mRNA_F-distichus_contig10427.382.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10427.382.1
Unique NamemRNA_F-distichus_contig10427.382.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: A0A5D6Y3V1_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y3V1_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.480e-22
Identity = 70/198 (35.35%), Postives = 95/198 (47.98%), Query Frame = 3 
Query:  126 LRELIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTCGEPPREEPIEDAKDAAETLGAKETGVDHVRVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSM 719
            +R+L  +GVP   RE VY++VSGA  K+   G  YYASLV                                                     +  +AA+TL            +R+IE D+ R F +  T++  + G +ALRR+LRAYS  NP++GYCQG+NFI G L   V EE AFWLL V+CE+L P Y+T +M
Sbjct:  296 VRQLARAGVPRSWRERVYMTVSGAREKQQSAGVDYYASLV-----------------------------------------------------EQSEAADTLA-----------FRQIELDIGRTFGHSGTKICTVAGRAALRRVLRAYSLRNPSIGYCQGLNFIVGFLTLAVEEEAAFWLLAVVCEDLFPGYYTPTM 429
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: A0A4D9D5J7_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D5J7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 4.970e-22
Identity = 82/234 (35.04%), Postives = 110/234 (47.01%), Query Frame = 3 
Query:   81 SVDPVPGSAKHWGAHLRELIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTC---GEPPREEPIEDAKDAAETLGAKETG------VDHV----------RVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSMLG 725
            S  P PG        L+ L+W G+P ++R+ VY  +SGA  KR+  G  YY  L               GE    G    + ++R+          T    GE  R E    +      +G +  G      VD V          +V ++IE DL R F +    +N   G + LRR+LRAY+  NP+VGYCQGMNFIAGLLL  VSEETAFW L  +CE + P   +  +LG
Sbjct:  289 SYGPCPGVQSP--GDLKGLVWQGIPPDLRDPVYEWLSGASCKREALGVNYYHRLAAASEEENLGLGVIGGEEGDEGEEAWVCVTREREDAGVGMGGTGVHGGEGLRWECGAGSGAGGGYVGRRGAGGKGGMVVDVVMPELDAAWGAKVAQDIELDLGRAFADSDAAINTPEGRATLRRVLRAYALRNPSVGYCQGMNFIAGLLLLAVSEETAFWTLAHVCEEVSPLCFSPPLLG 520
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: A0A4D9D5Q8_9STRA (Rab-GAP TBC domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D5Q8_9STRA)

HSP 1 Score: 110 bits (275), Expect = 7.630e-22
Identity = 78/219 (35.62%), Postives = 106/219 (48.40%), Query Frame = 3 
Query:  126 LRELIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTC---GEPPREEPIEDAKDAAETLGAKETG------VDHV----------RVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSMLG 725
            L+ L+W G+P ++R+ VY  +SGA  KR+  G  YY  L               GE    G    + ++R+          T    GE  R E    +      +G +  G      VD V          +V ++IE DL R F +    +N   G + LRR+LRAY+  NP+VGYCQGMNFIAGLLL  VSEETAFW L  +CE + P   +  +LG
Sbjct:    8 LKGLVWQGIPPDLRDPVYEWLSGASCKREALGVNYYHRLAAASEEENLGLGVIGGEEGDEGEEAWVCVTREREDAGVGMGGTGVHGGEGLRWECGAGSGAGGGYVGRRGAGGKGGMVVDVVMPELDAAWGAKVAQDIELDLGRAFADSDAAINTPEGRATLRRVLRAYALRNPSVGYCQGMNFIAGLLLLAVSEETAFWTLAHVCEEVSPLCFSPPLLG 226
