mRNA_F-distichus_contig10503.442.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10503.442.1
Unique NamemRNA_F-distichus_contig10503.442.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10503.442.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10503contigF-distichus_contig10503:9095..9471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size158
Cds size123
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10503.442.1prot_F-distichus_contig10503.442.1Fucus distichus monoicouspolypeptideF-distichus_contig10503 9130..9471 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.0187435-UTR-F-distichus_contig10503:9094..91291622928971.0187435-UTR-F-distichus_contig10503:9094..9129Fucus distichus monoicousUTRF-distichus_contig10503 9095..9129 -
1690885086.7132335-UTR-F-distichus_contig10503:9094..91291690885086.7132335-UTR-F-distichus_contig10503:9094..9129Fucus distichus monoicousUTRF-distichus_contig10503 9095..9129 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928971.0331318-CDS-F-distichus_contig10503:9129..91721622928971.0331318-CDS-F-distichus_contig10503:9129..9172Fucus distichus monoicousCDSF-distichus_contig10503 9130..9172 -
1690885086.7237322-CDS-F-distichus_contig10503:9129..91721690885086.7237322-CDS-F-distichus_contig10503:9129..9172Fucus distichus monoicousCDSF-distichus_contig10503 9130..9172 -
1622928971.0510666-CDS-F-distichus_contig10503:9391..94711622928971.0510666-CDS-F-distichus_contig10503:9391..9471Fucus distichus monoicousCDSF-distichus_contig10503 9392..9471 -
1690885086.735553-CDS-F-distichus_contig10503:9391..94711690885086.735553-CDS-F-distichus_contig10503:9391..9471Fucus distichus monoicousCDSF-distichus_contig10503 9392..9471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10503.442.1

>prot_F-distichus_contig10503.442.1 ID=prot_F-distichus_contig10503.442.1|Name=mRNA_F-distichus_contig10503.442.1|organism=Fucus distichus monoicous|type=polypeptide|length=41bp
WILLLLINARGRFCYCCGQEGILWRKRSTPRNRATSNTRK*
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mRNA from alignment at F-distichus_contig10503:9095..9471-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10503.442.1 ID=mRNA_F-distichus_contig10503.442.1|Name=mRNA_F-distichus_contig10503.442.1|organism=Fucus distichus monoicous|type=mRNA|length=377bp|location=Sequence derived from alignment at F-distichus_contig10503:9095..9471- (Fucus distichus monoicous)
TGGATCCTACTGCTGCTGATCAACGCGAGGGGCCGTTTTTGTTATTGTTG
TGGGCAGGAGGGGATCCTTTGGCGTAAGAGGTGAGGTACTTGACCAAATG
TCCGTCACGCGTGGTTTCACGTTTCATCTTTCTCCAGTACACGCCCGGTG
TCTCGAGAAACAACATACGCTCACTCGCCCTAAATTCTCGCACGTGTCGG
AGCTGCGGCCGTTTTGAGACCAGCGTGCAAGCGCATGCTTTTCCCGTAGA
TGCCCGATGTGTCGAGAAGCATCATACGTAACCTCGTCCTAAACTCTAGG
TCCACCCCACGCAATCGCGCAACTTCCAACACAAGAAAATAAATAGGATG
GACTGGTGACGGATATCTACGAGGCGC
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Coding sequence (CDS) from alignment at F-distichus_contig10503:9095..9471-

>mRNA_F-distichus_contig10503.442.1 ID=mRNA_F-distichus_contig10503.442.1|Name=mRNA_F-distichus_contig10503.442.1|organism=Fucus distichus monoicous|type=CDS|length=246bp|location=Sequence derived from alignment at F-distichus_contig10503:9095..9471- (Fucus distichus monoicous)
TGGATCCTACTGCTGCTGATCAACGCGAGGGGCCGTTTTTGTTATTGTTG
TGGGCAGGAGGGGATCCTTTGGCGTAAGAGTGGATCCTACTGCTGCTGAT
CAACGCGAGGGGCCGTTTTTGTTATTGTTGTGGGCAGGAGGGGATCCTTT
GGCGTAAGAGGTCCACCCCACGCAATCGCGCAACTTCCAACACAAGAAAA
TAAGTCCACCCCACGCAATCGCGCAACTTCCAACACAAGAAAATAA
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