mRNA_F-distichus_contig103768.336.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103768.336.1
Unique NamemRNA_F-distichus_contig103768.336.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: D7G248_ECTSI (Protein kinase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G248_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 1.650e-40
Identity = 76/85 (89.41%), Postives = 80/85 (94.12%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQVFDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQ 255
            P +AGLF VNDRGVRVMLLTSIP+Y KRLED VVNDQVF+PLCAGFTDAAAPLRELTLKSMVAFT QLSEKNMN+KLIKHLARLQ
Sbjct:  312 PTIAGLFAVNDRGVRVMLLTSIPSYGKRLEDAVVNDQVFEPLCAGFTDAAAPLRELTLKSMVAFTQQLSEKNMNDKLIKHLARLQ 396
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: A0A835ZEQ5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEQ5_9STRA)

HSP 1 Score: 118 bits (295), Expect = 3.200e-29
Identity = 59/85 (69.41%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQVFDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQ 255
            P+L  LF +NDRGVR MLL+ + A A RL+   VN ++FDPLCAGFTDAAA LRELTLKSMV FT +LS+KNMN+KLI+HLARLQ
Sbjct:  356 PLLVALFTMNDRGVRAMLLSKVDAIAPRLDAATVNARLFDPLCAGFTDAAAQLRELTLKSMVVFTDKLSDKNMNDKLIRHLARLQ 440
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: A0A7S3XI66_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XI66_HETAK)

HSP 1 Score: 94.7 bits (234), Expect = 1.290e-21
Identity = 44/85 (51.76%), Postives = 63/85 (74.12%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQVFDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQ 255
            P LA L+ + DRGVRV LL  +P YA +L++ +VN  +FD +C GF D +  +RE+TLKSM+ F   LS+KN+N+KL+K+L+RLQ
Sbjct:  139 PALAALYGLGDRGVRVALLGGLPHYADKLDEALVNGSIFDQVCMGFQDNSPAMREVTLKSMIHFVDHLSDKNLNDKLVKYLSRLQ 223
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: A0A7S2EPS3_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EPS3_TRICV)

HSP 1 Score: 86.7 bits (213), Expect = 1.110e-18
Identity = 46/85 (54.12%), Postives = 59/85 (69.41%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQVFDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQ 255
            PV + LF VNDRGVR  LL  +P  A RL+   +N  VF+P+C+GF+D++APLRELTLKS V     LS  N+ EKL ++L RLQ
Sbjct:    9 PVASALFQVNDRGVRGALLGRVPLLASRLDAATLNASVFEPMCSGFSDSSAPLRELTLKSTVVLVPHLSPANL-EKLTRYLVRLQ 92
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: A0A421EVT5_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A421EVT5_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 8.030e-17
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQV-FDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQVL 261
            P++  LF  NDR VRV LL  +  +A   + K+VN  V FD LC+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQ+L
Sbjct:  192 PIIIKLFSCNDRAVRVQLLQMMEKFAVHFDAKLVNSAVVFDNLCSGFTDAAPVLRELTVKSMLHIADKLSDGNLNNRVMKYFAKLQIL 279
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: A0A3F2RNB7_9STRA (Protein kinase domain-containing protein n=5 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RNB7_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.450e-16
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQV-FDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQVL 261
            P++  LF  NDR VRV LL  +  +A   + K+VN  V FD LC+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQ+L
Sbjct:  387 PIIIKLFSCNDRAVRVQLLQMMEKFAVHFDAKLVNSAVVFDNLCSGFTDAAPVLRELTVKSMLHIADKLSDGNLNNRVMKYFAKLQIL 474
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: H3HB87_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HB87_PHYRM)

