mRNA_F-distichus_contig105310.461.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105310.461.1
Unique NamemRNA_F-distichus_contig105310.461.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: D7FLI5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLI5_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 3.490e-36
Identity = 60/72 (83.33%), Postives = 64/72 (88.89%), Query Frame = 1
Query:    7 DWCVVVVGDKKGPTEYDVPGVIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            DWCVVVVGD+ GP EY+V GVIYLTP +QE LPYRI  +LPWNHFGRKNIGYLYAVHHGA VIYDVDDDNAL
Sbjct:   52 DWCVVVVGDQNGPAEYNVEGVIYLTPQDQEQLPYRIVPLLPWNHFGRKNIGYLYAVHHGATVIYDVDDDNAL 123          
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: A0A6H5JQ39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ39_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 9.070e-33
Identity = 56/74 (75.68%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 MSDWCVVVVGDKKGPTEYDVPGVIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            +  WCVVVVGDK GP EY V GV YLTP +Q+ALPYRI  +LPWNHFGRKN+GY+YA+ HGAKVIYDVDDDNAL
Sbjct:  103 LRGWCVVVVGDKNGPAEYHVTGVKYLTPGDQDALPYRITEILPWNHFGRKNVGYMYAIQHGAKVIYDVDDDNAL 176          
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: D8LCM9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCM9_ECTSI)

HSP 1 Score: 127 bits (319), Expect = 1.720e-32
Identity = 55/74 (74.32%), Postives = 64/74 (86.49%), Query Frame = 1
Query:    1 MSDWCVVVVGDKKGPTEYDVPGVIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            + +WCVVVVGDK GPTEY+V GV+ LTP +QEALPYRI  ++PWNH GRKNIGYLYA+HHGAKVIYDVDD + L
Sbjct:  113 LGEWCVVVVGDKDGPTEYNVVGVVLLTPSDQEALPYRITDLIPWNHVGRKNIGYLYAIHHGAKVIYDVDDAHVL 186          
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: W7TF50_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TF50_9STRA)

HSP 1 Score: 115 bits (289), Expect = 6.310e-32
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 MSDWCVVVVGDKKGPTEYDVPG--VIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            M +WCVVVVGDKK P  YD+P   +++L+P EQEALPY I  +L WNHFGRKNIG+LYA+HHGA++IYD DDDN L
Sbjct:    1 MKNWCVVVVGDKKSPPTYDIPSDNLVFLSPEEQEALPYHIIPLLRWNHFGRKNIGFLYAMHHGAEMIYDTDDDNIL 76          
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: W7SZI8_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7SZI8_9STRA)

HSP 1 Score: 119 bits (298), Expect = 1.190e-29
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 1
Query:    1 MSDWCVVVVGDKKGPTEYDVPG--VIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            M DWCVVVVGDKK P+ YD+    +IYL+P EQEALPY+I  +L WNHFGRKNIG+LYA+HHGA+VIYD DDDN L
Sbjct:  128 MKDWCVVVVGDKKSPSTYDIQSDTLIYLSPEEQEALPYQIIPLLKWNHFGRKNIGFLYAMHHGAEVIYDTDDDNIL 203          
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: A0A7S3YTT7_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3YTT7_9EUKA)

HSP 1 Score: 113 bits (282), Expect = 1.150e-28
Identity = 52/84 (61.90%), Postives = 63/84 (75.00%), Query Frame = 1
Query:    1 MSDWCVVVVGDKKGPTEYDV---------PG-VIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            + +WCVVVVGDKKGP  YD+         PG V+YLTP +QE LPY + + L WNHFGRKNIG+++A HHGAK+IYDVDDDN L
Sbjct:  187 LGNWCVVVVGDKKGPKSYDLGAMRNGTAYPGQVVYLTPEDQEKLPYALTNRLKWNHFGRKNIGFIFAAHHGAKMIYDVDDDNTL 270          
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: K8YW40_NANGC (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YW40_NANGC)

HSP 1 Score: 115 bits (289), Expect = 1.890e-28
Identity = 51/76 (67.11%), Postives = 62/76 (81.58%), Query Frame = 1
Query:    1 MSDWCVVVVGDKKGPTEYDVPG--VIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            M +WCVVVVGDKK P  YD+P   +++L+P EQEALPY I  +L WNHFGRKNIG+LYA+HHGA++IYD DDDN L
Sbjct:   14 MKNWCVVVVGDKKSPPTYDIPSDNLVFLSPEEQEALPYHIIPLLRWNHFGRKNIGFLYAMHHGAEMIYDTDDDNIL 89          
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: A0A4D9D524_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D524_9STRA)