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: A0A6A3P359_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3P359_9STRA)

HSP 1 Score: 105 bits (262), Expect = 4.370e-20
Identity = 63/198 (31.82%), Postives = 89/198 (44.95%), Query Frame = 3 
Query:  126 LRELIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTCGEPPREEPIEDAKDAAETLGAKETGVDHVRVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSM 719
            L +L  +G+P  +RE  Y+++SGA  K+   GP YYA+LV                                                          AET+            +R+IE D++R F +  T +    G   LRR+LRAYS HNP+VGYCQG+NFI   L+ +  EE  FWLL V CE+L+P Y++ +M
Sbjct:  309 LLQLARAGIPRHLRERAYMNLSGASEKQANAGPNYYANLVK--------------------------------------------------------VAETM--------ETETFRQIELDIDRTFGHSGTTICSEAGRDQLRRILRAYSLHNPSVGYCQGLNFIVAFLMLMADEEVVFWLLSVFCEDLYPGYYSPAM 442
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: A0A3F2RY14_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RY14_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.930e-20
Identity = 64/195 (32.82%), Postives = 89/195 (45.64%), Query Frame = 3 
Query:  135 LIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTCGEPPREEPIEDAKDAAETLGAKETGVDHVRVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSM 719
            L  +G+P  +RE  Y+S+SGA  K++  G  YYA+LV                                   E M+ DT                                +R+IE D++R F +  T V   +G + LRR+LRAYS  NP+VGYCQG+NFI   L+ +  EE  FWLL V CE+L+P Y+T +M
Sbjct:  112 LSRAGIPRHLRERAYMSLSGASEKQENEGAEYYANLV--------------------------------KEAETMETDT--------------------------------FRQIELDIDRTFGHSGTTVCTDSGRAQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLIADEEAVFWLLSVFCEDLYPGYYTPTM 242
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: H3H2Z1_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H2Z1_PHYRM)

HSP 1 Score: 103 bits (258), Expect = 1.390e-19
Identity = 66/201 (32.84%), Postives = 91/201 (45.27%), Query Frame = 3 
Query:  120 AHLRELIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTCGEPPREEPIEDAKDAAETLGAKETGVDHVRVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSML 722
            A L EL  +G+P  +RE  Y+++SGA  K+   GP YYA LV                                               RE       D+ ET             +R+IE D++R F +  T +   +G   LRR+LRAYS  NP+VGYCQG+NFI   L+ +  EE  FWLL V CE+L+P Y++  M+
Sbjct:  317 ALLVELARAGIPRHLRERAYMNLSGASEKQSNAGPNYYAGLV-----------------------------------------------RE------ADSTET-----------ETFRQIELDIDRTFGHSGTAICSQSGRDQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLMADEEAVFWLLSVFCEDLYPGYYSPDMV 453
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: A0A8K1CN90_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CN90_PYTOL)

HSP 1 Score: 99.0 bits (245), Expect = 2.020e-19
Identity = 61/200 (30.50%), Postives = 86/200 (43.00%), Query Frame = 3 
