mRNA_F-distichus_contig1046.408.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig1046.408.1
Unique NamemRNA_F-distichus_contig1046.408.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig1046.408.1 vs. uniprot
Match: D7FSD6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSD6_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 2.510e-12
Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 2 
Query:   71 MGAGASAASMSLEDRRALYQEVKSKYTRADLDALEDEARKAWLEVLTERERADLPRALGDGDDKAV 268
            MGAGASAA M L++RR LY+++K+KYTR+DLD L +E ++AWLEVL ERE    P A+   +  AV
Sbjct:    1 MGAGASAAGMPLQERRDLYEDLKNKYTRSDLDNLAEEEKQAWLEVLDEREAGTAPAAVTAAETTAV 66
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig1046.408.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FSD6_ECTSI2.510e-1256.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig1046contigF-distichus_contig1046:10685..12289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size551
Cds size291
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig1046.408.1prot_F-distichus_contig1046.408.1Fucus distichus monoicouspolypeptideF-distichus_contig1046 10875..11809 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.5479307-UTR-F-distichus_contig1046:10684..108741622928965.5479307-UTR-F-distichus_contig1046:10684..10874Fucus distichus monoicousUTRF-distichus_contig1046 10685..10874 -
1690885084.9732318-UTR-F-distichus_contig1046:10684..108741690885084.9732318-UTR-F-distichus_contig1046:10684..10874Fucus distichus monoicousUTRF-distichus_contig1046 10685..10874 -
1622928965.5994759-UTR-F-distichus_contig1046:11809..118261622928965.5994759-UTR-F-distichus_contig1046:11809..11826Fucus distichus monoicousUTRF-distichus_contig1046 11810..11826 -
1690885085.0167854-UTR-F-distichus_contig1046:11809..118261690885085.0167854-UTR-F-distichus_contig1046:11809..11826Fucus distichus monoicousUTRF-distichus_contig1046 11810..11826 -
1622928965.618661-UTR-F-distichus_contig1046:12236..122891622928965.618661-UTR-F-distichus_contig1046:12236..12289Fucus distichus monoicousUTRF-distichus_contig1046 12237..12289 -
1690885085.0306396-UTR-F-distichus_contig1046:12236..122891690885085.0306396-UTR-F-distichus_contig1046:12236..12289Fucus distichus monoicousUTRF-distichus_contig1046 12237..12289 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928965.5684898-CDS-F-distichus_contig1046:10874..111051622928965.5684898-CDS-F-distichus_contig1046:10874..11105Fucus distichus monoicousCDSF-distichus_contig1046 10875..11105 -
1690885084.9895172-CDS-F-distichus_contig1046:10874..111051690885084.9895172-CDS-F-distichus_contig1046:10874..11105Fucus distichus monoicousCDSF-distichus_contig1046 10875..11105 -
1622928965.5819762-CDS-F-distichus_contig1046:11749..118091622928965.5819762-CDS-F-distichus_contig1046:11749..11809Fucus distichus monoicousCDSF-distichus_contig1046 11750..11809 -
1690885085.0027528-CDS-F-distichus_contig1046:11749..118091690885085.0027528-CDS-F-distichus_contig1046:11749..11809Fucus distichus monoicousCDSF-distichus_contig1046 11750..11809 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig1046.408.1

>prot_F-distichus_contig1046.408.1 ID=prot_F-distichus_contig1046.408.1|Name=mRNA_F-distichus_contig1046.408.1|organism=Fucus distichus monoicous|type=polypeptide|length=97bp
MGAGASAASMSLEDRRALYQEVKSKYTRADLDALEDEARKAWLEVLTERE
RADLPRALGDGDDKAVPDNAGSFSSKNSIFLSLPRLSLSFVDFYDM*
back to top

