mRNA_F-distichus_contig10513.450.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10513.450.1
Unique NamemRNA_F-distichus_contig10513.450.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10513.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10513contigF-distichus_contig10513:47..1939 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size379
Cds size378
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10513.450.1prot_F-distichus_contig10513.450.1Fucus distichus monoicouspolypeptideF-distichus_contig10513 48..1939 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928972.4266813-CDS-F-distichus_contig10513:47..1521622928972.4266813-CDS-F-distichus_contig10513:47..152Fucus distichus monoicousCDSF-distichus_contig10513 48..152 -
1690885087.3777814-CDS-F-distichus_contig10513:47..1521690885087.3777814-CDS-F-distichus_contig10513:47..152Fucus distichus monoicousCDSF-distichus_contig10513 48..152 -
1622928972.4369354-CDS-F-distichus_contig10513:1055..11811622928972.4369354-CDS-F-distichus_contig10513:1055..1181Fucus distichus monoicousCDSF-distichus_contig10513 1056..1181 -
1690885087.3927386-CDS-F-distichus_contig10513:1055..11811690885087.3927386-CDS-F-distichus_contig10513:1055..1181Fucus distichus monoicousCDSF-distichus_contig10513 1056..1181 -
1622928972.4479196-CDS-F-distichus_contig10513:1792..19391622928972.4479196-CDS-F-distichus_contig10513:1792..1939Fucus distichus monoicousCDSF-distichus_contig10513 1793..1939 -
1690885087.4049096-CDS-F-distichus_contig10513:1792..19391690885087.4049096-CDS-F-distichus_contig10513:1792..1939Fucus distichus monoicousCDSF-distichus_contig10513 1793..1939 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10513.450.1

>prot_F-distichus_contig10513.450.1 ID=prot_F-distichus_contig10513.450.1|Name=mRNA_F-distichus_contig10513.450.1|organism=Fucus distichus monoicous|type=polypeptide|length=126bp
YEYVPGRAAPERDGPVDHGGGGWKEAFPSVNLATGFTSDIGPPLHFVYQG
DVHWWEPASTAPHHTFRLWLGAANGLMCFELAETRHSSLPQVVAPLVTHQ
RALIPGAPPQFLCSRAIGGGPPIPLL
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mRNA from alignment at F-distichus_contig10513:47..1939-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10513.450.1 ID=mRNA_F-distichus_contig10513.450.1|Name=mRNA_F-distichus_contig10513.450.1|organism=Fucus distichus monoicous|type=mRNA|length=1893bp|location=Sequence derived from alignment at F-distichus_contig10513:47..1939- (Fucus distichus monoicous)
TACGAATACGTGCCTGGCCGCGCCGCCCCCGAACGCGATGGTCCAGTGGA
TCATGGGGGTGGAGGATGGAAGGAGGCGTTTCCGTCCGTGAATCTAGCGA
CGGGATTTACATCCGACATCGGACCCCCCTTACACTTTGTGTATCAGGTG
CAGTAAACCACAGTAAACATAACTAAAGTCGATTTTTTCTCTCCAATACA
GCATTCGCACCACTAGCCTCAAGCCTCCTGTCCGGCACTATACTCTTCCG
AGGATTCGCTGTGCGTTGTGATTTCGGTGGATAGCGTGGATTGTACGCAC
GCGCTTTTATTCTCGCCGCCGCAATCGAGGCACCCCAAGTATTATTTTTC
