mRNA_F-distichus_contig103217.286.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: D8LG55_ECTSI (Similar to Stromal cell-derived factor 2 (SDF-2) (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG55_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 1.150e-17 Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1
Query: 31 VLVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
VLVTCGSVIKLR++ T++HLHSH IKWGGGSGQQSVT HG EDD
Sbjct: 27 VLVTCGSVIKLRHDTTRFHLHSHVIKWGGGSGQQSVTGHGGEDD 70
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A7S3DBZ2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBZ2_9EUKA) HSP 1 Score: 63.9 bits (154), Expect = 5.690e-11 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query: 37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
VTCGS IKL+N A+ + LHSH +KWG GSGQQSVT+ GS+DD
Sbjct: 28 VTCGSSIKLKNRASGFRLHSHDVKWGSGSGQQSVTSTGSKDD 69
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A7S1DH25_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DH25_HEMAN) HSP 1 Score: 62.4 bits (150), Expect = 7.330e-11 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query: 37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
VTCGSVIKL++ +T Y LHSH +KWG GS QQSVTAH ++DD
Sbjct: 37 VTCGSVIKLQHASTGYMLHSHDVKWGSGSTQQSVTAHKNKDD 78
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A835YSR9_9STRA (MIR motif-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR9_9STRA) HSP 1 Score: 62.0 bits (149), Expect = 1.370e-10 Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1
Query: 31 VLVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
V VTCGS +KL++ T Y LHSH ++WG GSGQQSVTA+G+ DD
Sbjct: 22 VEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADD 65
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A4D9DC59_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC59_9STRA) HSP 1 Score: 62.8 bits (151), Expect = 1.730e-10 Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1
Query: 34 LVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
++T GSV+KL++ +KY LHSH I WG GSGQQSVTAHGS DD
Sbjct: 29 IMTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADD 71
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A067CV48_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CV48_SAPPC) HSP 1 Score: 62.8 bits (151), Expect = 3.060e-10 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query: 37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
VTCGS IKL +EA+++ LHSH + +G GSGQQSVTAHGS DD
Sbjct: 98 VTCGSTIKLVHEASRFRLHSHEVNYGTGSGQQSVTAHGSRDD 139
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A1Y1IMV2_KLENI (Stromal cell-derived factor 2-like protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMV2_KLENI) HSP 1 Score: 61.6 bits (148), Expect = 4.350e-10 Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1
Query: 4 ETTIPTTTSVLVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
+T I +V VTCGSVIKL +E TK+ LHSH + +G GSGQQSVTA S DD
Sbjct: 20 DTVIAAAPAVEVTCGSVIKLMHERTKFRLHSHEVAYGSGSGQQSVTAFPSGDD 72
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: K3X1Y8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1Y8_GLOUD) HSP 1 Score: 62.4 bits (150), Expect = 4.350e-10 Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query: 37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
VTCGS IKL +E T++ LHSH I +GGGSGQQS+TAHGS +D
Sbjct: 107 VTCGSSIKLVHEQTRFRLHSHEIAYGGGSGQQSITAHGSRND 148
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A1V9Z5F8_9STRA (Stromal cell-derived factor 2 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5F8_9STRA) HSP 1 Score: 61.2 bits (147), Expect = 6.430e-10 Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1
Query: 37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
VTCGS IKL +E +++ LHSH + +G GSGQQSVTAHGS DD
Sbjct: 98 VTCGSTIKLVHEVSRFRLHSHEVNYGTGSGQQSVTAHGSRDD 139
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A6G0XVG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVG4_9STRA) HSP 1 Score: 61.6 bits (148), Expect = 8.240e-10 Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1
Query: 37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
VTCGS IKL +E +++ LHSH + +G GSGQQSVTAHGS+DD
Sbjct: 99 VTCGSTIKLVHEESRFRLHSHEVNYGTGSGQQSVTAHGSQDD 140 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig103217.286.1 >prot_F-distichus_contig103217.286.1 ID=prot_F-distichus_contig103217.286.1|Name=mRNA_F-distichus_contig103217.286.1|organism=Fucus distichus monoicous|type=polypeptide|length=54bp AETTIPTTTSVLVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGback to top mRNA from alignment at F-distichus_contig103217:1858..2019+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig103217.286.1 ID=mRNA_F-distichus_contig103217.286.1|Name=mRNA_F-distichus_contig103217.286.1|organism=Fucus distichus monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at F-distichus_contig103217:1858..2019+ (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig103217:1858..2019+ >mRNA_F-distichus_contig103217.286.1 ID=mRNA_F-distichus_contig103217.286.1|Name=mRNA_F-distichus_contig103217.286.1|organism=Fucus distichus monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at F-distichus_contig103217:1858..2019+ (Fucus distichus monoicous)back to top |