Query:  120 AHLRELIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTCGEPPREEPIEDAKDAAETLGAKETGVDHVRVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSM 719
            A ++ +   G+P   R+ VY+++SGA  K++     YYASLV      + ++                                                                +R+IE D++R F +  T++      S LRR+L+ YS  NP VGYCQG+NFI G L   V EETAFWLL VICE+L P YH  +M
Sbjct:   87 ATVQRMARRGIPRHWRQRVYMAMSGATEKKESEASDYYASLVAQLASRDSVS----------------------------------------------------------------FRQIELDIDRTFGHSHTKIATEARRSVLRRVLKTYSMRNPAVGYCQGLNFIVGFLTLGVDEETAFWLLAVICEDLFPGYHIPTM 222
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: D0MY33_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MY33_PHYIT)

HSP 1 Score: 103 bits (257), Expect = 2.060e-19
Identity = 64/200 (32.00%), Postives = 91/200 (45.50%), Query Frame = 3 
Query:  120 AHLRELIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTCGEPPREEPIEDAKDAAETLGAKETGVDHVRVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSM 719
            A L +L  +G+P  +RE  YV++SGAG K+   GP YYA LV                                                          AET+            +R+IE D++R F +  T++   +G   LRR+L+AYS  NP+VGYCQG+NFI   L+ +  EE  FWLL V CE+L+P Y++ +M
Sbjct:  370 ALLIQLARAGIPRHLRECAYVNLSGAGEKQANAGPSYYAELVK--------------------------------------------------------KAETM--------ETETFRQIELDIDRTFGHSGTKLCSESGRDQLRRILQAYSLRNPSVGYCQGLNFIVAFLMLIADEEVVFWLLSVFCEDLYPGYYSPAM 505
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: A0A329T1P5_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329T1P5_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.440e-19
Identity = 62/198 (31.31%), Postives = 89/198 (44.95%), Query Frame = 3 
Query:  126 LRELIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTCGEPPREEPIEDAKDAAETLGAKETGVDHVRVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSM 719
            L++L  +G+P  +RE  YV++SGA  K+   GP YY+ LV                                                          AET+            +R+IE D++R F +  T +   +G   LRR+LRAYS  NP+VGYCQG+NFI   L+ +  EE  FWLL V CE+L+P Y++ +M
Sbjct:  315 LKQLARAGIPRHLRERAYVNLSGASEKQANAGPNYYSDLVK--------------------------------------------------------KAETM--------ETETFRQIELDIDRTFGHSGTTICSESGRDQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLMADEEIVFWLLSVFCEDLYPGYYSPAM 448
[Close]
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Match: W2Q1N7_PHYPN (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=W2Q1N7_PHYPN)

HSP 1 Score: 102 bits (255), Expect = 3.230e-19
Identity = 62/198 (31.31%), Postives = 88/198 (44.44%), Query Frame = 3 
Query:  126 LRELIWSGVPTEMREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGRLQGLRLSRQPSHCERMKHDTCGEPPREEPIEDAKDAAETLGAKETGVDHVRVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGMNFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSM 719
