mRNA_F-distichus_contig1052.454.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig1052.454.1 vs. uniprot
Match: D7FNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNI5_ECTSI) HSP 1 Score: 835 bits (2158), Expect = 1.440e-274 Identity = 647/1634 (39.60%), Postives = 791/1634 (48.41%), Query Frame = 1
Query: 1 QVERTVCSVSEKLLMHGKSAEASKLLLLASRLSGKPMRLDGQHI----VKPKAAALDPTSPLLEHPYAAISFLLALSGSRSSSAREEPFLELDKSAENSSQVYAEGVDGR------------------------------LADLAGDSSRLWSSDSEDEENVGEGKKRDGPSHVEVGRWQLDGAMASQSDGLDEDAD---TREWLQAFESEANSESDGSSAHTDGERIP-GAFYTSGIVRAA-------TEDSLPSSQILA--------QQPPQSGV---HRTQRTTSPKRPVLRHKYGARCFGADIRSLAGV--ASDGT--GLKFVRPCQTLEAFQN-ALTARFSRRRSVPEACLVRDTLHMLQGLPGDTFVQMGRGDS--------------------GAGF--------------------ESRMRK----FCLSAMAERDIAVASLSPVALFSALEAFARVGNVAEYLRAFVADAEELPTAVATGTAE------ERKHGYATQAFAACHCLSDGSEQNGGGSGETLLGLLSLLQPEFESLKLIAREVEAGAGSWFTRTSELGTRT------------------GNSTGGLREQTGRLLSALHDSVVAGALLG---------RTVRDLPGFEAGARAPRRRGWLLHAFCEVLAPYLDLIDAWITEGRIQDPHGELFFSQTGGDRSYSTAFVTCTHACCQSHHIGSYGLAFDSYGGGEYLDTDPVVHVWDTGIVIHSKALPHFFAPLASAVTLAGQDVSLMRKVRALVALRGDVTAGSPGAPTRC-------------SRSSWIGPGLGRGVERLPLATQLFESLGKLAARVRQSRRNADVESVLIDTEEVQKQRGLGWLDDGEDAARATGDSRVTSGTMKMTRQSVARRTETTRGYDENDEEKGGESSGEQDKDRGNGIDESTVDEPNGVAVPTEEESKGHQSEQIAKAVVPDAFNFGRAEFGPSSRGATAMAARIMSMARGHASASLSLTGQRNVEVCPPGERAHSTVNRINARNVTDVDHQGEGFFWGTAQLALTPDATLQQSLHLALAPPCLSILRGNASEALQGRASDAMPIDVDVGSKSLDGGKAKYRNNDGV----RDEKLSAKAADDVAAVLPPSVVLERCLLSPLREHCRLASSSCLGVFVQELGIIRLAGVMRGVYLSLSGAATRSPLFHFRETLFRLLESFPSRAEADAHGDGR----AVAEFNGAVVRDVAAFLQDGPRLTSILLSSLTVEEMDE--------DAIHCAVEEEGIGAICKR------LRSPLVGGDRPLAEHFVVQSRPSMVREWR---SGGTQRSFRRAIASSVPAAAVGGDEGEAESIFPLTANGRFVDLRVFSCLQLQCHLPWPFSVALPPRSMDKYTRILGLILRLDFTVHVLEESHMMHRHEKRHQSIVAPELRGLDRRHLQQTRLAAFLSVVKAVRRYVVRQASIMPWSEFIARVPRCGSLRSFIRLHEAYLDLIRERCFLLPHTRQTLAYLLDVLQAGVAFSKRYDEYITGLKLTIDIDSIRNSPG------------------EDLAEETGMHARDLTRESLGSLDELWEIMLSALDLVIPLLKEMVRSRSGVHVKELLVDLDFNGFFETQKAWRVAHLPPR 4320