HSP 1 Score: 112 bits (281), Expect = 4.230e-28
Identity = 50/76 (65.79%), Postives = 61/76 (80.26%), Query Frame = 1
Query:    1 MSDWCVVVVGDKKGPTEYDVPG--VIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            M DWCVVVVGD++ P+ YD+    +I+L P EQEALPY +  +L WNHFGRKNIG+LYA+HHGA+VIYD DDDN L
Sbjct:    1 MKDWCVVVVGDQQSPSTYDIQSDTLIFLGPEEQEALPYHVIPLLKWNHFGRKNIGFLYAMHHGAEVIYDTDDDNIL 76          
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: A0A7S3S1Z0_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3S1Z0_EMIHU)

HSP 1 Score: 112 bits (279), Expect = 4.680e-28
Identity = 47/74 (63.51%), Postives = 58/74 (78.38%), Query Frame = 1
Query:    1 MSDWCVVVVGDKKGPTEYDVPGVIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            +  WCVVV GDKKGP EY++ GV+YLTP  QEALP+   + L WNHFGRKN+G+LYA+ HGA+ +YD DDDN L
Sbjct:  111 LPSWCVVVAGDKKGPVEYNLSGVLYLTPAMQEALPFESKAELRWNHFGRKNLGFLYAIQHGARWVYDTDDDNEL 184          
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Match: UPI0014553AFF (probable glycosyltransferase STELLO2 n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI0014553AFF)

HSP 1 Score: 110 bits (274), Expect = 7.130e-27
Identity = 46/73 (63.01%), Postives = 56/73 (76.71%), Query Frame = 1
Query:    4 SDWCVVVVGDKKGPTEYDVPGVIYLTPMEQEALPYRIGSMLPWNHFGRKNIGYLYAVHHGAKVIYDVDDDNAL 222
            S WC+VVV DKKGP   D+P +++LT  EQ+   YRI  ++PWNHF RKNIGY+YA+ HGAKVIYD DDDN L
Sbjct:  110 SGWCMVVVADKKGPVSMDIPNIVHLTVAEQKNCRYRICQLIPWNHFSRKNIGYMYAIEHGAKVIYDTDDDNGL 182          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105310.461.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLI5_ECTSI3.490e-3683.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JQ39_9PHAE9.070e-3375.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCM9_ECTSI1.720e-3274.32Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TF50_9STRA6.310e-3267.11Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
W7SZI8_9STRA1.190e-2971.05Uncharacterized protein n=1 Tax=Nannochloropsis ga... [more]
A0A7S3YTT7_9EUKA1.150e-2861.90Hypothetical protein (Fragment) n=1 Tax=Lotharella... [more]
K8YW40_NANGC1.890e-2867.11Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A4D9D524_9STRA4.230e-2865.79Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S3S1Z0_EMIHU4.680e-2863.51Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
UPI0014553AFF7.130e-2763.01probable glycosyltransferase STELLO2 n=1 Tax=Aster... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105310contigF-distichus_contig105310:528..1207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.6
Seed ortholog evalue9.6e-30
Seed eggNOG ortholog2880.D7FLI5
Hectar predicted targeting categoryother localisation
GOsGO:0000271,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005794,GO:0005802,GO:0005975,GO:0005976,GO:0006073,GO:0006109,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009250,GO:0009664,GO:0009832,GO:0009889,GO:0009987,GO:0010383,GO:0010556,GO:0010675,GO:0010962,GO:0010981,GO:0012505,GO:0016043,GO:0016051,GO:0019222,GO:0030243,GO:0030244,GO:0030312,GO:0031323,GO:0031326,GO:0031410,GO:0031982,GO:0031984,GO:0032881,GO:0032885,GO:0032950,GO:0032951,GO:0033692,GO:0034637,GO:0034645,GO:0042546,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043255,GO:0044036,GO:0044038,GO:0044042,GO:0044085,GO:0044087,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044262,GO:0044264,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045229,GO:0050789,GO:0050794,GO:0051128,GO:0051273,GO:0051274,GO:0052324,GO:0052541,GO:0060255,GO:0065007,GO:0070589,GO:0070592,GO:0071554,GO:0071555,GO:0071669,GO:0071704,GO:0071840,GO:0071944,GO:0080090,GO:0097708,GO:0098791,GO:1901576,GO:1903338,GO:2000112,GO:2001006,GO:2001009
EggNOG free text desc.plant-type cell wall cellulose biosynthetic process
EggNOG OGs28KU8@1,2QTAG@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size222
Cds size222
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105310.461.1prot_F-distichus_contig105310.461.1Fucus distichus monoicouspolypeptideF-distichus_contig105310 528..1207 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928979.1294384-CDS-F-distichus_contig105310:527..5601622928979.1294384-CDS-F-distichus_contig105310:527..560Fucus distichus monoicousCDSF-distichus_contig105310 528..560 -
1690885089.2749693-CDS-F-distichus_contig105310:527..5601690885089.2749693-CDS-F-distichus_contig105310:527..560Fucus distichus monoicousCDSF-distichus_contig105310 528..560 -
1622928979.175164-CDS-F-distichus_contig105310:837..9861622928979.175164-CDS-F-distichus_contig105310:837..986Fucus distichus monoicousCDSF-distichus_contig105310 838..986 -
1690885089.2867656-CDS-F-distichus_contig105310:837..9861690885089.2867656-CDS-F-distichus_contig105310:837..986Fucus distichus monoicousCDSF-distichus_contig105310 838..986 -
1622928979.1954038-CDS-F-distichus_contig105310:1167..12071622928979.1954038-CDS-F-distichus_contig105310:1167..1207Fucus distichus monoicousCDSF-distichus_contig105310 1168..1207 -
1690885089.2945118-CDS-F-distichus_contig105310:1167..12071690885089.2945118-CDS-F-distichus_contig105310:1167..1207Fucus distichus monoicousCDSF-distichus_contig105310 1168..1207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105310.461.1