            L +L  +G+P  +RE  Y ++SGA  K+   GP YYA LV                                                          AET+            +R+IE D++R F +  T +  ++G   LRR+LRAYS  NP+VGYCQG+NFI   L+ +  EE  FWLL V CE+L+P Y++ +M
Sbjct:  315 LMQLARAGIPRHLRERAYFNLSGASEKQANAGPNYYAELVK--------------------------------------------------------KAETM--------ETETFRQIELDIDRTFGHSGTTICSVSGRDQLRRILRAYSLRNPSVGYCQGLNFIVAFLMLMADEEVIFWLLSVFCEDLYPGYYSPAM 448
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10427.382.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5D6Y3V1_9STRA2.480e-2235.35Rab-GAP TBC domain-containing protein n=1 Tax=Pyth... [more]
A0A4D9D5J7_9STRA4.970e-2235.04Rab-GAP TBC domain-containing protein n=1 Tax=Nann... [more]
A0A4D9D5Q8_9STRA7.630e-2235.62Rab-GAP TBC domain-containing protein n=3 Tax=Mono... [more]
A0A6A3P359_9STRA4.370e-2031.82Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
A0A3F2RY14_9STRA8.930e-2032.82Rab-GAP TBC domain-containing protein n=1 Tax=Phyt... [more]
H3H2Z1_PHYRM1.390e-1932.84Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A8K1CN90_PYTOL2.020e-1930.50Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0MY33_PHYIT2.060e-1932.00Uncharacterized protein n=2 Tax=Phytophthora infes... [more]
A0A329T1P5_9STRA2.440e-1931.31Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
W2Q1N7_PHYPN3.230e-1931.31Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10427contigF-distichus_contig10427:5902..10514 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score109.8
Seed ortholog evalue1.7e-21
Seed eggNOG ortholog42099.EPrPV00000023809
KEGG koko:K20165,ko:K20166,ko:K20178
KEGG Pathwayko04138,map04138
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Growth hormone regulated TBC protein 1a. Source PGD
EggNOG OGs1MEF4@121069,COG5210@1,KOG2058@2759
COG Functional cat.U
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons11
Model size1790
Cds size681
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.881245-UTR-F-distichus_contig10427:5901..64321622928961.881245-UTR-F-distichus_contig10427:5901..6432Fucus distichus monoicousUTRF-distichus_contig10427 5902..6432 -
1690885083.6145523-UTR-F-distichus_contig10427:5901..64321690885083.6145523-UTR-F-distichus_contig10427:5901..6432Fucus distichus monoicousUTRF-distichus_contig10427 5902..6432 -
1622928961.9046795-UTR-F-distichus_contig10427:6639..67511622928961.9046795-UTR-F-distichus_contig10427:6639..6751Fucus distichus monoicousUTRF-distichus_contig10427 6640..6751 -
1690885083.6250567-UTR-F-distichus_contig10427:6639..67511690885083.6250567-UTR-F-distichus_contig10427:6639..6751Fucus distichus monoicousUTRF-distichus_contig10427 6640..6751 -
1622928961.9189174-UTR-F-distichus_contig10427:7057..71631622928961.9189174-UTR-F-distichus_contig10427:7057..7163Fucus distichus monoicousUTRF-distichus_contig10427 7058..7163 -
