mRNA_F-distichus_contig105158.452.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig105158.452.1
Unique NamemRNA_F-distichus_contig105158.452.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig105158.452.1 vs. uniprot
Match: D8LBW9_ECTSI (Novel cap binding protein nCBP n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBW9_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 4.440e-8
Identity = 27/32 (84.38%), Postives = 30/32 (93.75%), Query Frame = 1 
Query:   85 SEDVISVWNRSASNTESIEKIREAVKRLIKIP 180
            SEDVISVWNRSASNTE IEKIR+ VKRL++IP
Sbjct:  218 SEDVISVWNRSASNTEGIEKIRDTVKRLLQIP 249
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig105158.452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBW9_ECTSI4.440e-884.38Novel cap binding protein nCBP n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig105158contigF-distichus_contig105158:4..189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionnovel cap binding protein nCBP
Ec32 orthologEc-20_003570.2
Exons1
Model size186
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928977.8919342-CDS-F-distichus_contig105158:3..1891622928977.8919342-CDS-F-distichus_contig105158:3..189Fucus distichus monoicousCDSF-distichus_contig105158 4..189 +
1690885087.546791-CDS-F-distichus_contig105158:3..1891690885087.546791-CDS-F-distichus_contig105158:3..189Fucus distichus monoicousCDSF-distichus_contig105158 4..189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig105158.452.1prot_F-distichus_contig105158.452.1Fucus distichus monoicouspolypeptideF-distichus_contig105158 4..189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig105158.452.1

>prot_F-distichus_contig105158.452.1 ID=prot_F-distichus_contig105158.452.1|Name=mRNA_F-distichus_contig105158.452.1|organism=Fucus distichus monoicous|type=polypeptide|length=62bp
PPHTAVPSVSLFGDTEWPVSWTGNCLSRSEDVISVWNRSASNTESIEKIR
EAVKRLIKIPPT
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mRNA from alignment at F-distichus_contig105158:4..189+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig105158.452.1 ID=mRNA_F-distichus_contig105158.452.1|Name=mRNA_F-distichus_contig105158.452.1|organism=Fucus distichus monoicous|type=mRNA|length=186bp|location=Sequence derived from alignment at F-distichus_contig105158:4..189+ (Fucus distichus monoicous)
CCCCCGCATACTGCCGTACCGTCTGTGTCTCTTTTCGGGGACACGGAATG
GCCTGTGTCTTGGACGGGTAACTGTTTGTCTCGCAGCGAGGACGTCATCT
CGGTCTGGAATCGGTCAGCCTCCAACACTGAGAGCATCGAAAAGATACGG
GAGGCCGTGAAACGCCTTATAAAGATCCCTCCCACC
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Coding sequence (CDS) from alignment at F-distichus_contig105158:4..189+

>mRNA_F-distichus_contig105158.452.1 ID=mRNA_F-distichus_contig105158.452.1|Name=mRNA_F-distichus_contig105158.452.1|organism=Fucus distichus monoicous|type=CDS|length=372bp|location=Sequence derived from alignment at F-distichus_contig105158:4..189+ (Fucus distichus monoicous)
CCCCCGCATACTGCCGTACCGTCTGTGTCTCTTTTCGGGGACACGGAATG
GCCTGTGTCTTGGACGGGTAACTGTTTGTCTCGCAGCGAGGACGTCATCT
CGGTCTGGAATCGGTCAGCCTCCAACACTGAGAGCATCGAAAAGATACGG
GAGGCCGTGAAACGCCTTATAAAGATCCCTCCCACCCCCCCGCATACTGC
CGTACCGTCTGTGTCTCTTTTCGGGGACACGGAATGGCCTGTGTCTTGGA
CGGGTAACTGTTTGTCTCGCAGCGAGGACGTCATCTCGGTCTGGAATCGG
TCAGCCTCCAACACTGAGAGCATCGAAAAGATACGGGAGGCCGTGAAACG
CCTTATAAAGATCCCTCCCACC
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