mRNA_F-distichus_contig10430.386.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10430.386.1
Unique NamemRNA_F-distichus_contig10430.386.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A6H5KBX5_9PHAE (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBX5_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 1.370e-23
Identity = 47/77 (61.04%), Postives = 56/77 (72.73%), Query Frame = 1
Query:   43 HHREGRVIALKYASFTMVALYVPNNGVTLESFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFKAL 273
            H REGRVIA++Y S T++ALYVPNNG   ESF+RR  WD     FV  Y   LV+ GDLNVAH+DADLTH +FFK +
Sbjct:  194 HDREGRVIAIEYPSVTVLALYVPNNGSKAESFQRRRRWDDELCGFVDKYSGKLVITGDLNVAHQDADLTHASFFKGM 270          
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A446RVH6_TRITD (Uncharacterized protein n=1 Tax=Triticum turgidum subsp. durum TaxID=4567 RepID=A0A446RVH6_TRITD)

HSP 1 Score: 78.6 bits (192), Expect = 1.730e-16
Identity = 37/83 (44.58%), Postives = 52/83 (62.65%), Query Frame = 1
Query:   25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
            D  S  H  +GRVI +++ SF ++  Y PNNG   E  SF+RR +WD     FV   D+PL+  GDLNV+H++ D++HP FF 
Sbjct:   47 DRTSSKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVDKPLIWCGDLNVSHDEIDVSHPNFFS 129          
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A835Q1X8_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835Q1X8_VANPL)

HSP 1 Score: 78.6 bits (192), Expect = 2.430e-16
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   43 HHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
            H   GRVI  ++ SF ++  YVPNNG T E  SF+RR +WD     FV   D+PL+  GDLNV+H+D D++HP FF 
Sbjct:   26 HEPGGRVILAEFESFYLLNTYVPNNGWTEEENSFQRRRKWDKRMIEFVVQLDKPLIWCGDLNVSHQDIDVSHPEFFS 102          
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A835PCJ3_VANPL (Uncharacterized protein n=1 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PCJ3_VANPL)

HSP 1 Score: 78.6 bits (192), Expect = 3.360e-16
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 1
Query:   43 HHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
            H   GRVI  ++ SF ++  YVPNNG T E  SF+RR +WD     FV   D+PL+  GDLNV+H+D D++HP FF 
Sbjct:   26 HEPGGRVILAEFESFYLLNTYVPNNGWTEEENSFQRRRKWDKRMIEFVVQLDKPLIWCGDLNVSHQDIDVSHPEFFS 102          
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A835PVE3_VANPL (DNA-(apurinic or apyrimidinic site) endonuclease n=4 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835PVE3_VANPL)

HSP 1 Score: 81.3 bits (199), Expect = 3.560e-16
Identity = 41/85 (48.24%), Postives = 53/85 (62.35%), Query Frame = 1
Query:   19 SADGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
            S D  S  H   GRVI  ++ SF ++  YVPNNG T E  SF+RR +WD     FV   D+PL+  GDLNV+H+D D++HP FF 
Sbjct:  164 SLDRKSSKHEPGGRVILAEFESFYLLNTYVPNNGWTEEENSFQRRRKWDKRMIEFVVQLDKPLIWCGDLNVSHQDIDVSHPEFFS 248          
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: UPI0010A00CC1 (DNA-(apurinic or apyrimidinic site) lyase isoform X1 n=2 Tax=Dendrobium catenatum TaxID=906689 RepID=UPI0010A00CC1)

HSP 1 Score: 80.9 bits (198), Expect = 4.890e-16
Identity = 39/85 (45.88%), Postives = 54/85 (63.53%), Query Frame = 1
Query:   19 SADGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFK 267
            S DG +  H  +GRVI  ++ SF ++  YVPNNG   +  SF+RR +WD     FV   D+PL+  GDLNV+H+D D++HP FF 
Sbjct:  163 SLDGKASKHEPDGRVILAEFESFFLLNTYVPNNGWKDDENSFQRRRKWDKRMLEFVVQLDKPLIWCGDLNVSHQDIDVSHPDFFS 247          
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: K3Z6P3_SETIT (DNA-(apurinic or apyrimidinic site) endonuclease n=12 Tax=Paniceae TaxID=147428 RepID=K3Z6P3_SETIT)