1690885083.6342247-UTR-F-distichus_contig10427:7057..71631690885083.6342247-UTR-F-distichus_contig10427:7057..7163Fucus distichus monoicousUTRF-distichus_contig10427 7058..7163 -
1622928961.941829-UTR-F-distichus_contig10427:7421..74811622928961.941829-UTR-F-distichus_contig10427:7421..7481Fucus distichus monoicousUTRF-distichus_contig10427 7422..7481 -
1690885083.6484241-UTR-F-distichus_contig10427:7421..74811690885083.6484241-UTR-F-distichus_contig10427:7421..7481Fucus distichus monoicousUTRF-distichus_contig10427 7422..7481 -
1622928961.9643948-UTR-F-distichus_contig10427:7609..77111622928961.9643948-UTR-F-distichus_contig10427:7609..7711Fucus distichus monoicousUTRF-distichus_contig10427 7610..7711 -
1690885083.6652508-UTR-F-distichus_contig10427:7609..77111690885083.6652508-UTR-F-distichus_contig10427:7609..7711Fucus distichus monoicousUTRF-distichus_contig10427 7610..7711 -
1622928961.9791918-UTR-F-distichus_contig10427:8087..81241622928961.9791918-UTR-F-distichus_contig10427:8087..8124Fucus distichus monoicousUTRF-distichus_contig10427 8088..8124 -
1690885083.6816456-UTR-F-distichus_contig10427:8087..81241690885083.6816456-UTR-F-distichus_contig10427:8087..8124Fucus distichus monoicousUTRF-distichus_contig10427 8088..8124 -
1622928962.1584036-UTR-F-distichus_contig10427:10353..105141622928962.1584036-UTR-F-distichus_contig10427:10353..10514Fucus distichus monoicousUTRF-distichus_contig10427 10354..10514 -
1690885083.7626235-UTR-F-distichus_contig10427:10353..105141690885083.7626235-UTR-F-distichus_contig10427:10353..10514Fucus distichus monoicousUTRF-distichus_contig10427 10354..10514 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928962.003724-CDS-F-distichus_contig10427:8124..82361622928962.003724-CDS-F-distichus_contig10427:8124..8236Fucus distichus monoicousCDSF-distichus_contig10427 8125..8236 -
1690885083.6915863-CDS-F-distichus_contig10427:8124..82361690885083.6915863-CDS-F-distichus_contig10427:8124..8236Fucus distichus monoicousCDSF-distichus_contig10427 8125..8236 -
1622928962.0201037-CDS-F-distichus_contig10427:8398..84901622928962.0201037-CDS-F-distichus_contig10427:8398..8490Fucus distichus monoicousCDSF-distichus_contig10427 8399..8490 -
1690885083.7094789-CDS-F-distichus_contig10427:8398..84901690885083.7094789-CDS-F-distichus_contig10427:8398..8490Fucus distichus monoicousCDSF-distichus_contig10427 8399..8490 -
1622928962.0481513-CDS-F-distichus_contig10427:8709..88951622928962.0481513-CDS-F-distichus_contig10427:8709..8895Fucus distichus monoicousCDSF-distichus_contig10427 8710..8895 -
1690885083.722338-CDS-F-distichus_contig10427:8709..88951690885083.722338-CDS-F-distichus_contig10427:8709..8895Fucus distichus monoicousCDSF-distichus_contig10427 8710..8895 -