HSP 1 Score: 82.0 bits (201), Expect = 2.510e-16
Identity = 43/88 (48.86%), Postives = 61/88 (69.32%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQV-FDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQVL 261
            P++  LF  NDR VRV LL  +  +A   + K+VN  V FD +C+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQVL
Sbjct:   80 PIIIKLFSCNDRAVRVQLLQMMEKFAVHFDAKLVNSSVIFDNMCSGFTDAAPVLRELTVKSMLHIADKLSDGNLNNRVMKYFAKLQVL 167
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: A0A662WQ41_9STRA (Protein kinase domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WQ41_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 4.790e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQV-FDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQV 258
            P++  LF  NDR VRV LL  +  +    + K+VN  V FD LC+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQV
Sbjct:  456 PIIVKLFSCNDRAVRVQLLQMMEKFTVHFDAKLVNSSVIFDNLCSGFTDAAPVLRELTVKSMLHIADKLSDSNLNNRVMKYFAKLQV 542
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: A0A2P4X437_9STRA (ATP-dependent DNA helicase 2 subunit n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X437_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 6.820e-16
Identity = 42/87 (48.28%), Postives = 59/87 (67.82%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQV-FDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQV 258
            P++  LF  NDR VRV LL  +  +    + K+VN  V FD LC+GFTDAA  LRELT+KSM+    +LS+ N+N +++K+ A+LQV
Sbjct: 1297 PIIIKLFSCNDRAVRVQLLQMMEKFTVHFDAKLVNSSVVFDNLCSGFTDAAPVLRELTVKSMLHIADKLSDSNLNNRVMKYFAKLQV 1383
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BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Match: A0A7S2U6Q9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U6Q9_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 1.240e-15
Identity = 40/85 (47.06%), Postives = 58/85 (68.24%), Query Frame = 1 
Query:    1 PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQVFDPLCAGFTDAAAPLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQ 255
            PV+  +F ++DRG+R  LLT +    K+L    +N  VF+P+C+GF+D+AA LRELTLKS +     LS  N+ EKL+++L RLQ
Sbjct:  382 PVIEKMFAISDRGIRGALLTKVSLLEKQLTPAKLNSAVFEPMCSGFSDSAAQLRELTLKSTIVLVPHLSPANL-EKLVRYLVRLQ 465
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103768.336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G248_ECTSI1.650e-4089.41Protein kinase domain-containing protein n=2 Tax=E... [more]
A0A835ZEQ5_9STRA3.200e-2969.41Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A7S3XI66_HETAK1.290e-2151.76Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2EPS3_TRICV1.110e-1854.12Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A421EVT5_9STRA8.030e-1748.86Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3F2RNB7_9STRA2.450e-1648.86Protein kinase domain-containing protein n=5 Tax=P... [more]
H3HB87_PHYRM2.510e-1648.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A662WQ41_9STRA4.790e-1648.28Protein kinase domain-containing protein n=2 Tax=N... [more]
A0A2P4X437_9STRA6.820e-1648.28ATP-dependent DNA helicase 2 subunit n=2 Tax=Phyto... [more]
A0A7S2U6Q9_9STRA1.240e-1547.06Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103768contigF-distichus_contig103768:689..1837 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score151.8
Seed ortholog evalue1.5e-34
Seed eggNOG ortholog2880.D7G248
Preferred nameCEX1
KEGG koko:K08876
Hectar predicted targeting categoryother localisation
GOsGO:0000049,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0006403,GO:0006405,GO:0006409,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0031503,GO:0033036,GO:0034613,GO:0042886,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0050657,GO:0050658,GO:0051031,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0070727,GO:0071166,GO:0071426,GO:0071431,GO:0071702,GO:0071705,GO:0097064,GO:0097159,GO:1901363
EggNOG free text desc.protein phosphorylation
EggNOG OGsKOG1243@1,KOG1243@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01001,ko03016
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928957.2676048-CDS-F-distichus_contig103768:688..8381622928957.2676048-CDS-F-distichus_contig103768:688..838Fucus distichus monoicousCDSF-distichus_contig103768 689..838 -
1690885081.6917827-CDS-F-distichus_contig103768:688..8381690885081.6917827-CDS-F-distichus_contig103768:688..838Fucus distichus monoicousCDSF-distichus_contig103768 689..838 -
1622928957.2966177-CDS-F-distichus_contig103768:1726..18371622928957.2966177-CDS-F-distichus_contig103768:1726..1837Fucus distichus monoicousCDSF-distichus_contig103768 1727..1837 -
1690885081.7100806-CDS-F-distichus_contig103768:1726..18371690885081.7100806-CDS-F-distichus_contig103768:1726..1837Fucus distichus monoicousCDSF-distichus_contig103768 1727..1837 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103768.336.1prot_F-distichus_contig103768.336.1Fucus distichus monoicouspolypeptideF-distichus_contig103768 689..1837 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103768.336.1

