mRNA_F-distichus_contig103360.296.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103360.296.1
Unique NamemRNA_F-distichus_contig103360.296.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103360.296.1 vs. uniprot
Match: D7FZY9_ECTSI (Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZY9_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 2.120e-13
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    1 GFSGAEFKKFKSENDAAAYVKDQHTRAREEPG---PPPPGSTTLWFDGGSRGNPGMSGAGAVIFDDSEKEL 204
            GF GA+F+KFK+  +A  Y         +E G   P P G +TLWFDGG RGNPG SGAGAVIF+DSEKEL
Sbjct:   10 GFPGADFRKFKTPEEATDYAN-----LVDEGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKEL 75
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BLAST of mRNA_F-distichus_contig103360.296.1 vs. uniprot
Match: A0A6H5L4R0_9PHAE (RNase H type-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4R0_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.160e-13
Identity = 41/71 (57.75%), Postives = 48/71 (67.61%), Query Frame = 1 
Query:    1 GFSGAEFKKFKSENDAAAYVKDQHTRAREEPG---PPPPGSTTLWFDGGSRGNPGMSGAGAVIFDDSEKEL 204
            GF GA+F+KFK+  +A  Y         +E G   P P G +TLWFDGG RGNPG SGAGAVIF+DSEKEL
Sbjct:   33 GFPGADFRKFKTPEEATDYAN-----LVDEGGGLNPAPAGWSTLWFDGGCRGNPGPSGAGAVIFNDSEKEL 98
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103360.296.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZY9_ECTSI2.120e-1357.75Ribonuclease H n=1 Tax=Ectocarpus siliculosus TaxI... [more]
A0A6H5L4R0_9PHAE2.160e-1357.75RNase H type-1 domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103360contigF-distichus_contig103360:221..424 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue5.4e-11
Seed eggNOG ortholog2880.D7FZY9
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNase H
EggNOG OGs2S89Z@2759,COG0328@1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928952.0456815-CDS-F-distichus_contig103360:220..4241622928952.0456815-CDS-F-distichus_contig103360:220..424Fucus distichus monoicousCDSF-distichus_contig103360 221..424 -
1690885079.8045247-CDS-F-distichus_contig103360:220..4241690885079.8045247-CDS-F-distichus_contig103360:220..424Fucus distichus monoicousCDSF-distichus_contig103360 221..424 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103360.296.1prot_F-distichus_contig103360.296.1Fucus distichus monoicouspolypeptideF-distichus_contig103360 221..424 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103360.296.1

>prot_F-distichus_contig103360.296.1 ID=prot_F-distichus_contig103360.296.1|Name=mRNA_F-distichus_contig103360.296.1|organism=Fucus distichus monoicous|type=polypeptide|length=68bp
GFSGAEFKKFKSENDAAAYVKDQHTRAREEPGPPPPGSTTLWFDGGSRGN
PGMSGAGAVIFDDSEKEL
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mRNA from alignment at F-distichus_contig103360:221..424-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103360.296.1 ID=mRNA_F-distichus_contig103360.296.1|Name=mRNA_F-distichus_contig103360.296.1|organism=Fucus distichus monoicous|type=mRNA|length=204bp|location=Sequence derived from alignment at F-distichus_contig103360:221..424- (Fucus distichus monoicous)
GGCTTCTCCGGTGCAGAATTCAAGAAATTCAAATCGGAAAACGATGCGGC
GGCGTACGTCAAGGATCAGCACACTCGGGCTCGAGAGGAGCCCGGCCCGC
CCCCTCCGGGGTCAACTACGCTCTGGTTCGACGGCGGCAGCAGGGGAAAC
CCTGGCATGTCTGGGGCGGGCGCGGTGATATTCGATGACTCTGAGAAAGA
GCTT
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Coding sequence (CDS) from alignment at F-distichus_contig103360:221..424-

>mRNA_F-distichus_contig103360.296.1 ID=mRNA_F-distichus_contig103360.296.1|Name=mRNA_F-distichus_contig103360.296.1|organism=Fucus distichus monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at F-distichus_contig103360:221..424- (Fucus distichus monoicous)
GGCTTCTCCGGTGCAGAATTCAAGAAATTCAAATCGGAAAACGATGCGGC
GGCGTACGTCAAGGATCAGCACACTCGGGCTCGAGAGGAGCCCGGCCCGC
CCCCTCCGGGGTCAACTACGCTCTGGTTCGACGGCGGCAGCAGGGGAAAC
CCTGGCATGTCTGGGGCGGGCGCGGTGATATTCGATGACTCTGAGAAAGA
GCTTGGCTTCTCCGGTGCAGAATTCAAGAAATTCAAATCGGAAAACGATG
CGGCGGCGTACGTCAAGGATCAGCACACTCGGGCTCGAGAGGAGCCCGGC
CCGCCCCCTCCGGGGTCAACTACGCTCTGGTTCGACGGCGGCAGCAGGGG
AAACCCTGGCATGTCTGGGGCGGGCGCGGTGATATTCGATGACTCTGAGA
AAGAGCTT
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