1622928962.0739026-CDS-F-distichus_contig10427:9256..94411622928962.0739026-CDS-F-distichus_contig10427:9256..9441Fucus distichus monoicousCDSF-distichus_contig10427 9257..9441 -
1690885083.7316725-CDS-F-distichus_contig10427:9256..94411690885083.7316725-CDS-F-distichus_contig10427:9256..9441Fucus distichus monoicousCDSF-distichus_contig10427 9257..9441 -
1622928962.127607-CDS-F-distichus_contig10427:9809..98841622928962.127607-CDS-F-distichus_contig10427:9809..9884Fucus distichus monoicousCDSF-distichus_contig10427 9810..9884 -
1690885083.744806-CDS-F-distichus_contig10427:9809..98841690885083.744806-CDS-F-distichus_contig10427:9809..9884Fucus distichus monoicousCDSF-distichus_contig10427 9810..9884 -
1622928962.144598-CDS-F-distichus_contig10427:10322..103531622928962.144598-CDS-F-distichus_contig10427:10322..10353Fucus distichus monoicousCDSF-distichus_contig10427 10323..10353 -
1690885083.7545748-CDS-F-distichus_contig10427:10322..103531690885083.7545748-CDS-F-distichus_contig10427:10322..10353Fucus distichus monoicousCDSF-distichus_contig10427 10323..10353 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10427.382.1prot_F-distichus_contig10427.382.1Fucus distichus monoicouspolypeptideF-distichus_contig10427 8125..10353 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10427.382.1

>prot_F-distichus_contig10427.382.1 ID=prot_F-distichus_contig10427.382.1|Name=mRNA_F-distichus_contig10427.382.1|organism=Fucus distichus monoicous|type=polypeptide|length=227bp
MREEVYVSVSGAGWKRDRYGPGYYASLVTGCLHLEDIAATNKGEMNGSGR
LQGLRLSRQPSHCERMKHDTCGEPPREEPIEDAKDAAETLGAKETGVDHV
RVWREIEADLERVFINGRTRVNELTGVSALRRLLRAYSCHNPTVGYCQGM
NFIAGLLLEVVSEETAFWLLGVICENLHPEYHTKSMLGASPQRPRSEGAS
KAPWSDSRRGDAVGNQADAVADRGVH*
back to top

mRNA from alignment at F-distichus_contig10427:5902..10514-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10427.382.1 ID=mRNA_F-distichus_contig10427.382.1|Name=mRNA_F-distichus_contig10427.382.1|organism=Fucus distichus monoicous|type=mRNA|length=4613bp|location=Sequence derived from alignment at F-distichus_contig10427:5902..10514- (Fucus distichus monoicous)
TACAGCAGTCCTCGCGACGAAAGCGATGGAAGTCGGAGGAGGGACGGAGA
TCGTGGTCTAGGTTATTGGAGAACTGCGGATCCGTCGATCCAGTCCCCGG
GAGCGCGAAACACTGGGGGGCTCATCTCCGGGAGTTGATCTGGAGCGGCG
TACCAACAGAAATGAGAGAAGAAGTCTACGTCTCCGTTTCGGGTGCGTGA
GGAATACAGTATATTACTAGATGTTTTTACCACAGTATCCCCTCGTGACG
CGGTTTTGAGTGGCACTTGCATGCTTCGCGACTGACGATGTCTGACGATG
GAACCCTCTGACGATGGAACCCTCTTTTGTGTGTGAAAGTTATGATATGA
CTCACGACGTCTCTCACTCGGTTGGGTTATTTTGTCGATATAATTTGACT
TTGTTTTGACGCGTCGTCCAACGCCCCCGACTCTTTTAATAGGAAGGAGA
CCAACTGAATTGACTTTACGCGTTCCAAGCGTGTTGAAGTGTATCAAAGT
GTATCGCTTGCTATCACAATTAGGTAAAGTTTTGTCTGTGGGCAGACCAA
TAATCCGGATCGTTTTCGCGCTCGTGTACAGCTTCGAACGCGAAGCGTGT
TTCAATACTGTCTTTGTCCTTGAATCGCAGGCGCGGGCTGGAAGCGTGAT
CGTTACGGGCCAGGATACTACGCGTCACTGGTAACTGGCTGCCTCCACCT
GGAAGGTAAGGAGCGTGACGGGCGGCGGGGAAAGTCCAGGCTTGGCAGGA