HSP 1 Score: 80.9 bits (198), Expect = 6.090e-16
Identity = 38/84 (45.24%), Postives = 53/84 (63.10%), Query Frame = 1
Query:   25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFKA 270
            D  S  H  +GRVI +++ SF ++  Y PNNG   E  SF+RR +WD     FV   D+PL+  GDLNV+HE+ D++HP FF +
Sbjct:  197 DKTSSKHETDGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQCVDKPLIWCGDLNVSHEEIDVSHPDFFSS 280          
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A811R944_9POAL (DNA-(apurinic or apyrimidinic site) endonuclease n=3 Tax=Andropogoneae TaxID=147429 RepID=A0A811R944_9POAL)

HSP 1 Score: 79.3 bits (194), Expect = 8.730e-16
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFKA 270
            D  S  H  +GRVI  ++ SF ++  Y PNNG   E  SF+RR +WD     FV   D+PL+  GDLNV+HE+ D++HP FF +
Sbjct:  166 DRTSSKHETDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQHVDKPLIWCGDLNVSHEEIDVSHPDFFSS 249          
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A3L6T3J5_PANMI (DNA-(apurinic or apyrimidinic site) endonuclease n=2 Tax=Panicum TaxID=4539 RepID=A0A3L6T3J5_PANMI)

HSP 1 Score: 79.7 bits (195), Expect = 9.390e-16
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1
Query:   25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFF 264
            D  S  H  +GRVI +++ SF ++  Y PNNG   E  SF+RR +WD     FV   D+PL+  GDLNV+HE+ D++HP FF
Sbjct:  112 DRTSSKHETDGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKKMLEFVQRVDKPLIWCGDLNVSHEEIDVSHPDFF 193          
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Match: A0A5J9WXK8_9POAL (DNA-(apurinic or apyrimidinic site) endonuclease n=1 Tax=Eragrostis curvula TaxID=38414 RepID=A0A5J9WXK8_9POAL)

HSP 1 Score: 79.7 bits (195), Expect = 1.260e-15
Identity = 38/84 (45.24%), Postives = 52/84 (61.90%), Query Frame = 1
Query:   25 DGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLE--SFRRR*EWDGNFRSFVSAYDRPLVVIGDLNVAHEDADLTHPAFFKA 270
            D  S  H  +GRVI  ++ SF ++  Y PNNG   E  SF+RR +WD     FV   D+PL+  GDLNV+HE+ D++HP FF +
Sbjct:  151 DRTSSKHESDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQVDKPLIWCGDLNVSHEEIDVSHPDFFSS 234          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10430.386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBX5_9PHAE1.370e-2361.04DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A446RVH6_TRITD1.730e-1644.58Uncharacterized protein n=1 Tax=Triticum turgidum ... [more]
A0A835Q1X8_VANPL2.430e-1649.35Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835PCJ3_VANPL3.360e-1649.35Uncharacterized protein n=1 Tax=Vanilla planifolia... [more]
A0A835PVE3_VANPL3.560e-1648.24DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
UPI0010A00CC14.890e-1645.88DNA-(apurinic or apyrimidinic site) lyase isoform ... [more]
K3Z6P3_SETIT6.090e-1645.24DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A811R944_9POAL8.730e-1645.24DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A3L6T3J5_PANMI9.390e-1646.34DNA-(apurinic or apyrimidinic site) endonuclease n... [more]
A0A5J9WXK8_9POAL1.260e-1545.24DNA-(apurinic or apyrimidinic site) endonuclease n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10430contigF-distichus_contig10430:10185..11006 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size275
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10430.386.1prot_F-distichus_contig10430.386.1Fucus distichus monoicouspolypeptideF-distichus_contig10430 10310..10997 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.4694614-UTR-F-distichus_contig10430:10184..103091622928962.4694614-UTR-F-distichus_contig10430:10184..10309Fucus distichus monoicousUTRF-distichus_contig10430 10185..10309 -
1690885083.907309-UTR-F-distichus_contig10430:10184..103091690885083.907309-UTR-F-distichus_contig10430:10184..10309Fucus distichus monoicousUTRF-distichus_contig10430 10185..10309 -
1622928962.5103118-UTR-F-distichus_contig10430:10997..110061622928962.5103118-UTR-F-distichus_contig10430:10997..11006Fucus distichus monoicousUTRF-distichus_contig10430 10998..11006 -
1690885083.9362218-UTR-F-distichus_contig10430:10997..110061690885083.9362218-UTR-F-distichus_contig10430:10997..11006Fucus distichus monoicousUTRF-distichus_contig10430 10998..11006 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.4834335-CDS-F-distichus_contig10430:10309..103111622928962.4834335-CDS-F-distichus_contig10430:10309..10311Fucus distichus monoicousCDSF-distichus_contig10430 10310..10311 -
1690885083.9201078-CDS-F-distichus_contig10430:10309..103111690885083.9201078-CDS-F-distichus_contig10430:10309..10311Fucus distichus monoicousCDSF-distichus_contig10430 10310..10311 -
1622928962.49467-CDS-F-distichus_contig10430:10858..109971622928962.49467-CDS-F-distichus_contig10430:10858..10997Fucus distichus monoicousCDSF-distichus_contig10430 10859..10997 -
1690885083.9284382-CDS-F-distichus_contig10430:10858..109971690885083.9284382-CDS-F-distichus_contig10430:10858..10997Fucus distichus monoicousCDSF-distichus_contig10430 10859..10997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10430.386.1

