mRNA_F-distichus_contig105159.453.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105159.453.1
Unique NamemRNA_F-distichus_contig105159.453.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105159.453.1 vs. uniprot
Match: A0A6H5JG00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG00_9PHAE)

HSP 1 Score: 107 bits (266), Expect = 2.240e-25
Identity = 45/66 (68.18%), Postives = 57/66 (86.36%), Query Frame = 1 
Query:   10 AEVAFKQSIQEDPSLSDAWNGLGA-VSRDPLMSQHCWVRAVQLGHNPSAWANLGMLYIRWGLDEQV 204
            AE AF++S++ DP+ S+AWNGLGA +S+ PL+ QHCWVR+VQL HNPSAWANLGMLY+RWG+D Q 
Sbjct:  448 AEEAFRRSVEADPAYSEAWNGLGATMSQKPLVQQHCWVRSVQLEHNPSAWANLGMLYVRWGMDIQA 513
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BLAST of mRNA_F-distichus_contig105159.453.1 vs. uniprot
Match: D7G059_ECTSI (Similar to Tetratricopeptide repeat protein 37 (TPR repeat protein 37) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G059_ECTSI)

HSP 1 Score: 105 bits (262), Expect = 7.790e-25
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 1 
Query:   10 AEVAFKQSIQEDPSLSDAWNGLGA-VSRDPLMSQHCWVRAVQLGHNPSAWANLGMLYIRWGLDEQV 204
            AE AF++S++ DP+ S+AWNGLGA +S  PL+ QHCWVR+VQL HNPSAWANLGMLY+RWG+D Q 
Sbjct:  969 AEEAFRRSVEADPAYSEAWNGLGATMSGRPLVQQHCWVRSVQLEHNPSAWANLGMLYVRWGMDIQA 1034
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BLAST of mRNA_F-distichus_contig105159.453.1 vs. uniprot
Match: A0A484DT53_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DT53_BRELC)

HSP 1 Score: 70.5 bits (171), Expect = 1.610e-12
Identity = 28/57 (49.12%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   10 AEVAFKQSIQEDPSLSDAWNGLGAVSRDPLMSQHCWVRAVQLGHNPSAWANLGMLYI 180
            A   FK ++++DPS + AWNGL  VS++ L+ Q CW RA+Q G++ ++WANLGM Y+
Sbjct:  892 ASTNFKLALKKDPSCALAWNGLALVSKNVLVKQFCWARAIQSGNSDASWANLGMFYL 948
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BLAST of mRNA_F-distichus_contig105159.453.1 vs. uniprot
Match: A0A293MWB5_ORNER (Tetratricopeptide repeat protein 37 (Fragment) n=1 Tax=Ornithodoros erraticus TaxID=265619 RepID=A0A293MWB5_ORNER)