+VE +CS +EK +MHGK+ A++LLLLAS L+GKPMR++G + V AAA SP LEHPYAA++ LALSGS+ +A E +E D+ ++ AE V+G LA GDSSRLWSSDS++ + G + VG + S + + ED D TREWLQAFE DGE P A YT+G + A E++ S+Q++ P +GV + +R + P P RH YG+ C GADIRSL G A DG G F+RPCQTLEA Q A RRRS+PEA +VR LHML GL GD FV+ RGD+ G G +R R+ F LS A D+AVASLSP AL L RVG+ EYLRAFV DAE + A A R HG + S GSGET++GLLSLL+PE ESL+L + VE GAG W G S GL E+TGRLLS LHD++V+ AL+G R V D ARAPRRRGWLLH FCEVLAPYL L+D+WITEGR+ DPHGELFFS+ GG + +IG + + G DPVVHVWDTGIV+HSKALP F APLA AV LAGQD+SLMR+VRALV SR + G G E LA L ESL +LA RVR++ G D +D A TG SG AV P SS G L G ++E G + + GFF GTAQLAL P A Q+ LH +LAPP RG S A+ GR + I + + GG + R G A D+VA LPP++VLE CLL LREHCRLASSSCL VF ELGI+ +AGV+R VYLS GA T +PL FR LF LL + P + +G VVRDV AFLQDG RLT++L SSL + ++E D G A+ LRSP+ G DRPL EHF+V+ RP +VREWR +GG +R R+ +SS + D G+ + FPL +GR VDLR FSCLQL+C LPWP SVALPPRSMDKY+R LGL+L+L+FT HVLEE+H+ H H +R +S EL D+RHLQ RL AFL V +AVR Y QA + PW+ F AR+P C SLRSF+RLHEAYLDLI ERCFLLP TRQTLAYLLD LQAG+AFS+RY EY+ + +D S R+S G ED + RESL LDELW+ ++SAL VIPLLKEMVRSRS V+V ELL +L+FN FFE Q+ WRV PR
Sbjct: 57 KVEAAICSFAEKFVMHGKTVNATRLLLLASSLTGKPMRVEGHRMDTGGVNKTAAA----SPPLEHPYAALALALALSGSQRWAAAREAEVEGDEKEGDTPD--AESVEGXXXXXXXXXXXXXXPARDEEEGEERQGAAELLAGFEGDSSRLWSSDSDEGSELEGGPEEQEEEEDGVGSF-------SSALPVVEDVDEGGTREWLQAFED-------------DGEGSPRAAGYTAGEIEAERSGRWGKVENNGASTQLVEPLAPSYPPSSSPNTGVDSKNLARRASHP--PAARHNYGSPCIGADIRSLGGRRGAHDGDVHGSSFLRPCQTLEACQTRGGKAVGRRRRSIPEAEVVRAALHMLAGLSGDIFVRRVRGDASDTRGEQLSQQERHRAVGARGTGXXXXXXXXXXXXXDRWDVVSGSARARRGQEWFSLSESAASDLAVASLSPEALAGVLGDLVRVGSTVEYLRAFVTDAEGSASVAAEAAAAVLRQRVPRGHGEGRDT-----AVEHDSSSTSSGSGETIVGLLSLLRPEAESLELTRQLVEDGAGWWXXXXXXXXXXXXXXXXXXXXXTGAERHVGGGSGAGLHERTGRLLSVLHDALVSSALVGIGPTPPEKSRGVGD-----TAARAPRRRGWLLHMFCEVLAPYLRLVDSWITEGRLLDPHGELFFSRIGGXXXXXXXXXXXXXXXXXADNIGGHNRQATAVG------RDPVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISLMRRVRALVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRKARTGAMASPGSETFSLAETLSESLRRLAERVRRA-----------------NDAGPSRKKDQDDGAGCTGRGDRRSGXXXX---------------------------------------------------------XXXXXXXXXAAVSP-----------VSSSG---------------------LDGIIDLEESREGAKQDDEL----------------GFFGGTAQLALKPGAMFQRPLHPSLAPPSPPSTRG-PSPAVGGRRIASCFI-AGMSRRGRGGGSSDVRGAGGYPXXXXXXXXEATMEDEVAKALPPTMVLETCLLGALREHCRLASSSCLSVFADELGIVSIAGVLRDVYLSPGGAKTDAPLSRFRGVLFGLLGALPLTTAXXXXXXXXXSPAGLLMLDGLVVRDVPAFLQDGSRLTALLQSSLAMSGVEEGCGGGRRRDTSGAVGSSAGGPAVGPGKDSGGWLRSPVAGSDRPLLEHFLVECRPEVVREWRREGAGGQRRGCRQRASSSAVNESAVADGGDGCAAFPLARDGRCVDLRAFSCLQLECRLPWPISVALPPRSMDKYSRTLGLLLKLEFTNHVLEEAHVFHSHAQRDRSSSEGEL---DKRHLQHCRLFAFLRVARAVRSYAFTQALVKPWAAFEARLPLCDSLRSFVRLHEAYLDLILERCFLLPRTRQTLAYLLDALQAGIAFSQRYGEYV----IQLDDRSGRSSDGASETNSGFTQGPSAVRGEEDGGGNXXXXXXEACRESLKKLDELWDDLVSALGFVIPLLKEMVRSRSAVYVNELLTELEFNHFFERQETWRVERRAPR 1515
BLAST of mRNA_F-distichus_contig1052.454.1 vs. uniprot
Match: A0A6H5L6D8_9PHAE (GCP_N_terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D8_9PHAE) HSP 1 Score: 534 bits (1375), Expect = 1.420e-160 Identity = 519/1486 (34.93%), Postives = 656/1486 (44.15%), Query Frame = 1
Query: 1 QVERTVCSVSEKLLMHGKSAEASKLLLLASRLSGKPMRLDGQHI----VKPKAAALDPTSPLLEHPYAAISFLLALSGSRSSSAREEPFLELDKSAENSSQVYA----------------------EGVDGRLADLAGDSSRLWSSDSEDEENVGEGKKRDGPSHVEVGRWQLDGAMASQSDGLDEDAD---TREWLQAFES--EANSESDGSSA-HTDGERIP--GAFYTSGIVRAATEDSLPSSQILAQQPPQSGV---HRTQRTTSPKRPVLRHKYGARCFGADIRSLAGV--ASDGT--GLKFVRPCQTLEAFQN-ALTARFSRRRSVPEACLVRDTLHMLQGLPGDTFVQMGRGDS----------------------------GAGFESRMRK----------------FCLSAMAERDIAVASLSPVALFSALEAFARVGNVAEYLRAFVADAEELPTAVAT----------------------------GTAEER--KHGYATQAFAAC---HCLSDGS-----------EQNGGG-----------------SGETLLGLLSLLQPEFESLKLIAREVEAGAGSWFT-----------------RTSELGTRT---GNSTGGLREQTGRLLSALHDSVVAGALLG---------RTVRDLPGFEAGARAPRRRGWLLHAFCEVLAPYLDLIDAWITEGRIQDPHGELFFSQTGGDRSYSTAFVTCTHACCQ-SHHIGSYGLAFDSYGGGEYLDTDPVVHVWDTGIVIHSKALPHFFAPLASAVTLAGQDVSLMRKVRALVALRGDVTAGSPGAPTRC------------SRSSWIGPGLGRGVERLPLATQLFESLGKLAARVRQSR-----RNADVESVLIDTEEVQKQR-------------------------GLGWLDDGEDAARAT-GDSRVTSGT-MKMTRQSVARRTETTRGYDENDEEKGGESSGEQDKDRGNGIDESTVDEPNGVAVPTEEESKGHQSEQIAKAVVPDAFNFGRAEFGPSSRGATAMAARIMSMARGHASASLSLTGQRNVEVCPPGERAHSTVNRINARNVTDVDHQGE----GFFWGTAQLALTPDATLQQSLHLALAPPCLSILRGNASEALQGRASDAM---PIDVDVGSKSLDGGKAKYRNNDGVRDEKLSAKAADDVAAVLPPSVVLERCLLSPLREHCRLASSSCLGVFVQELGIIRLAGVMRGVYLSLSGAATRSPLFHFRETLFRLLESFPSRAEADAHGDGRA----VAEFNGAVVRDVAAFLQ--------------------------------------------------DGPRLTSILLSSLTVEEMDED-----------AIHCAVEEEGIGAICKR---LRSPLVGGDRPLAEHFVVQSRPSMVREWR---SGGTQRSFRRAIASSVPAAAVGGDEGEAESIFPLTANGRFVDLRVFSCLQ 3561