TCCACAGGAAGCGGTCGGTGAAAGGTTTGCCTGGCACTTCACGACAGAGG
GTTTTAGTGTACTTTTGGTGGTGTGGCAGTGAAAGACGAAACGAAGAACA
GGCGATGCACTTTGCGAAGTACGTAAGCAGCAGTCGCCCCCCCTACTCTC
CCTATAAGCTCCTGAAACGGAAAATACTAAATAGTACTATTTGTATGCAA
AAATCAATCAAACAGACGAGTGTCAAAATCTGCATGTCGTCGTCGCTTGC
GATGTGGATAGTATAATATACCAGTATAGCATACCTGCACATTGCAAATA
TACTGTACTGTAGTGTAGTATATCGTTGACCGACACTAATACGGTCGTTT
TTTTGCCGAGATCATACCGACATTATTGCCAACATTATTGCCGATATCAC
TGGCGCAGGGGGATGTTCACTGGTGGGAACCGGCGTCCACGGCTCCTCAC
CATACATTTCGTCTTTGGCTTGGGGCGGCAAATGGCCTGATGTGCTTCGA
GTTGGCGGAGACGCGGCACTCCTCGCTTCCTCAGGCGAGTTCTCTTTCTT
GTGGGTTCATCGACAGAGCCCTTCCGCTCCTGTTGGAATCCGCTAAAAGA
ACTTGCTGAAATAATCTAAAATCGAAATTATCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCAAACTCTCCTCTTTCTCTTTTTTTTTTTTTCCCCTAC
CANNNNNNNNNNCTCGCTTTCGTAGGCGAGTTCTCTTTGCTTGGGGTTCA
TCGGACAAGCCCTTCCGCTCCTGGTGGAAACCCCCAAAAAAACCTGCTCA
AATAACCTAAAAGCGAAATTTTTCCCCCCCCCCCCCCCCCCGTCTCTATG
AATTGTTTACTTATTTATTTATTATTTTTCTCCCATGAAAACCTAGACCC
AACATGCGCCCGCGGGTAACTGAAATTGATTTCTCCTGTTTTTTGTAAGA
TGTTCCCGATTGGAGCCAATCGCCACCGGCAGTCTGACTTGACTTGATTA
CCTTGTAGGTGATACGGTACGCAGGGATATGGCGCATCGTCGCGGGGATA
GATGAGAAATGCCCCCGCTGTATTTTGTCTGCAAAACGTTTCCCAAAGCG
AGAGCGAGCGATGCTGTTGGGTGGTGAGGGTTGGTATTTTTTTTGGCGTG
ATCTTGTGTTTGCGGTAGGACTACCAGGCTTTGAAGAGTTTTCATGTTGG
GGAGGCGTTCCAGTCCCCGACTATTTAGTTTCCATCCCGGGGGAAAATGT
TATCATCTACCCATGGTTCGTGCCGGAACCTCGCCGCCATCCCGTACGAC
TCATGCTAAGCGCCGCCCCAACTCACACACACGAACGTAGCACACCCACG
CGCTCATCGCGTAATCGCCATAAAAAACGTATACATCTTATGTTCGTGTT
CTGGTCGTCGTCTAACCCGCGCGGGGTCCACGGGCAGGTTGTGGCTCCTC
TCGTGACCCACCAAAGGGCGCTCATCCCCGGGGCGCCTCCTCAGTTCTTG
TGCTCGAGGGCAATCGGGGGAGGTCCCCCTATACCTCTACTGG
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Coding sequence (CDS) from alignment at F-distichus_contig10513:47..1939-

>mRNA_F-distichus_contig10513.450.1 ID=mRNA_F-distichus_contig10513.450.1|Name=mRNA_F-distichus_contig10513.450.1|organism=Fucus distichus monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at F-distichus_contig10513:47..1939- (Fucus distichus monoicous)
TACGAATACGTGCCTGGCCGCGCCGCCCCCGAACGCGATGGTCCAGTGGA
TCATGGGGGTGGAGGATGGAAGGAGGCGTTTCCGTCCGTGAATCTAGCGA
CGGGATTTACATCCGACATCGGACCCCCCTTACACTTTGTGTATCAGTAC
GAATACGTGCCTGGCCGCGCCGCCCCCGAACGCGATGGTCCAGTGGATCA
TGGGGGTGGAGGATGGAAGGAGGCGTTTCCGTCCGTGAATCTAGCGACGG
GATTTACATCCGACATCGGACCCCCCTTACACTTTGTGTATCAGGGGGAT
GTTCACTGGTGGGAACCGGCGTCCACGGCTCCTCACCATACATTTCGTCT
TTGGCTTGGGGCGGCAAATGGCCTGATGTGCTTCGAGTTGGCGGAGACGC
GGCACTCCTCGCTTCCTCAGGGGGATGTTCACTGGTGGGAACCGGCGTCC
ACGGCTCCTCACCATACATTTCGTCTTTGGCTTGGGGCGGCAAATGGCCT
GATGTGCTTCGAGTTGGCGGAGACGCGGCACTCCTCGCTTCCTCAGGTTG
TGGCTCCTCTCGTGACCCACCAAAGGGCGCTCATCCCCGGGGCGCCTCCT
CAGTTCTTGTGCTCGAGGGCAATCGGGGGAGGTCCCCCTATACCTCTACT
GGTTGTGGCTCCTCTCGTGACCCACCAAAGGGCGCTCATCCCCGGGGCGC
CTCCTCAGTTCTTGTGCTCGAGGGCAATCGGGGGAGGTCCCCCTATACCT
CTACTG
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