mRNA_F-distichus_contig103282.288.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103282.288.1
Unique NamemRNA_F-distichus_contig103282.288.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig103282.288.1 vs. uniprot
Match: A0A6H5L7F0_9PHAE (Endo/exonuclease/phosphatase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F0_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 4.490e-28
Identity = 61/92 (66.30%), Postives = 68/92 (73.91%), Query Frame = 1 
Query:    1 EELQLLLDSSADDFDFLVPNIMDGSSTGLEGAARGPCSRTSSLGDSLPRPGAGCVLETAYSRIWPPSLEKGVWPADYNISDHGSLTTYFRVA 276
            EELQLLLDSS DDFDFLVP I+DGSSTGLEGA +       + GD+      G  LE A SRIWPPSLE+G WP+DY +SDHGSLTT FRVA
Sbjct:  446 EELQLLLDSSDDDFDFLVPTILDGSSTGLEGAQQSGLGGGDASGDAC-----GSTLEPASSRIWPPSLEQGHWPSDYTMSDHGSLTTSFRVA 532
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BLAST of mRNA_F-distichus_contig103282.288.1 vs. uniprot
Match: D7G0H3_ECTSI (Carbon catabolite repressor protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0H3_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.820e-27
Identity = 59/92 (64.13%), Postives = 66/92 (71.74%), Query Frame = 1 
Query:    1 EELQLLLDSSADDFDFLVPNIMDGSSTGLEGAARGPCSRTSSLGDSLPRPGAGCVLETAYSRIWPPSLEKGVWPADYNISDHGSLTTYFRVA 276
            EELQLLLDSS DDFDFLVP I+DGSSTGLEGA +       + GD+      G  LE   SRIWPPSLE+G WP+DY +SDHGSLT  FRVA
Sbjct:  400 EELQLLLDSSDDDFDFLVPTILDGSSTGLEGAQQSGLGAGGASGDAC-----GSTLEPTSSRIWPPSLEQGHWPSDYTMSDHGSLTASFRVA 486
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103282.288.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7F0_9PHAE4.490e-2866.30Endo/exonuclease/phosphatase domain-containing pro... [more]
D7G0H3_ECTSI4.820e-2764.13Carbon catabolite repressor protein, putative n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103282contigF-distichus_contig103282:280..1279 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.2
Seed ortholog evalue1.7e-23
Seed eggNOG ortholog2880.D7G0H3
KEGG koko:K19612,ko:K21777
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006950,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0050896
EggNOG free text desc.Endonuclease/Exonuclease/phosphatase family
EggNOG OGsCOG5239@1,KOG2338@2759
Ec32 ortholog descriptionEndonuclease/exonuclease/phosphatase
Ec32 orthologEc-19_003320.2
EC3.1.13.4
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019,ko03029,ko03032,ko03036
Exons2
Model size276
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928950.6759658-CDS-F-distichus_contig103282:279..3841622928950.6759658-CDS-F-distichus_contig103282:279..384Fucus distichus monoicousCDSF-distichus_contig103282 280..384 -
1690885079.2866833-CDS-F-distichus_contig103282:279..3841690885079.2866833-CDS-F-distichus_contig103282:279..384Fucus distichus monoicousCDSF-distichus_contig103282 280..384 -
1622928950.6875598-CDS-F-distichus_contig103282:1108..12791622928950.6875598-CDS-F-distichus_contig103282:1108..1279Fucus distichus monoicousCDSF-distichus_contig103282 1109..1279 -
