGACTACAGAATCCTGGACGCGGACGGAACAAATGATCTCGACA
TCGACGAGTTCACCACCACCATGATGAAGCTGATGACGGACGGGCCGGAC
GAGGCCACGCTGGAGCGCGGGCGGCGCGTGGTGGTGACGGAGGCATTCAA
GAAGGCGGACACCGACCACTCGGGCTCCTTGGACGTGGACGAGGTGACAG
CGCTGCTCAAGGAAGCGGAC
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