HSP 1 Score: 50.8 bits (120), Expect = 1.350e-5
Identity = 25/63 (39.68%), Postives = 42/63 (66.67%), Query Frame = 1 
Query:   10 AEVAFKQSIQEDPSLSDAWNGLGAVS-----RDPLMSQHCWVRAVQLGH-NPSAWANLGMLYI 180
            A V+ ++++  +P+   AWN LG V+     ++  ++QHC +++VQL   NP+AWANLG LY+
Sbjct:  484 ALVSVQKAVSLNPADPAAWNMLGVVALAKDIKNGALAQHCLIKSVQLESCNPTAWANLGALYL 546
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105159.453.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JG00_9PHAE2.240e-2568.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G059_ECTSI7.790e-2568.18Similar to Tetratricopeptide repeat protein 37 (TP... [more]
A0A484DT53_BRELC1.610e-1249.12Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
A0A293MWB5_ORNER1.350e-539.68Tetratricopeptide repeat protein 37 (Fragment) n=1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105159contigF-distichus_contig105159:394..606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.6
Seed ortholog evalue3.9e-20
Seed eggNOG ortholog2880.D7G059
Preferred nameTTC37
KEGG koko:K12600
KEGG Pathwayko03018,map03018
KEGG ModuleM00392
Hectar predicted targeting categoryother localisation
GOsGO:0000184,GO:0000288,GO:0000291,GO:0000785,GO:0000956,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010468,GO:0010605,GO:0010608,GO:0010629,GO:0016070,GO:0016071,GO:0016441,GO:0016458,GO:0019222,GO:0019439,GO:0031974,GO:0031981,GO:0032991,GO:0034427,GO:0034641,GO:0034655,GO:0035327,GO:0040029,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043928,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046700,GO:0048519,GO:0050789,GO:0055087,GO:0060255,GO:0065007,GO:0070013,GO:0070478,GO:0070481,GO:0071704,GO:0090304,GO:1901360,GO:1901361,GO:1901575
EggNOG free text desc.exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
EggNOG OGsKOG1127@1,KOG1127@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03019
Exons1
Model size213
Cds size213
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928977.9962473-CDS-F-distichus_contig105159:393..6061622928977.9962473-CDS-F-distichus_contig105159:393..606Fucus distichus monoicousCDSF-distichus_contig105159 394..606 +
1690885087.561142-CDS-F-distichus_contig105159:393..6061690885087.561142-CDS-F-distichus_contig105159:393..606Fucus distichus monoicousCDSF-distichus_contig105159 394..606 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105159.453.1prot_F-distichus_contig105159.453.1Fucus distichus monoicouspolypeptideF-distichus_contig105159 394..606 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105159.453.1

>prot_F-distichus_contig105159.453.1 ID=prot_F-distichus_contig105159.453.1|Name=mRNA_F-distichus_contig105159.453.1|organism=Fucus distichus monoicous|type=polypeptide|length=71bp
LSLAEVAFKQSIQEDPSLSDAWNGLGAVSRDPLMSQHCWVRAVQLGHNPS
AWANLGMLYIRWGLDEQVTG*
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mRNA from alignment at F-distichus_contig105159:394..606+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105159.453.1 ID=mRNA_F-distichus_contig105159.453.1|Name=mRNA_F-distichus_contig105159.453.1|organism=Fucus distichus monoicous|type=mRNA|length=213bp|location=Sequence derived from alignment at F-distichus_contig105159:394..606+ (Fucus distichus monoicous)
CTCAGCCTGGCAGAGGTAGCCTTCAAGCAGTCCATCCAGGAAGACCCGTC
GCTTTCTGACGCTTGGAACGGGCTGGGCGCGGTGTCGAGGGATCCCCTCA
TGAGCCAACACTGCTGGGTGCGCGCCGTGCAGCTGGGGCACAACCCCAGC
GCGTGGGCTAACCTCGGCATGCTCTACATCCGCTGGGGGCTGGACGAGCA
GGTGACTGGTTAG
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Coding sequence (CDS) from alignment at F-distichus_contig105159:394..606+

>mRNA_F-distichus_contig105159.453.1 ID=mRNA_F-distichus_contig105159.453.1|Name=mRNA_F-distichus_contig105159.453.1|organism=Fucus distichus monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at F-distichus_contig105159:394..606+ (Fucus distichus monoicous)
CTCAGCCTGGCAGAGGTAGCCTTCAAGCAGTCCATCCAGGAAGACCCGTC
GCTTTCTGACGCTTGGAACGGGCTGGGCGCGGTGTCGAGGGATCCCCTCA
TGAGCCAACACTGCTGGGTGCGCGCCGTGCAGCTGGGGCACAACCCCAGC
GCGTGGGCTAACCTCGGCATGCTCTACATCCGCTGGGGGCTGGACGAGCA
GGTGACTGGTTAGCTCAGCCTGGCAGAGGTAGCCTTCAAGCAGTCCATCC
AGGAAGACCCGTCGCTTTCTGACGCTTGGAACGGGCTGGGCGCGGTGTCG
AGGGATCCCCTCATGAGCCAACACTGCTGGGTGCGCGCCGTGCAGCTGGG
GCACAACCCCAGCGCGTGGGCTAACCTCGGCATGCTCTACATCCGCTGGG
GGCTGGACGAGCAGGTGACTGGTTAG
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