GCCGTCTAGCTTCGGTGCCATAAACTTGAAACCAGGGGGGGGGGTTCACC
TTAACCAGCGCTGGTTCCTAACCATAAAGCCCAAATCTATGTCGCCAGCG
GTGGGATTAAGTCTACATTAACTTTGTCATAAGGGTCGCCAAATGGGCGA
ATAAAAGGAGTCAGGGTCACACATACGTACCTACGCCCATGGTGTTCCAC
GACGATCTTACGATGCATCTTACCATGCAATACTCTCAGGATGATTTTGA
CACAGCTTTGAGTGACAACCGACCTCGACGTGCGAATATTGATGATATGT
ATGGATGTTGTAACGACGTGTAGATATCGCGGCGACCAACAAGGGGGAGA
TGAACGGGTCGGGACGATTACAAGGTCTTCGCCTCTCCCGGCAACCTTCG
CATTGTGAACGCATGAAGCACGATACTTGTGGCGAACCGCCCCGAGAAGA
ACCAATTGAAGACGCTAAAGACGCTGCCGAGACCCTTGGGGCGAAGGAGA
CTGGCGTGGTAAGTTTGGACGCATCGCTTTGGCTTCACCTCTATCGGCGT
CATCGCAATACTGGTGATCGTGAGGGATGCGTGCGGTGTTGCCAGAGTGC
GTTGCGTTTGTTCAGTTGACGTGTATGCCCCTTAGTCACTATCAAAGCCA
GTAATAAACTTGATTGCGCTGTGACGCCAAACTTATCCCCTGTTCACGTT
TCGTACTGCACCGTATGTGTACCATATAGTCTATACATTTGGTTGGTGGT
CCCCGGGGTGATTGATAAATAGGACACGGGGGGCGTATTTCACACCTATT
AGAGCTGTCTTTTGAGTGGGAGTTCGACTGAAGAGGCTTTGTTTTGTTTT
GTCGCCTGTTTTATTATAGGATCACGTCCGAGTGTGGCGAGAAATCGAGG
CAGACCTGGAGAGAGTTTTTATTAACGGAAGGACACGAGTCAACGAATTG
ACAGGCGTCTCAGCCCTGCGGAGACTCCTCCGAGCCTATTCATGCCACAA
TCCAACTGTGGGTTACTGCCAAGGCATGAACTTCATAGCGGGGCTGTTGT
TAGAGGTGAGCTTTTTACGCAGCATTTGTTCGGGAGCCTCGGACGAGATG
AGACTTGACTCAAATCGCCAGACTTCCTACAGTTCGTATACCAGGCGACA
TGCGGTTGTGTTTTTGAACTTCCTTTTTTTCAGCAAAAATGTGTATGGCG
CCTCCCTCCCTCATGTATGCGACCACTCTTTTACGGTATCATCCCACTAT
CATGCTACAATATCGGTTCACCAGGTGGTGTCAGAGGAAACGGCGTTCTG
GCTGCTGGGCGTCATTTGCGAAAATCTGCATCCTGAGTACCACACGAAAT
CGATGCTTGGAGCAAGGTGAGGAACGGTGTTCAGAGACATCACCGAAAGC
TCCAGCTTGTAGAGAAAGGACTTTTGACGTGATTTGCATCATTCGCCCGT
AGCACCCGAAGCAGCGGCGCAACGATCATTTCTTTTCCAACTAGCGTCTT
GTCCTCGGCACCAGGTCTGATATCGCAGCCCTCAAAGACCTCGTTCAGAG
GGTGCTTCCAAGGCTCCATGGTCGGACTCGCGACGTGGGGATGCCGTTGG
AAATCAAGCTGACGCAGTGGCTGATAGGGGGGTTCATTAACTGCTTCCCA
GCAAACACTGCGTTGAGGATACTTGAGGTAAGCGTCAACCGCGCTGGCCC
TCGGTTCCATACTGCTGGCCTGAAATCGTTTTGCGACGTCTTCCATGCGA
GCAGATGGAGGAGTGCAAGGATTCCACGGCCGCCGCGCCATCCTGAGGCT
TACGTTGACCTCACGCACATTCGCTGTGGTATCTCCCGATGGCGTTTCGG
TTCTCAACTAGACACACTTTGCCTCTTGTCGACGGTGTCGCCCGAACCGT
GCCCCCGCCCCTGCCCCCATATATTCTAGATGGAACCTTCCACCAACGAC
GCTCACCCGATAACATTTTATTATATTTTACGTTGGTGCGTGCTCAAGGG
TCTCATCCCCTTGATTGACCGAGTCTCATGTACTGAAACACATTTTCTCG
CAGATTTCTTTTCTTGAGGGCTCCGATGTCTACCTGGCCACCGTGCTGGC
TTTTCTTAGACTTCATGAGGTCGAGATACTCAAGGGCGAAGACATAGCTG
AAGTGGTGAGATAATATACAACAGGGTCCTCGAGTCTTTTTCGAGCCCTG
ACTCCCTTAAGAGTACCAGTGTTGCACCTTTCGGGGCTGCTCCTCACCTC
CCATACACTTCGGGTCGCTTTTGTTGTTGTCAGGTGTGCACCCTAGACCT
GGCGCAGGCAGGCATGTACGATGCCGATATTCTCCTCCTACAGGTGAGAG
GAACAATGGCAAGTGTCGTCATAGTCGTTGGTATACACCCTCTCGCTCGC
GCGGTTACTTAACAGGTATTTTACGTCTATGCGACAGCTTCTCGCGGATG
GCATTGATCGCGTGTTCTGCACGTCTGGATGTTCGCCGTATTTGCGTGAT
GAACGCAACAGCAACAGAGGTCGTGTCGACTCTCGATTCCCGGGAAGAGG
AGCAACAGGGTTGGTTCACTTCTGAAAGGCTTTCACCCACCGTTCGCCCA
GGTGTGGCGAGAACTTGTCTTGTGGAGAGGAGAGATTCGCTCAGCGCGCC
AGAGGCACCGGATCCGCATTAGACAAGAGGATGGGCGTGTATATCACCCC
GCGAAAGGTGAGTCGCCGCGCTGCCCATTGCATGATGGGATATTGACGCT
GTCCTCCATTGATGGTTGCGTGGATTCGTGTAGCCAAGGGCCCCTGTCGG