>prot_F-distichus_contig10430.386.1 ID=prot_F-distichus_contig10430.386.1|Name=mRNA_F-distichus_contig10430.386.1|organism=Fucus distichus monoicous|type=polypeptide|length=47bp
MFPSADGLSKVHHREGRVIALKYASFTMVALYVPNNGVTLESFRRR*
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mRNA from alignment at F-distichus_contig10430:10185..11006-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10430.386.1 ID=mRNA_F-distichus_contig10430.386.1|Name=mRNA_F-distichus_contig10430.386.1|organism=Fucus distichus monoicous|type=mRNA|length=822bp|location=Sequence derived from alignment at F-distichus_contig10430:10185..11006- (Fucus distichus monoicous)
ATATATAATATGTTTCCTTCGGCAGACGGGCTTTCGAAAGTACACCATCG CGAAGGGCGCGTGATCGCCTTGAAGTACGCCTCATTCACCATGGTGGCGC TCTACGTTCCCAACAACGGAGTGACGCTGGAGAGCTTCAGACGCAGGTGT GTTAAAAAACGGTACGCTACCGCCTCATGGCTACGGCTGTTGATGTCACA CAAACGCGCAGAAAGTGGCGGATGTGTTTCATCACCATGCGAGTCGTTCG AGCGCGTTGCTACGACGCGCCAGCAGCAGTATCAGTAGCATCAGCAGAGG TAAATATCGCCACACGACACAAACCGAACACACCACGTGTTGGCGGGCGG GGCGCGCCATATATCAGTGCCTCGTTGCGGCCGCTTTCCGTCCTTCATAT CCCCTTCATCTCTCATCTCACCTGATCCAATTTCACCCTTCCACCATCCT ACAGCATCCCATCTCCATCTCACCCCGTACCCTCCGACCTTTATCACAGG TCGTTTCATGCCATACGACCTTACCCTTGGCATAATCTGCAGCATGCCGT ACCATTCCATAGCATACCACACGATATGGCATCATATTCCCATCCCATCT CATCCCATGCTATGTTATATTATCTTGTATGTCATGTCCCTGCCCCTCTT GGCCTTCGGTCGTGGGCTGCTGGTGGTTAACGCCGCCCGCCAGAGAAGAG TGGGACGGAAACTTTCGGTCCTTCGTGAGCGCGTACGATAGGCCATTGGT CGTCATCGGAGATCTCAACGTGGCGCACGAGGACGCGGATCTCACTCACC CGGCATTCTTCAAGGCACTACT
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Coding sequence (CDS) from alignment at F-distichus_contig10430:10185..11006-

>mRNA_F-distichus_contig10430.386.1 ID=mRNA_F-distichus_contig10430.386.1|Name=mRNA_F-distichus_contig10430.386.1|organism=Fucus distichus monoicous|type=CDS|length=282bp|location=Sequence derived from alignment at F-distichus_contig10430:10185..11006- (Fucus distichus monoicous)
ATGTTTCCTTCGGCAGACGGGCTTTCGAAAGTACACCATCGCGAAGGGCG
CGTGATCGCCTTGAAGTACGCCTCATTCACCATGGTGGCGCTCTACGTTC
CCAACAACGGAGTGACGCTGGAGAGCTTCAGACGCAGGTATGTTTCCTTC
GGCAGACGGGCTTTCGAAAGTACACCATCGCGAAGGGCGCGTGATCGCCT
TGAAGTACGCCTCATTCACCATGGTGGCGCTCTACGTTCCCAACAACGGA
GTGACGCTGGAGAGCTTCAGACGCAGGTAAAA
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