mRNA_F-distichus_contig10430.386.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE) HSP 1 Score: 101 bits (252), Expect = 1.370e-23 Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query: 43 HHREGRVIALKYASFTMVALYVPNNGVTLESFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFKAL 273
H REGRVIA++Y S T++ALYVPNNG ESF+RR WD FV Y LV+ GDLNVAH+DADLTH +FFK +
Sbjct: 194 HDREGRVIAIEYPSVTVLALYVPNNGSKAESFQRRRRWDDELCGFVDKYSGKLVITGDLNVAHQDADLTHASFFKGM 270
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A446RVH6_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446RVH6_TRITD) HSP 1 Score: 78.6 bits (192), Expect = 1.730e-16 Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
D S H +GRVI +++ SF ++ Y PNNG E SF+RR +WD FV D+PL+ GDLNV+H++ D++HP FF
Sbjct: 47 DRTSSKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVDKPLIWCGDLNVSHDEIDVSHPNFFS 129
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A835Q1X8_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q1X8_VANPL) HSP 1 Score: 78.6 bits (192), Expect = 2.430e-16 Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 43 HHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
H GRVI ++ SF ++ YVPNNG T E SF+RR +WD FV D+PL+ GDLNV+H+D D++HP FF
Sbjct: 26 HEPGGRVILAEFESFYLLNTYVPNNGWTEEENSFQRRRKWDKRMIEFVVQLDKPLIWCGDLNVSHQDIDVSHPEFFS 102
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A835PCJ3_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PCJ3_VANPL) HSP 1 Score: 78.6 bits (192), Expect = 3.360e-16 Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query: 43 HHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
H GRVI ++ SF ++ YVPNNG T E SF+RR +WD FV D+PL+ GDLNV+H+D D++HP FF
Sbjct: 26 HEPGGRVILAEFESFYLLNTYVPNNGWTEEENSFQRRRKWDKRMIEFVVQLDKPLIWCGDLNVSHQDIDVSHPEFFS 102
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A835PVE3_VANPL (DNA-(apurinic or apyrimidinic site) endonuclease n=4 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PVE3_VANPL) HSP 1 Score: 81.3 bits (199), Expect = 3.560e-16 Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query: 19 SADGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
S D S H GRVI ++ SF ++ YVPNNG T E SF+RR +WD FV D+PL+ GDLNV+H+D D++HP FF
Sbjct: 164 SLDRKSSKHEPGGRVILAEFESFYLLNTYVPNNGWTEEENSFQRRRKWDKRMIEFVVQLDKPLIWCGDLNVSHQDIDVSHPEFFS 248
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: UPI0010A00CC1 (DNA-(apurinic or apyrimidinic site) lyase isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0010A00CC1) HSP 1 Score: 80.9 bits (198), Expect = 4.890e-16 Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1
Query: 19 SADGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
S DG + H +GRVI ++ SF ++ YVPNNG + SF+RR +WD FV D+PL+ GDLNV+H+D D++HP FF
Sbjct: 163 SLDGKASKHEPDGRVILAEFESFFLLNTYVPNNGWKDDENSFQRRRKWDKRMLEFVVQLDKPLIWCGDLNVSHQDIDVSHPDFFS 247
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: K3Z6P3_SETIT (DNA-(apurinic or apyrimidinic site) endonuclease n=12 Tax=Paniceae TaxID=147428 RepID=K3Z6P3_SETIT) HSP 1 Score: 80.9 bits (198), Expect = 6.090e-16 Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFKA 270
D S H +GRVI +++ SF ++ Y PNNG E SF+RR +WD FV D+PL+ GDLNV+HE+ D++HP FF +
Sbjct: 197 DKTSSKHETDGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQCVDKPLIWCGDLNVSHEEIDVSHPDFFSS 280
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A811R944_9POAL (DNA-(apurinic or apyrimidinic site) endonuclease n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A811R944_9POAL) HSP 1 Score: 79.3 bits (194), Expect = 8.730e-16 Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFKA 270
D S H +GRVI ++ SF ++ Y PNNG E SF+RR +WD FV D+PL+ GDLNV+HE+ D++HP FF +
Sbjct: 166 DRTSSKHETDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQHVDKPLIWCGDLNVSHEEIDVSHPDFFSS 249
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A3L6T3J5_PANMI (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Panicum TaxID=4539 RepID=A0A3L6T3J5_PANMI) HSP 1 Score: 79.7 bits (195), Expect = 9.390e-16 Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1
Query: 25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFF 264
D S H +GRVI +++ SF ++ Y PNNG E SF+RR +WD FV D+PL+ GDLNV+HE+ D++HP FF
Sbjct: 112 DRTSSKHETDGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKKMLEFVQRVDKPLIWCGDLNVSHEEIDVSHPDFF 193
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A5J9WXK8_9POAL (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WXK8_9POAL) HSP 1 Score: 79.7 bits (195), Expect = 1.260e-15 Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query: 25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFKA 270
D S H +GRVI ++ SF ++ Y PNNG E SF+RR +WD FV D+PL+ GDLNV+HE+ D++HP FF +
Sbjct: 151 DRTSSKHESDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVDKPLIWCGDLNVSHEEIDVSHPDFFSS 234 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig10430.386.1 >prot_F-distichus_contig10430.386.1 ID=prot_F-distichus_contig10430.386.1|Name=mRNA_F-distichus_contig10430.386.1|organism=Fucus distichus monoicous|type=polypeptide|length=47bp MFPSADGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLESFRRR*back to top mRNA from alignment at F-distichus_contig10430:10185..11006- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig10430.386.1 ID=mRNA_F-distichus_contig10430.386.1|Name=mRNA_F-distichus_contig10430.386.1|organism=Fucus distichus monoicous|type=mRNA|length=822bp|location=Sequence derived from alignment at F-distichus_contig10430:10185..11006- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig10430:10185..11006- >mRNA_F-distichus_contig10430.386.1 ID=mRNA_F-distichus_contig10430.386.1|Name=mRNA_F-distichus_contig10430.386.1|organism=Fucus distichus monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at F-distichus_contig10430:10185..11006- (Fucus distichus monoicous)back to top |