+VE +CSV+EK +MHGK+ A++LLLLAS L+GKPMR++G + V AAA SP LEHPYAA++ LALSGS+ +A +E +E D+ ++ + EG LA GDSSRLWSSDS+ GP E G+++S G+ ED D TREWLQAFE E + +DG +A + ER G +G E PS + P +GV + T+R + P P RH YGA C GADIR+L G A DG G F+RPCQTLEA Q A RRRS+PEA +VR LHML GL GD FV+ GD+ G G R+ F LS A D+AVASLSP AL LE RVG+ AEYLRAFVADAE + A G +ER KHG TQAF AC H S Q G G SGET++GLLSLL+PE ESL+L + VE GAG W RT + G S GL E+TGRLLS LHD++V+ AL+G R V D A APRRRGWLLH FCEVLAPYL L+D+WITEGR+ DPHGELFFS+ GG + +IG + + GG DPVVHVWDTGIV+HSKALP F APLA AV LAGQD+SLMR+VRALV R + G G E LA L ESL +LA RVR++ R D + T + R GLG + D E++ GD R ++ T + S A E ++ E++++ G+ +V P G V T + S G + V D G + FG G A + + LT + + +V + +QG+ GFF GTAQLAL P A Q+ LH +LAPP R S A+ GR + + I E+ A D+VA LPP++VLE CLL LREHCRLASSSCL VF ELG + +AGV+R VYLS GA T +PL FR LF LL P + + +G VVRDV AFLQ DG RLT++L SSL + ++E A+ + +G+ LRSP+ G DRPL EHF+V+ RP +VREWR +GG +R + +SS A D G+ + FPL +GR VDL+ FSCLQ
Sbjct: 57 KVEAAICSVAEKFVMHGKTVNATRLLLLASSLTGKPMRVEGHRMDTGGVNKAAAA----SPPLEHPYAALALALALSGSQRWAAAKEAEVEGDEREGDTPDAESIEGGGCGGSGRSARDEEXXEEREGAAELLAGFEGDSSRLWSSDSDXXXXX-----XXGPEEQEQEEEDGVGSLSSALPGV-EDVDEGGTREWLQAFEDDGEGSPRADGCTAGEIETERFGHRGKVENNGASTQLAEPLAPSYSPPSS--PNTGVDSKNLTRRASHP--PAARHNYGAPCIGADIRNLGGRRGARDGDVDGASFLRPCQTLEACQTRGGEAVGRRRRSIPEAEVVRAALHMLAGLSGDIFVRRVNGDASDTGGEQLPQKGRHGAAGTRGTGXXXRTGGGSSGPSRRWGVVTGSASARRGQEWFSLSESAASDLAVASLSPEALAGVLEDLLRVGSTAEYLRAFVADAEGSASVAAEAXXXXXXXXXXXXXXXXXXXXXXASKSYGRGKERGPKHGLTTQAFVACVRRHLESFEDTVARRDRWLYRRQQGQGXXXXXXXXXXXXXXXXXSGETIVGLLSLLRPEAESLELTRQLVEDGAGWWVATPXXXXEGVWPRNRRRRRTGDTNAERHVGGGSGAGLHERTGRLLSVLHDALVSSALVGIGPTPPEKSRGVGDTE-----ALAPRRRGWLLHVFCEVLAPYLRLVDSWITEGRLLDPHGELFFSRIGGXXXXXXXXXXXXXXXXXXADNIGGHNRQATAVGG------DPVVHVWDTGIVLHSKALPPFLAPLAPAVALAGQDISLMRRVRALVGXXXXXXXXXXXXXXXXXXXXXXXXXXXXERKAGTGAMSSPGSETFSLAETLSESLRQLAGRVRRANDAGPSRKKDQDDGAGCTGRGRGDRRSGGXXXXXXXXXXXXXAVSPVSSSGLGGIVDLEESRGGKHGDGRNSASTESEEGATSPAXXXXXXXXXXXXGTEAEATAATEKNRESGS----VSVAAPEGEDV-TNDGSDGGDCSGVGVGGVRDRRT-GSSGFGDGGXGGPATSPDV-------------LTEEASADVGGDXXXXXXXXXXXXXXXAAEGANQGDDPELGFFGGTAQLALKPGAMFQRPLHPSLAPPSPPSTR-QPSPAVGGRRTASCFITGISHXXXXXXXXXXXXXXXXXXXXXXEEDEATMEDEVAKALPPTMVLETCLLGALREHCRLASSSCLAVFADELGTVSIAGVLRDVYLSPGGAKTDAPLSRFRGVLFGLLGGLPLTTAXXXXXXXXSSPAGLLVLDGLVVRDVPAFLQMFSERWMSFPFLFTRAKHVFRLENFLTPSTFGIVVVPPSIAYFPFAPVLQDGSRLTALLQSSLAMSRVEEGCGGGRRRDTRAAVGGSAGGPAVGSDKDSGGWLRSPVAGSDRPLLEHFLVECRPEVVREWRREGAGGQRRGVGQRASSSGAEAPAVADGGDGCAAFPLARDGRCVDLQAFSCLQ 1497
