mRNA_F-distichus_contig104254.379.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig104254.379.1
Unique NamemRNA_F-distichus_contig104254.379.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig104254.379.1 vs. uniprot
Match: D7FL28_ECTSI (Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL28_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 9.880e-19
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 3 
Query:  138 RAIGSTEKEEPAAATCVGHGMTLVGCLRLILLVPSSPADPDLKPALQKESLEKRLAKLIRELTVLRWSLRIQGEGDLSPEMVPLLKQVR 404
            RA G T + E +A    G GM L+GCL+L+LL+PSSP DP LKPAL++E L +RL     ELTV RWS+R++G GD+SPEM+PLL+Q R
Sbjct: 2744 RAEGPTARVEASA----GLGMALLGCLKLVLLLPSSPVDPGLKPALKRELLGERLGGYRGELTVRRWSMRLEGGGDVSPEMLPLLQQAR 2828
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BLAST of mRNA_F-distichus_contig104254.379.1 vs. uniprot
Match: A0A6H5JCJ9_9PHAE (Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCJ9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 5.760e-18
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 3 
Query:  138 RAIGSTEKEEPAAATCVGHGMTLVGCLRLILLVPSSPADPDLKPALQKESLEKRLAKLIRELTVLRWSLRIQGEGDLSPEMVPLLKQVR 404
            +A G T + E +A    G GM L+GCL+L+LL PSSP DP LKPAL++E L +RL     ELTV RWSLR++G GD+SPEM+PLL+Q R
Sbjct: 1889 KAEGPTARVEASA----GLGMALLGCLKLVLLPPSSPVDPGLKPALKRELLGERLDGYRGELTVRRWSLRLEGGGDVSPEMLPLLQQAR 1973
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig104254.379.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FL28_ECTSI9.880e-1957.30Midasin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
A0A6H5JCJ9_9PHAE5.760e-1857.30Midasin n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig104254contigF-distichus_contig104254:399..1994 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score65.5
Seed ortholog evalue2.2e-08
Seed eggNOG ortholog2880.D7FL28
KEGG koko:K14572
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity
EggNOG OGsCOG5271@1,KOG1808@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009
Exons2
Model size1099
Cds size399
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig104254.379.1prot_F-distichus_contig104254.379.1Fucus distichus monoicouspolypeptideF-distichus_contig104254 765..1660 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.5494344-UTR-F-distichus_contig104254:398..7641622928961.5494344-UTR-F-distichus_contig104254:398..764Fucus distichus monoicousUTRF-distichus_contig104254 399..764 -
1690885083.4135022-UTR-F-distichus_contig104254:398..7641690885083.4135022-UTR-F-distichus_contig104254:398..764Fucus distichus monoicousUTRF-distichus_contig104254 399..764 -
1622928961.586373-UTR-F-distichus_contig104254:1660..19941622928961.586373-UTR-F-distichus_contig104254:1660..1994Fucus distichus monoicousUTRF-distichus_contig104254 1661..1994 -
1690885083.4475641-UTR-F-distichus_contig104254:1660..19941690885083.4475641-UTR-F-distichus_contig104254:1660..1994Fucus distichus monoicousUTRF-distichus_contig104254 1661..1994 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928961.5627337-CDS-F-distichus_contig104254:764..11201622928961.5627337-CDS-F-distichus_contig104254:764..1120Fucus distichus monoicousCDSF-distichus_contig104254 765..1120 -
1690885083.4238403-CDS-F-distichus_contig104254:764..11201690885083.4238403-CDS-F-distichus_contig104254:764..1120Fucus distichus monoicousCDSF-distichus_contig104254 765..1120 -
1622928961.5752687-CDS-F-distichus_contig104254:1617..16601622928961.5752687-CDS-F-distichus_contig104254:1617..1660Fucus distichus monoicousCDSF-distichus_contig104254 1618..1660 -
1690885083.4319863-CDS-F-distichus_contig104254:1617..16601690885083.4319863-CDS-F-distichus_contig104254:1617..1660Fucus distichus monoicousCDSF-distichus_contig104254 1618..1660 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig104254.379.1