CAATCTTCTGACTTGTTCATCGATTATTTATTTCAGTATAAAAGTTGGTT
TGATATGTTGTATCATCCGGCATGCCACGTTCCGTCGCTTTGAAATGCTC
AGAATACACAGCACCAATCGCCTGTGTTGAATCATGAAAAGAGGTTAAAC
TGCGAAGTGCTGTCGTCTTGTCCCTGATGCGCTTTATACTTGACTGCAAT
ACTCTGTTGACAGAGCTACTGCTACAGCCCCCCCTTCGGGCACGCACTTC
TCCCACTAATGGTAGGTGATTGTTCAACCAATCATCGGGGTGGATGGCTG
CAAGGGAGGACGTCCGTGGGATCTGGTGAGTATTATATGAGGGATAGTAC
ACATTTCCGAAATGATATCGTATGATGTTGCTCTAGACAAAAAATGCCTT
TGCTCTAGACAAAAAATGCCTTTGCTCTAGACAAAAAATATCTTTGCTCG
TGTCACGTGTTGCTTGAGCAAGTGATATGTTGACTTATTCGATGTAATCT
CTCACTGTTGCAATTTGATTTGTCAATACAAGGAGGCTCAGCCTGGCTGC
TGGTGGTGCCCAAGCCCTTGGCTGGTCACCTGCAGGAAATATTGTCTAGT
CTCAGCAAAAGAGCTCTCACTACCAAGCGCGACTTAGACGGAAACCTGGC
CGCACACCCCTCGCTGGCGCCTTTGGTTGTAGGGGGTATCAGGTGGATTT
TAGGATGGAAAGTGTTCCGAGAGGTAAAATGATTCATTTTGGTAATTCAT
GCCTCCTCTTTTTGCCGTTTCATTGGGATACTGCAACTAGTGTCTAAAAG
ACCTAAGCGCTCACCGCACATCCTACCAAATCGAGGCATCGCTACTTCCT
TTAAAATAGGGAGCTATTTCATAGTGCTGTATTTATTGTACAAGAATTAG
TATGATTAGTAGATAATATTATTATTAGTACATCATTTCACCCCGCCGTG
GTTCGACTTAGACGGAAACCTGGCTGGCGCCTTTGGTGGTAGGAGGTATC
AGATGTTTGTTAGGATTGACGCTGTTCGAGACGTAAAATGATTCATCTTG
GTAATTCATGCCT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig10427:5902..10514-

>mRNA_F-distichus_contig10427.382.1 ID=mRNA_F-distichus_contig10427.382.1|Name=mRNA_F-distichus_contig10427.382.1|organism=Fucus distichus monoicous|type=CDS|length=1362bp|location=Sequence derived from alignment at F-distichus_contig10427:5902..10514- (Fucus distichus monoicous)
ATGAGAGAAGAAGTCTACGTCTCCGTTTCGGATGAGAGAAGAAGTCTACG
TCTCCGTTTCGGGCGCGGGCTGGAAGCGTGATCGTTACGGGCCAGGATAC
TACGCGTCACTGGTAACTGGCTGCCTCCACCTGGAAGGCGCGGGCTGGAA
GCGTGATCGTTACGGGCCAGGATACTACGCGTCACTGGTAACTGGCTGCC
TCCACCTGGAAGATATCGCGGCGACCAACAAGGGGGAGATGAACGGGTCG
GGACGATTACAAGGTCTTCGCCTCTCCCGGCAACCTTCGCATTGTGAACG
CATGAAGCACGATACTTGTGGCGAACCGCCCCGAGAAGAACCAATTGAAG
ACGCTAAAGACGCTGCCGAGACCCTTGGGGCGAAGGAGACTGGCGTGATA
TCGCGGCGACCAACAAGGGGGAGATGAACGGGTCGGGACGATTACAAGGT
CTTCGCCTCTCCCGGCAACCTTCGCATTGTGAACGCATGAAGCACGATAC
TTGTGGCGAACCGCCCCGAGAAGAACCAATTGAAGACGCTAAAGACGCTG
CCGAGACCCTTGGGGCGAAGGAGACTGGCGTGGATCACGTCCGAGTGTGG
CGAGAAATCGAGGCAGACCTGGAGAGAGTTTTTATTAACGGAAGGACACG
AGTCAACGAATTGACAGGCGTCTCAGCCCTGCGGAGACTCCTCCGAGCCT
ATTCATGCCACAATCCAACTGTGGGTTACTGCCAAGGCATGAACTTCATA
GCGGGGCTGTTGTTAGAGGATCACGTCCGAGTGTGGCGAGAAATCGAGGC
AGACCTGGAGAGAGTTTTTATTAACGGAAGGACACGAGTCAACGAATTGA
CAGGCGTCTCAGCCCTGCGGAGACTCCTCCGAGCCTATTCATGCCACAAT
CCAACTGTGGGTTACTGCCAAGGCATGAACTTCATAGCGGGGCTGTTGTT
AGAGGTGGTGTCAGAGGAAACGGCGTTCTGGCTGCTGGGCGTCATTTGCG
AAAATCTGCATCCTGAGTACCACACGAAATCGATGCTTGGAGCAAGGTGG
TGTCAGAGGAAACGGCGTTCTGGCTGCTGGGCGTCATTTGCGAAAATCTG
CATCCTGAGTACCACACGAAATCGATGCTTGGAGCAAGCCCTCAAAGACC
TCGTTCAGAGGGTGCTTCCAAGGCTCCATGGTCGGACTCGCGACGTGGGG
ATGCCGTTGGAAATCAAGCTGACGCAGTGGCTGATAGGGGGGTTCATTAA
CCCTCAAAGACCTCGTTCAGAGGGTGCTTCCAAGGCTCCATGGTCGGACT
CGCGACGTGGGGATGCCGTTGGAAATCAAGCTGACGCAGTGGCTGATAGG
GGGGTTCATTAA
back to top