1690885079.297788-CDS-F-distichus_contig103282:1108..12791690885079.297788-CDS-F-distichus_contig103282:1108..1279Fucus distichus monoicousCDSF-distichus_contig103282 1109..1279 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103282.288.1prot_F-distichus_contig103282.288.1Fucus distichus monoicouspolypeptideF-distichus_contig103282 280..1279 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103282.288.1

>prot_F-distichus_contig103282.288.1 ID=prot_F-distichus_contig103282.288.1|Name=mRNA_F-distichus_contig103282.288.1|organism=Fucus distichus monoicous|type=polypeptide|length=92bp
EELQLLLDSSADDFDFLVPNIMDGSSTGLEGAARGPCSRTSSLGDSLPRP
GAGCVLETAYSRIWPPSLEKGVWPADYNISDHGSLTTYFRVA
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mRNA from alignment at F-distichus_contig103282:280..1279-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103282.288.1 ID=mRNA_F-distichus_contig103282.288.1|Name=mRNA_F-distichus_contig103282.288.1|organism=Fucus distichus monoicous|type=mRNA|length=1000bp|location=Sequence derived from alignment at F-distichus_contig103282:280..1279- (Fucus distichus monoicous)
GAAGAGCTTCAGCTGTTGCTGGATAGCTCCGCCGACGATTTTGACTTCCT
CGTTCCCAACATCATGGATGGGAGTTCGACAGGGCTGGAAGGAGCTGCGA
GAGGACCGTGCTCGAGGACGTCTTCCCTCGGGGATTCGCTGCCTCGCCCC
GGAGCAGGCTGTGTTCTCGAGGTACAGAATGTACTCCTTGTTGTCCACGG
CGCCGACGCTGGTCCGTCTATTTTTGACATTTGGTTCATCGATTGCTCTT
GATTTTATATTCTTGAAGTATTGAAGTATTGACTGCGTCGGGCAAGGCGG
GCGGGGAGAGGTTCAGGAGGGGCTCTGCCCCTAGCTTCTGTGCCGTCACC
TTTGCCGTCGAGGAGGTTGGACAGTTAAAACTGAAAATGCACTAACATAT
CCTCATTGAACTTCTTATTGTGTTCATATTCACCAACAACAGCAACAACT
GTTATTAATATTACATTATGTCGAAGAGGATAATATTTAAACAAAAGAGG
GGTTTCTCTCGATACACACCCACGTGCGTTCGCTTTGGGGGGGGCAAACA
TTTTTTTCCCCATCGCTCTCGACAACAAGTCGAAGTGTTTGTTAAGTCAT
GTAGACACACCAAAGACATTTCCCGGTGCTGTACCACACCCGCATGTATT
CTATTTTAGCATGATTAAAAATAAAAACAAATCATCCCTGACAAGTCCAA
ATATAGATTATGTACCTATCGCAATCGAAAGGGGTCCTTTGAGGGCGCTC
TCTCTCTGGGACCTTTTTTTCGACAAAATTTATCCTTGATGCTGTCTGTA
AAAATAAGGATTGGACCACCGCCGTCGCTTGCTCTCCGCGGTTCCAGCAG
AAAAATATCGCCTCTCTGCGTCCTTTTTTTTTGTTCTTCTTGCAGACGGC
GTACTCTCGAATATGGCCACCGTCACTGGAGAAGGGCGTGTGGCCCGCGG
ACTACAACATTAGCGACCACGGGTCCCTCACGACGTACTTCCGAGTGGCC
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Coding sequence (CDS) from alignment at F-distichus_contig103282:280..1279-

>mRNA_F-distichus_contig103282.288.1 ID=mRNA_F-distichus_contig103282.288.1|Name=mRNA_F-distichus_contig103282.288.1|organism=Fucus distichus monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at F-distichus_contig103282:280..1279- (Fucus distichus monoicous)
GAAGAGCTTCAGCTGTTGCTGGATAGCTCCGCCGACGATTTTGACTTCCT
CGTTCCCAACATCATGGATGGGAGTTCGACAGGGCTGGAAGGAGCTGCGA
GAGGACCGTGCTCGAGGACGTCTTCCCTCGGGGATTCGCTGCCTCGCCCC
GGAGCAGGCTGTGTTCTCGAGGAAGAGCTTCAGCTGTTGCTGGATAGCTC
CGCCGACGATTTTGACTTCCTCGTTCCCAACATCATGGATGGGAGTTCGA
CAGGGCTGGAAGGAGCTGCGAGAGGACCGTGCTCGAGGACGTCTTCCCTC
GGGGATTCGCTGCCTCGCCCCGGAGCAGGCTGTGTTCTCGAGACGGCGTA
CTCTCGAATATGGCCACCGTCACTGGAGAAGGGCGTGTGGCCCGCGGACT
ACAACATTAGCGACCACGGGTCCCTCACGACGTACTTCCGAGTGGCCACG
GCGTACTCTCGAATATGGCCACCGTCACTGGAGAAGGGCGTGTGGCCCGC
GGACTACAACATTAGCGACCACGGGTCCCTCACGACGTACTTCCGAGTGG
CC
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