mRNA_F-distichus_contig10331.291.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10331.291.1
Unique NamemRNA_F-distichus_contig10331.291.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10331.291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10331contigF-distichus_contig10331:5908..6393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size486
Cds size366
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.632481-UTR-F-distichus_contig10331:5907..60271622928951.632481-UTR-F-distichus_contig10331:5907..6027Fucus distichus monoicousUTRF-distichus_contig10331 5908..6027 +
1690885079.682948-UTR-F-distichus_contig10331:5907..60271690885079.682948-UTR-F-distichus_contig10331:5907..6027Fucus distichus monoicousUTRF-distichus_contig10331 5908..6027 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928951.6474168-CDS-F-distichus_contig10331:6027..63931622928951.6474168-CDS-F-distichus_contig10331:6027..6393Fucus distichus monoicousCDSF-distichus_contig10331 6028..6393 +
1690885079.6955035-CDS-F-distichus_contig10331:6027..63931690885079.6955035-CDS-F-distichus_contig10331:6027..6393Fucus distichus monoicousCDSF-distichus_contig10331 6028..6393 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10331.291.1prot_F-distichus_contig10331.291.1Fucus distichus monoicouspolypeptideF-distichus_contig10331 6028..6393 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10331.291.1

>prot_F-distichus_contig10331.291.1 ID=prot_F-distichus_contig10331.291.1|Name=mRNA_F-distichus_contig10331.291.1|organism=Fucus distichus monoicous|type=polypeptide|length=122bp
MPHEARRSVATSTQQERNIIHGGRSQKLAALNDGQSELDAVFHLPKRSQL
MHPDLDRDIKPLQSKQAGRCGGSLLPQGRRYGPDEGDSAKINTEPSQEAN
DHEDCPVSKSGVTHRQPSSKEL
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mRNA from alignment at F-distichus_contig10331:5908..6393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10331.291.1 ID=mRNA_F-distichus_contig10331.291.1|Name=mRNA_F-distichus_contig10331.291.1|organism=Fucus distichus monoicous|type=mRNA|length=486bp|location=Sequence derived from alignment at F-distichus_contig10331:5908..6393+ (Fucus distichus monoicous)
TGTTTTCCCTGCAGGCAATGCAAACATAGTAACACCTGCGTGCGCTTGCA
TTGACCTCCCAATATCCAGCCATTCTTTCTCCATCGATCGATTCTTCATC
GAAACAAGTGCGTACCCGATATGCCGCATGAAGCCAGGAGGAGTGTTGCG
ACCTCAACACAACAGGAAAGAAACATTATCCATGGCGGTCGGTCTCAAAA
GCTCGCCGCCCTGAACGACGGTCAAAGTGAACTCGATGCTGTATTCCATC
TACCGAAGCGTAGTCAACTAATGCACCCGGATTTGGACCGGGACATAAAA
CCCTTACAGTCAAAGCAAGCTGGAAGGTGCGGCGGTTCGTTACTGCCCCA
GGGACGGAGATATGGCCCAGACGAAGGCGACTCCGCGAAAATAAATACTG
AGCCTTCCCAGGAGGCCAATGACCATGAAGATTGCCCTGTAAGCAAGTCT
GGGGTGACACATCGCCAGCCTTCCTCAAAGGAGCTG
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Coding sequence (CDS) from alignment at F-distichus_contig10331:5908..6393+

>mRNA_F-distichus_contig10331.291.1 ID=mRNA_F-distichus_contig10331.291.1|Name=mRNA_F-distichus_contig10331.291.1|organism=Fucus distichus monoicous|type=CDS|length=732bp|location=Sequence derived from alignment at F-distichus_contig10331:5908..6393+ (Fucus distichus monoicous)
ATGCCGCATGAAGCCAGGAGGAGTGTTGCGACCTCAACACAACAGGAAAG
AAACATTATCCATGGCGGTCGGTCTCAAAAGCTCGCCGCCCTGAACGACG
GTCAAAGTGAACTCGATGCTGTATTCCATCTACCGAAGCGTAGTCAACTA
ATGCACCCGGATTTGGACCGGGACATAAAACCCTTACAGTCAAAGCAAGC
TGGAAGGTGCGGCGGTTCGTTACTGCCCCAGGGACGGAGATATGGCCCAG
ACGAAGGCGACTCCGCGAAAATAAATACTGAGCCTTCCCAGGAGGCCAAT
GACCATGAAGATTGCCCTGTAAGCAAGTCTGGGGTGACACATCGCCAGCC
TTCCTCAAAGGAGCTGATGCCGCATGAAGCCAGGAGGAGTGTTGCGACCT
CAACACAACAGGAAAGAAACATTATCCATGGCGGTCGGTCTCAAAAGCTC
GCCGCCCTGAACGACGGTCAAAGTGAACTCGATGCTGTATTCCATCTACC
GAAGCGTAGTCAACTAATGCACCCGGATTTGGACCGGGACATAAAACCCT
TACAGTCAAAGCAAGCTGGAAGGTGCGGCGGTTCGTTACTGCCCCAGGGA
CGGAGATATGGCCCAGACGAAGGCGACTCCGCGAAAATAAATACTGAGCC
TTCCCAGGAGGCCAATGACCATGAAGATTGCCCTGTAAGCAAGTCTGGGG
TGACACATCGCCAGCCTTCCTCAAAGGAGCTG
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