BLAST of mRNA_F-distichus_contig1052.454.1 vs. uniprot
Match: A0A6H5L542_9PHAE (GCP_C_terminal domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L542_9PHAE) HSP 1 Score: 211 bits (536), Expect = 2.320e-58 Identity = 119/210 (56.67%), Postives = 136/210 (64.76%), Query Frame = 1
Query: 3745 LDRRHLQQTRLAAFLSVVKAVRRYVVRQASIMPWSEFIARVPRCGSLRSFIRLHEAYLDLIRERCFLLPHTRQTLAYLLDVLQAGVAFSKRYDEYITGLKLTIDIDSIRNSPG------------------EDLAEETGMHARDLTRESLGSLDELWEIMLSALDLVIPLLKEMVRSRSGVHVKELLVDLDFNGFFETQKAWRVAHLPPR 4320
LD+RHLQ RL AFL V +AVR Y V QA + PW+ AR+P C SLRSFIRLHEAYLDLI ERCFLLP TRQTLAYLLD LQAG+AFS+RY EY+ + D S R+S G ED G + RESL LDELW ++SAL VIPLLKEMVRSRS V+V ELL +L+FN FFE Q+ WRV PR
Sbjct: 16 LDKRHLQHCRLFAFLRVARAVRNYAVTQALVKPWAALEARLPLCDSLRSFIRLHEAYLDLILERCFLLPRTRQTLAYLLDALQAGIAFSQRYGEYV----IQFDDRSGRSSDGAPETNGGFTQGPSAAREEEDGGGNRGEGRDEACRESLKKLDELWHDLVSALGFVIPLLKEMVRSRSAVYVNELLTELEFNHFFERQETWRVERRAPR 221 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1052.454.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig1052.454.1 >prot_F-distichus_contig1052.454.1 ID=prot_F-distichus_contig1052.454.1|Name=mRNA_F-distichus_contig1052.454.1|organism=Fucus distichus monoicous|type=polypeptide|length=1448bp QVERTVCSVSEKLLMHGKSAEASKLLLLASRLSGKPMRLDGQHIVKPKAAback to top mRNA from alignment at F-distichus_contig1052:2797..13919- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig1052.454.1 ID=mRNA_F-distichus_contig1052.454.1|Name=mRNA_F-distichus_contig1052.454.1|organism=Fucus distichus monoicous|type=mRNA|length=11123bp|location=Sequence derived from alignment at F-distichus_contig1052:2797..13919- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig1052:2797..13919- >mRNA_F-distichus_contig1052.454.1 ID=mRNA_F-distichus_contig1052.454.1|Name=mRNA_F-distichus_contig1052.454.1|organism=Fucus distichus monoicous|type=CDS|length=8688bp|location=Sequence derived from alignment at F-distichus_contig1052:2797..13919- (Fucus distichus monoicous)back to top |