>prot_F-distichus_contig103768.336.1 ID=prot_F-distichus_contig103768.336.1|Name=mRNA_F-distichus_contig103768.336.1|organism=Fucus distichus monoicous|type=polypeptide|length=87bp
PVLAGLFVVNDRGVRVMLLTSIPAYAKRLEDKVVNDQVFDPLCAGFTDAA
APLRELTLKSMVAFTGQLSEKNMNEKLIKHLARLQVL
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mRNA from alignment at F-distichus_contig103768:689..1837-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103768.336.1 ID=mRNA_F-distichus_contig103768.336.1|Name=mRNA_F-distichus_contig103768.336.1|organism=Fucus distichus monoicous|type=mRNA|length=1149bp|location=Sequence derived from alignment at F-distichus_contig103768:689..1837- (Fucus distichus monoicous)
CCCGTCCTGGCCGGACTCTTTGTCGTAAACGATCGAGGCGTCAGGGTGAT
GCTCCTCACGAGCATCCCCGCCTACGCCAAGCGGCTGGAGGACAAGGTGG
TGAATGACCAGGTACTGACTACATTGCACCCTATACTGTACTGTACTGTA
CCCTGTACTGTAATCTACTCAGCCCTATACTGTCATGTACTGTACCCTAT
ACTGTAATGTACTACGCCCTATACTTAACTGTACTGTGCCCGATACTGTA
ATGTACTGTACCCTATACCGTAATGAACCGTACCCTATACTCGACAGTAC
TGTACCCTATTGTGTAATGTACTGTACGGTATACTGTACTCTACTGTACC
TATACTTTACTGTACTGTACCCTATACTGTACAGTGCTGTACCCTATATA
GTTGGGAGAAAAAACATATCGCTCTGCAATAATTTCTTCATCGTACACAT
CATTTTTTGTTTTGATTTCTTTATAAATACCTGATCAGAGCTATAGAAAA
TAAGAAGAAAAGTAACAGTCTTTTCAGAAAGATTTCCGTTTTTTTCCGTT
TTTTTCCGTTTTGTTTTTTCTTCTTTTTCTTTATTCGTTATTATTATTCC
CGGCTTGATACGCAAGCTCGAGCTTGCTTGGTTACCCAAGAATCTTTGCG
CCCCGTTTTTATATGAGTTTCTTCTGCGAAAACAATTACGACTAACAAAA
ATAAATGGGCTGGGGCCTTCGTTTTCTGTTCATGAGCGACGGTTCACCGT
TAGCTTTTGAACGTTCGTTCTCCGATCCACGATCACAAATTTCGGGTTCG
GTTTCGGAATCGGATCGGATAAAGCATCCGACTTCGCTTTCGAATCCGAC
TGTTGGCACATTAGGGTAAGCATTTGGCAATTCGGAAACCAGAATTTGAA
CCGACCTTGGATTGAGGGGCCTTGAAATTCGCCACCCTTTGTATATACCT
TTTTTTGTCATTCTTATTTTTGTTATACATTATACTGTCATATCAACAGG
TGTTCGACCCTCTGTGCGCGGGGTTCACCGACGCTGCAGCCCCTCTCCGC
GAGCTGACCCTCAAGAGCATGGTCGCGTTCACGGGCCAGCTGTCGGAGAA
GAACATGAACGAGAAGCTCATAAAGCACCTCGCCAGGCTACAGGTGCTT
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Coding sequence (CDS) from alignment at F-distichus_contig103768:689..1837-

>mRNA_F-distichus_contig103768.336.1 ID=mRNA_F-distichus_contig103768.336.1|Name=mRNA_F-distichus_contig103768.336.1|organism=Fucus distichus monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at F-distichus_contig103768:689..1837- (Fucus distichus monoicous)
CCCGTCCTGGCCGGACTCTTTGTCGTAAACGATCGAGGCGTCAGGGTGAT
GCTCCTCACGAGCATCCCCGCCTACGCCAAGCGGCTGGAGGACAAGGTGG
TGAATGACCAGCCCGTCCTGGCCGGACTCTTTGTCGTAAACGATCGAGGC
GTCAGGGTGATGCTCCTCACGAGCATCCCCGCCTACGCCAAGCGGCTGGA
GGACAAGGTGGTGAATGACCAGGTGTTCGACCCTCTGTGCGCGGGGTTCA
CCGACGCTGCAGCCCCTCTCCGCGAGCTGACCCTCAAGAGCATGGTCGCG
TTCACGGGCCAGCTGTCGGAGAAGAACATGAACGAGAAGCTCATAAAGCA
CCTCGCCAGGCTACAGGTGCTTGTGTTCGACCCTCTGTGCGCGGGGTTCA
CCGACGCTGCAGCCCCTCTCCGCGAGCTGACCCTCAAGAGCATGGTCGCG
TTCACGGGCCAGCTGTCGGAGAAGAACATGAACGAGAAGCTCATAAAGCA
CCTCGCCAGGCTACAGGTGCTT
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