mRNA_F-distichus_contig10503.439.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: D7FXB5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXB5_ECTSI) HSP 1 Score: 135 bits (339), Expect = 8.160e-34 Identity = 63/102 (61.76%), Postives = 80/102 (78.43%), Query Frame = 1
Query: 19 SMVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSFADDNLLAIFHPSF 324
S+ DSLP MMYG GD++HPLPETVA MQ +V +YV++VT +AC AAEVKG+LDTECFV AVR+DK KFKRVK +LD ++ KN + DDNL ++HP+F
Sbjct: 23 SIADSLPMMMYGFGDEQHPLPETVAYMQEVVGEYVQYVTDKACKAAEVKGKLDTECFVLAVRNDKAKFKRVKELLDMNVHIKNCTRQRYVDDNL-TVYHPTF 123
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: Q6XLV5_9PHYC (FirrV-1-F2 n=1 Tax=Feldmannia irregularis virus a TaxID=231992 RepID=Q6XLV5_9PHYC) HSP 1 Score: 115 bits (288), Expect = 1.440e-25 Identity = 75/205 (36.59%), Postives = 109/205 (53.17%), Query Frame = -1
Query: 638 SYPRMPLEKLHQRLVKHCQDVYTKEFLEAHEHITNKCTGVQCVFMVENDQLVVCFRGSDSETDWRMNFHVSQ----SEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFK-ERVESTMDITRIVLDRDAITRVPVL-SYQHVGKPIQIRD 1234
SYP L H L C+DVY + ++ + TG Q ++ Q+VVCFRGSDS DW++N + + S VHSGF + SI+A+ L F+ + GE + ++F GHS+GG +AA A + + LPV+ VTFGSP+LG+A+ E E TR+V D DAI +P+ + HVG + I+D
Sbjct: 31 SYPSPALTDKHLELATLCRDVYCNGTESSDTYVKSNDTGAQATVRLKGKQVVVCFRGSDSPQDWKLNLQLYRVPFISRTHKNPANEVHSGFFIGHHSIKAKIYTKLNAFIAS-GE-CDSILFTGHSSGGA--LAAIAAFDFRNDKHLPVEVVTFGSPKLGNASLAVEYSERITRCTRVVNDNDAIALMPLSRGFHHVGNTLHIQD 231
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: A0A3R7KXI2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7KXI2_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 1.100e-13 Identity = 35/91 (38.46%), Postives = 58/91 (63.74%), Query Frame = 1
Query: 13 GESMVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSF 285
G +V+S+ MM+G GD+ PL ET A M+ LV +YV +T +A A +KG+LDTECF+F +R D +++R+ +L ++ + ++ F
Sbjct: 76 GGELVESIKHMMFGFGDEAEPLDETAALMEDLVVEYVHAMTKKAMEMATIKGKLDTECFIFLIRKDPERYERISELLRANDEFRAVLNSGF 166
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: UPI001F04F997 (uncharacterized protein LOC124452008 n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F04F997) HSP 1 Score: 83.6 bits (205), Expect = 2.880e-13 Identity = 60/193 (31.09%), Postives = 95/193 (49.22%), Query Frame = -1
Query: 530 ENDQLVVCFRGSDSETDWRMNFHVSQSEYPTGSGCFVHSGFLVQWVSIEAQFKQMLQNFMETHGEGLNEVVFCGHSAGGQCIIAAYACKEILDQYKLPVKAVTFGSPRLGDANFKERVESTMD--ITRIVLDRDAITRVP--VLSYQHVGKPIQIRDDCVLERETSTLEHIHWMIIGARSGDAGIRDHFISNY 1096
E++ +VV F+GS DW+ N + YP S C VH GF + ++ Q + F + ++V+ GHS GG +A A +++ + + V +TFGSPR+G+ FKE V+S ++ R+ RD +T +P +L Y+HVG I CV + + A I DHF++NY
Sbjct: 848 EDNTIVVSFQGSADLIDWKNNLKFLKKSYPGCSNCKVHIGFFDSYSPLKQQMLDKVNAFFLLNPN--SKVLVTGHSLGGA--MATLAAVDLV-KTRYQVDLITFGSPRVGNKEFKELVDSNLNGLNLRVTYKRDPVTVIPPQLLGYRHVGLEIY----CVGPGQCNEYPTNEPPNKDATRIRGNIFDHFMTNY 1031
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: Q8QN96_ESV1K (EsV-1-193 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN96_ESV1K) HSP 1 Score: 73.9 bits (180), Expect = 3.870e-13 Identity = 32/38 (84.21%), Postives = 35/38 (92.11%), Query Frame = 1
Query: 43 MMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAA 156
MMYGAGDDEHPLPETVACMQ LVA+YV HVTSEAC+ +
Sbjct: 9 MMYGAGDDEHPLPETVACMQQLVAEYVSHVTSEACLVS 46
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: F0WG55_9STRA (Uncharacterized protein AlNc14C88G5585 n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WG55_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 7.490e-13 Identity = 35/85 (41.18%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 31 SLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSF 285