mRNA from alignment at F-distichus_contig1046:10685..12289-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig1046.408.1 ID=mRNA_F-distichus_contig1046.408.1|Name=mRNA_F-distichus_contig1046.408.1|organism=Fucus distichus monoicous|type=mRNA|length=1605bp|location=Sequence derived from alignment at F-distichus_contig1046:10685..12289- (Fucus distichus monoicous)
GGTATGTAGAAGGGTTGTGATTACTTAATCCAACAAGTGCTAGACGGGCA
TTGGTGAGTTAAGTCGATCGTTGTTAATCTCGACCGTTCACATTAAAGAA
GAAACCCTCTTTATCATTCTGCCCAAGCGCAATCAAGGAATCTCGTCCTC
TTGGGTAGCGTCCCTCTAGAGCGGCTGCTGTCGATCAGACCGCAAGATGT
ATTGATAGCACTACGGGGATGCATCTTTCCTTATCATGGCGATGACCAAA
ATTCTGAACCGACGGTATGAAGGATGTGGTTAAAGCTACCTGCTATATTT
CAAAAGCATCATGTACAGGGTGCCCCGGCCGCAAACGTTGATGCATACTG
ACAATTAAAACTTGTTGGACAAATGGTGGACTCGGGCAGAAGTCGCAACA
ACGGTGGTATCGTACCTTGTTTTATCTTATTATGCTATCCTTGCACCTAT
TTTTTTTATTTAGTGAAATAGTGCAACGCCATGGGGGCTGGGGCGAGCGC
CGCAAGCATGTCGCTGGAGGATAGGAGAGCGCTGTATCAGGTGAGAAGTT
AGTATTGGCACTTGTGCTAGGTCGACCCGTGGTGTCAGGAAGGCAAAAAT
GATTATATCTGGCAAATCTAATCTAAAAGTTCCGTAGGGGGGTTCGGTTC
TGTCCCTGAAGAAGTGAACATTTTTGCCTGCCCTCGGAACGGTTCCATAG
GTACGCCCGGTGCATTCGGTGAATGTTAGCATAGAGTACAGAGTGTAGAG
TGTGAGAGTATAGACTAGCACTACACTATAACTGTGAACCTTTCGTGTTG
ACTTATTAATCCGATTTTTTGGTCGGGACAGCCGTAGAGACCACTTCCGG
CTTTATATATGTTCGGCACAGTAAAGCGTATTTTCCGTCAAATCAGCTGA
TCGAACTGTTTATTGTGTCTTGAGAGAGGCTGCTGCTTTTCATGGTTGAT
TTAATTTGTGAAATTTCGTGGCCTTTAAAACAACGACCGCAACTTCTAGA
GTGCTCGTAGCGCTGTGGGCGGGCGAAGGATACGCCGGTGGGGAGTTGGA
TATGGCGTAGAAGAGTCCCTTTCGATTCTTCTTGCAGTGTACGCTGTTCA
GAACTCGCCACCAACCTCTCCGCAACAACAATGATACCATGGTATCTTTT
CATAATCATAATTATAATGAATGACACCCTACAGGAAGTGAAGAGCAAAT
ACACAAGGGCTGATCTTGACGCTCTCGAGGACGAGGCTAGAAAGGCGTGG
CTGGAGGTGCTTACCGAGCGCGAAAGGGCAGATCTGCCCAGGGCGTTAGG
AGACGGAGACGACAAGGCTGTACCGGACAACGCGGGTAGTTTTTCGTCGA
AGAACAGCATATTTCTTTCTCTCCCCCGTCTCTCTCTGTCTTTCGTAGAT
TTCTATGATATGTAGACCGACGTTTCACGGGTAAAACATCAGTTGAGTTG
AGACAAAAAAAGGCTCGCAGCAAGTTTGCGCAGTGTTATATGTACCAGGT
ATGTATGTATGTGATAGTGTCTTGCTCGTGCGTTCAGAGGTTGTTATACC
GTAGGTCAATGTACATTTTTATCGTTTTATCATACGCCCCGAGGTACAGA
TCAAA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig1046:10685..12289-

>mRNA_F-distichus_contig1046.408.1 ID=mRNA_F-distichus_contig1046.408.1|Name=mRNA_F-distichus_contig1046.408.1|organism=Fucus distichus monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at F-distichus_contig1046:10685..12289- (Fucus distichus monoicous)
ATGGGGGCTGGGGCGAGCGCCGCAAGCATGTCGCTGGAGGATAGGAGAGC
GCTGTATCAGATGGGGGCTGGGGCGAGCGCCGCAAGCATGTCGCTGGAGG
ATAGGAGAGCGCTGTATCAGGAAGTGAAGAGCAAATACACAAGGGCTGAT
CTTGACGCTCTCGAGGACGAGGCTAGAAAGGCGTGGCTGGAGGTGCTTAC
CGAGCGCGAAAGGGCAGATCTGCCCAGGGCGTTAGGAGACGGAGACGACA
AGGCTGTACCGGACAACGCGGGTAGTTTTTCGTCGAAGAACAGCATATTT
CTTTCTCTCCCCCGTCTCTCTCTGTCTTTCGTAGATTTCTATGATATGTA
GGAAGTGAAGAGCAAATACACAAGGGCTGATCTTGACGCTCTCGAGGACG
AGGCTAGAAAGGCGTGGCTGGAGGTGCTTACCGAGCGCGAAAGGGCAGAT
CTGCCCAGGGCGTTAGGAGACGGAGACGACAAGGCTGTACCGGACAACGC
GGGTAGTTTTTCGTCGAAGAACAGCATATTTCTTTCTCTCCCCCGTCTCT
CTCTGTCTTTCGTAGATTTCTATGATATGTAG
back to top