>prot_F-distichus_contig104254.379.1 ID=prot_F-distichus_contig104254.379.1|Name=mRNA_F-distichus_contig104254.379.1|organism=Fucus distichus monoicous|type=polypeptide|length=133bp
MVAPNSRRRRFVSRDGAAAKASSREAIERPPTRPSFHALFKDVQSFLKSP
GDPGRLTHLAEGLAQTSTTIGDSIVNTSCPHECLDRSNGGGTMNLAVLLQ
KEATWQETAGAFTVVTGICDAVGTARVGSRLL*
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mRNA from alignment at F-distichus_contig104254:399..1994-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig104254.379.1 ID=mRNA_F-distichus_contig104254.379.1|Name=mRNA_F-distichus_contig104254.379.1|organism=Fucus distichus monoicous|type=mRNA|length=1596bp|location=Sequence derived from alignment at F-distichus_contig104254:399..1994- (Fucus distichus monoicous)
TACCTTAGTTTGGGTTAGCATGTGACCACGGAAATTCGTTTCTTTGCCTT
GAAGAGTAAGAAAGAGAAGGTACTGGATAGAGGTCAGAACGGTTTTTAAT
GTGAAGACAACAACAACCCGCTGTTGAAACCCTTGCCCGGGCCATCGGGT
CCACGGAGAAAGAAGAGCCCGCGGCGGCGACATGTGTCGGTCACGGCATG
ACATTAGTCGGATGCCTTCGGCTGATCCTGCTTGTGCCCTCTTCTCCAGC
GGATCCTGATTTGAAGCCGGCGCTGCAGAAGGAGTCATTGGAAAAAAGGC
TGGCGAAACTGATTCGGGAGCTGACGGTGCTTCGATGGTCGCTCCGAATT
CAAGGCGAAGGAGATTTGTCTCCCGAGGTGAAGTTTCGAATCTGATACTG
ATACTAAAGGTGTACGATGACACTTGTCATACTGAACAAGATGTTCGCCA
ATTTTTCCTTCTCATTTTAAAAAACGTTTTTGACTGAAATTTCCTCTTCA
TCTGAGGCGTTGAGTTTCGAATGTCCAAAAGCAAGCAACGTCACCGCTTT
CGAGAACTCCCAGGCGGACCCCATGGTGGCTTTGGCGAGATCAGTCTCAT
TGTCGGTTCGCAGTCTTGCAAGATTACTCAATAGAGATTAACCACTACGT
ATGCCCTCGAATGACTGTTGCTGCCAATCTTTTGATTTGACCCAGTTTAC
GGTTGGGGCGTATGGTGGAAAATGTGTCTGTTTTGCCGATGTCGTGTTTT
ATCATTACTGTAATTGTGTTGTTTTTTTACCCGTCGGGAATTTGTTGGTC
GCGCAAGTCTATTTCCTTGCGATTTATTCTCTGTTCGCGTGCGACGTCTG
CCGTTTTGAAATGCGTGCTCCCAGATGGTGCCGCTGCTAAAGCAAGTTCG
CGAGAGGCCATTGAGCGCCCTCCAACCCGCCCGTCGTTCCACGCTCTCTT
CAAAGACGTCCAGTCCTTTTTGAAAAGCCCTGGAGATCCTGGCCGCCTGA
CCCACCTCGCCGAAGGTCTGGCGCAGACCTCGACTACTATCGGTGATAGC
ATCGTGAATACGTCATGCCCCCACGAATGTCTCGATCGTAGTAATGGAGG
TGGAACGATGAACTTGGCCGTGCTGCTGCAGAAGGAAGCAACCTGGCAAG
AGACCGCAGGAGCGTTTACCGTGGTGACTGGTATCTGCGATGCAGTCGGA
ACCGCGCGTGTTGGCTCTCGCCTTCTATAGCCTCATCCGCAGCAGAGATC
GGCCGCCGTACCCCGCGATATTGTTCTGGGGAGAAAAGTGTTGTAGACGA
TGGATATTCTTTGGCTCAATTACAGGAGCTATTGCTAGCCTTCCCGTTGA
CTAGTGGATGTTTACGATGGCATCAGCCATTTATTGAAGGGGGTGGACTT
GTCGATATTCTTGGGCCCGTCTCCCTCGACTGCCTGGACAAGGACAACAA
AGATTTGTCGGGCGTTCAACACATGGCGGTCTTACAGGTAATCTTGAGAC
TATCGTGCGTGGTCTCTTTTTTCACTTTTTTCTTCCCATGTTCACTTATC
CCATTTTAGGAACTACCGGTATTATGTTAACGGTGTTGTAACTTTT
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Coding sequence (CDS) from alignment at F-distichus_contig104254:399..1994-

>mRNA_F-distichus_contig104254.379.1 ID=mRNA_F-distichus_contig104254.379.1|Name=mRNA_F-distichus_contig104254.379.1|organism=Fucus distichus monoicous|type=CDS|length=798bp|location=Sequence derived from alignment at F-distichus_contig104254:399..1994- (Fucus distichus monoicous)
ATGGTCGCTCCGAATTCAAGGCGAAGGAGATTTGTCTCCCGAGATGGTCG
CTCCGAATTCAAGGCGAAGGAGATTTGTCTCCCGAGATGGTGCCGCTGCT
AAAGCAAGTTCGCGAGAGGCCATTGAGCGCCCTCCAACCCGCCCGTCGTT
CCACGCTCTCTTCAAAGACGTCCAGTCCTTTTTGAAAAGCCCTGGAGATC
CTGGCCGCCTGACCCACCTCGCCGAAGGTCTGGCGCAGACCTCGACTACT
ATCGGTGATAGCATCGTGAATACGTCATGCCCCCACGAATGTCTCGATCG
TAGTAATGGAGGTGGAACGATGAACTTGGCCGTGCTGCTGCAGAAGGAAG
CAACCTGGCAAGAGACCGCAGGAGCGTTTACCGTGGTGACTGGTATCTGC
GATGCAGTCGGAACCGCGCGTGTTGGCTCTCGCCTTCTATAGATGGTGCC
GCTGCTAAAGCAAGTTCGCGAGAGGCCATTGAGCGCCCTCCAACCCGCCC
GTCGTTCCACGCTCTCTTCAAAGACGTCCAGTCCTTTTTGAAAAGCCCTG
GAGATCCTGGCCGCCTGACCCACCTCGCCGAAGGTCTGGCGCAGACCTCG
ACTACTATCGGTGATAGCATCGTGAATACGTCATGCCCCCACGAATGTCT
CGATCGTAGTAATGGAGGTGGAACGATGAACTTGGCCGTGCTGCTGCAGA
AGGAAGCAACCTGGCAAGAGACCGCAGGAGCGTTTACCGTGGTGACTGGT
ATCTGCGATGCAGTCGGAACCGCGCGTGTTGGCTCTCGCCTTCTATAG
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