>prot_F-distichus_contig105310.461.1 ID=prot_F-distichus_contig105310.461.1|Name=mRNA_F-distichus_contig105310.461.1|organism=Fucus distichus monoicous|type=polypeptide|length=74bp
MSDWCVVVVGDKKGPTEYDVPGVIYLTPMEQEALPYRIGSMLPWNHFGRK
NIGYLYAVHHGAKVIYDVDDDNAL
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mRNA from alignment at F-distichus_contig105310:528..1207-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105310.461.1 ID=mRNA_F-distichus_contig105310.461.1|Name=mRNA_F-distichus_contig105310.461.1|organism=Fucus distichus monoicous|type=mRNA|length=680bp|location=Sequence derived from alignment at F-distichus_contig105310:528..1207- (Fucus distichus monoicous)
ATGAGCGATTGGTGCGTCGTGGTGGTGGGCGATAAGAAGGGTGAGTCAAG TCAGCTCTAACGCGGCGGGGCTGAGGGTTGCTCAGCTCCCTATCATCCCG TCTCGGTGTGTAGATCTCTTGAAACCCGCGCCGCGTTATAGCTGGTACGG AGGCATTTTACTTACTATGTGTGTCACTTGCATCGTGCAACCGACCCCGG ATTATGTCGGGCCGCAAGCAGGTCCTACGGAATACGATGTGCCGGGGGTT ATCTACCTCACTCCGATGGAGCAGGAGGCACTGCCGTACCGGATAGGGAG TATGCTCCCTTGGAACCACTTCGGTCGAAAGAACATCGGGTACCTGTATG CAGTGCATCACGGGGCGAAGGTATGAACGGCATCACGATCGATTCGTCGG TATATTGATCACAGGCCTACGACTGTAACATGTAGCGGTTGGCCAGATCC TATCGATCGACGACTTGTGTCGGAACTCATTGCTTTTTTTATTTATATCG AGCATCTATACGAAGGATGTATCTCGAAGGCACCGCGAAGGCTTCTGTCG TGTCGTCCATAGCTTGTAGCCGGAACCGTTCAACCAGGGCCGCTCAAGAA ATCCTTTCCGCCGCCGCCTTCGCTGCCCCTCGTTCCGTCCTGTCCAGGTT ATCTACGATGTGGATGACGACAACGCGCTT
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Coding sequence (CDS) from alignment at F-distichus_contig105310:528..1207-

>mRNA_F-distichus_contig105310.461.1 ID=mRNA_F-distichus_contig105310.461.1|Name=mRNA_F-distichus_contig105310.461.1|organism=Fucus distichus monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at F-distichus_contig105310:528..1207- (Fucus distichus monoicous)
ATGAGCGATTGGTGCGTCGTGGTGGTGGGCGATAAGAAGGATGAGCGATT
GGTGCGTCGTGGTGGTGGGCGATAAGAAGGGTCCTACGGAATACGATGTG
CCGGGGGTTATCTACCTCACTCCGATGGAGCAGGAGGCACTGCCGTACCG
GATAGGGAGTATGCTCCCTTGGAACCACTTCGGTCGAAAGAACATCGGGT
ACCTGTATGCAGTGCATCACGGGGCGAAGGTCCTACGGAATACGATGTGC
CGGGGGTTATCTACCTCACTCCGATGGAGCAGGAGGCACTGCCGTACCGG
ATAGGGAGTATGCTCCCTTGGAACCACTTCGGTCGAAAGAACATCGGGTA
CCTGTATGCAGTGCATCACGGGGCGAAGGTTATCTACGATGTGGATGACG
ACAACGCGCTTGTTATCTACGATGTGGATGACGACAACGCGCTT
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