mRNA_F-distichus_contig10503.438.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10503.438.1
Unique NamemRNA_F-distichus_contig10503.438.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10503.438.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10503contigF-distichus_contig10503:4163..4897 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size156
Cds size156
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928970.8814626-CDS-F-distichus_contig10503:4162..42391622928970.8814626-CDS-F-distichus_contig10503:4162..4239Fucus distichus monoicousCDSF-distichus_contig10503 4163..4239 -
1690885086.6522448-CDS-F-distichus_contig10503:4162..42391690885086.6522448-CDS-F-distichus_contig10503:4162..4239Fucus distichus monoicousCDSF-distichus_contig10503 4163..4239 -
1622928970.9125466-CDS-F-distichus_contig10503:4818..48971622928970.9125466-CDS-F-distichus_contig10503:4818..4897Fucus distichus monoicousCDSF-distichus_contig10503 4819..4897 -
1690885086.6626813-CDS-F-distichus_contig10503:4818..48971690885086.6626813-CDS-F-distichus_contig10503:4818..4897Fucus distichus monoicousCDSF-distichus_contig10503 4819..4897 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10503.438.1prot_F-distichus_contig10503.438.1Fucus distichus monoicouspolypeptideF-distichus_contig10503 4163..4897 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10503.438.1

>prot_F-distichus_contig10503.438.1 ID=prot_F-distichus_contig10503.438.1|Name=mRNA_F-distichus_contig10503.438.1|organism=Fucus distichus monoicous|type=polypeptide|length=52bp
PPANSVAGLPQHGWYRIFHGCRAVYTEENEIREERRPGPDRRRLCLPVHH
RR
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mRNA from alignment at F-distichus_contig10503:4163..4897-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10503.438.1 ID=mRNA_F-distichus_contig10503.438.1|Name=mRNA_F-distichus_contig10503.438.1|organism=Fucus distichus monoicous|type=mRNA|length=735bp|location=Sequence derived from alignment at F-distichus_contig10503:4163..4897- (Fucus distichus monoicous)
CCACCAGCGAACAGCGTGGCAGGACTCCCACAGCACGGCTGGTACCGGAT
CTTCCATGGCTGCCGCGCTGTATATACAGGTAAGAGAGAGAGAGTGTGGT
TAAGTGCCACACGTGTGGATCTTGCTCTCTGATTTGCTGTGCACAGCAAG
ACAGCGAACAAGTGCCACATGTGTGGATCTTGTTCGCTGTCTTGCTGTGC
ACCATAGCCATCCTCTACCACAACAGCACAGCACCACCGCTGCGTTGTGC
GTCATGCGCACACATTGGTTAAGCTCGCTCAGGCGACGACCCGGTTGCTG
TGATTGTTGTGGGCCAACTTCGAAAATGTTGGTGTGGGCTGTGCTGGTGT
TCTGTCCGCTGCTGAGCGTGTGTGCTGCTGGTGTTTGGAGGGCGCGCGTG
GTCCTGGGTGCCGTTCTCTTGTCACTGGTGTTCTGTCCGCTGCTGAGCGT
GTGTGTTGAGAGTGCGCGGATGGTTTGCATATTTGTGCTGATGTTTGGAG
GGCGCGCGTGGTCCTGGGCGCCGCTCTCTTGTCACTGGTGTTCTGTCCGC
TGCTGAGCGTGTGTGTTGAGAGTGGTGGTTTCTTGTTCGCGCGGCGGTAC
TGTATTCGATCACCAGACACACTTCTCTTGTGCGCCCGTGTTTTTTTATC
GAGCCGAGAGGAGAACGAGATACGCGAGGAGCGGAGGCCTGGTCCGGATC
GGAGGAGACTGTGCCTTCCTGTCCATCACCGCCGT
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Coding sequence (CDS) from alignment at F-distichus_contig10503:4163..4897-

>mRNA_F-distichus_contig10503.438.1 ID=mRNA_F-distichus_contig10503.438.1|Name=mRNA_F-distichus_contig10503.438.1|organism=Fucus distichus monoicous|type=CDS|length=312bp|location=Sequence derived from alignment at F-distichus_contig10503:4163..4897- (Fucus distichus monoicous)
CCACCAGCGAACAGCGTGGCAGGACTCCCACAGCACGGCTGGTACCGGAT
CTTCCATGGCTGCCGCGCTGTATATACAGCCACCAGCGAACAGCGTGGCA
GGACTCCCACAGCACGGCTGGTACCGGATCTTCCATGGCTGCCGCGCTGT
ATATACAGAGGAGAACGAGATACGCGAGGAGCGGAGGCCTGGTCCGGATC
GGAGGAGACTGTGCCTTCCTGTCCATCACCGCCGTAGGAGAACGAGATAC
GCGAGGAGCGGAGGCCTGGTCCGGATCGGAGGAGACTGTGCCTTCCTGTC
CATCACCGCCGT
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