S+ MM G GDD P+ E+VA M+ V +Y+ +T +A + VKG+LDTECF+F +R D+ K+ RVK +L ++ K ++ F
Sbjct: 58 SVRDMMIGFGDDMEPMEESVAVMKEFVVEYIHCMTKKAVDVSAVKGKLDTECFIFTIRKDQEKYGRVKDLLQANDELKEVLNSGF 142
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: D8LPL2_ECTSI (EsV-1-193/196 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPL2_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 1.100e-12 Identity = 31/38 (81.58%), Postives = 34/38 (89.47%), Query Frame = 1
Query: 43 MMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAA 156
MMYGAGDDEHPLPETV CMQ LVA+YV HVTSEAC+ +
Sbjct: 1 MMYGAGDDEHPLPETVGCMQQLVAEYVSHVTSEACLVS 38
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: A0A5D6XFL5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFL5_9STRA) HSP 1 Score: 76.3 bits (186), Expect = 2.810e-12 Identity = 32/88 (36.36%), Postives = 57/88 (64.77%), Query Frame = 1
Query: 22 MVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHILDSDLRTKNYMHMSF 285
+++S+ MM+G GD+ PL ET A M+ + +YV +T +A A+VKG+LDTECF+F +R D +++R+ +L ++ + ++ F
Sbjct: 116 LIESIKHMMFGFGDEVEPLDETAALMEDMTVEYVHAMTKKALDLAQVKGKLDTECFIFLIRKDPERYERIAELLRANDELRAVLNSGF 203
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: Q8QN93_ESV1K (EsV-1-196 n=1 Tax=Ectocarpus siliculosus virus 1 (isolate New Zealand/Kaikoura/1988) TaxID=654926 RepID=Q8QN93_ESV1K) HSP 1 Score: 72.0 bits (175), Expect = 3.270e-12 Identity = 31/39 (79.49%), Postives = 35/39 (89.74%), Query Frame = 1
Query: 40 AMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAA 156
+MMYGAGDDEHPLPETV CMQ LVA+YV HVTSEAC+ +
Sbjct: 31 SMMYGAGDDEHPLPETVDCMQQLVAEYVSHVTSEACLVS 69
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Match: A0A2P4X0B0_9STRA (Transcription initiation factor TFIID subunit TAF13 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X0B0_9STRA) HSP 1 Score: 73.2 bits (178), Expect = 5.090e-12 Identity = 31/74 (41.89%), Postives = 49/74 (66.22%), Query Frame = 1
Query: 22 MVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMAAEVKGRLDTECFVFAVRHDKPKFKRVKHIL 243
+V+S+ M++G GD+ PL ET M+ LV +YV +T +A A +KG+LDTECF+F +R D ++ R+ +L
Sbjct: 32 LVESIKHMLFGFGDEVEPLDETAELMEDLVVEYVHAMTKKAMELATIKGKLDTECFIFLIRKDPERYDRIAELL 105 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10503.439.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10503.439.1 >prot_F-distichus_contig10503.439.1 ID=prot_F-distichus_contig10503.439.1|Name=mRNA_F-distichus_contig10503.439.1|organism=Fucus distichus monoicous|type=polypeptide|length=141bp MEGDGESMVDSLPAMMYGAGDDEHPLPETVACMQHLVADYVRHVTSEACMback to top mRNA from alignment at F-distichus_contig10503:4910..6563- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10503.439.1 ID=mRNA_F-distichus_contig10503.439.1|Name=mRNA_F-distichus_contig10503.439.1|organism=Fucus distichus monoicous|type=mRNA|length=1654bp|location=Sequence derived from alignment at F-distichus_contig10503:4910..6563- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10503:4910..6563- >mRNA_F-distichus_contig10503.439.1 ID=mRNA_F-distichus_contig10503.439.1|Name=mRNA_F-distichus_contig10503.439.1|organism=Fucus distichus monoicous|type=CDS|length=846bp|location=Sequence derived from alignment at F-distichus_contig10503:4910..6563- (Fucus distichus monoicous)back to top |