mRNA_F-distichus_contig103217.286.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig103217.286.1
Unique NamemRNA_F-distichus_contig103217.286.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: D8LG55_ECTSI (Similar to Stromal cell-derived factor 2 (SDF-2) (Partial) (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG55_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.150e-17
Identity = 36/44 (81.82%), Postives = 40/44 (90.91%), Query Frame = 1
Query:   31 VLVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            VLVTCGSVIKLR++ T++HLHSH IKWGGGSGQQSVT HG EDD
Sbjct:   27 VLVTCGSVIKLRHDTTRFHLHSHVIKWGGGSGQQSVTGHGGEDD 70          
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A7S3DBZ2_9EUKA (Hypothetical protein n=1 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3DBZ2_9EUKA)

HSP 1 Score: 63.9 bits (154), Expect = 5.690e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            VTCGS IKL+N A+ + LHSH +KWG GSGQQSVT+ GS+DD
Sbjct:   28 VTCGSSIKLKNRASGFRLHSHDVKWGSGSGQQSVTSTGSKDD 69          
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A7S1DH25_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1DH25_HEMAN)

HSP 1 Score: 62.4 bits (150), Expect = 7.330e-11
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            VTCGSVIKL++ +T Y LHSH +KWG GS QQSVTAH ++DD
Sbjct:   37 VTCGSVIKLQHASTGYMLHSHDVKWGSGSTQQSVTAHKNKDD 78          
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A835YSR9_9STRA (MIR motif-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR9_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.370e-10
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1
Query:   31 VLVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            V VTCGS +KL++  T Y LHSH ++WG GSGQQSVTA+G+ DD
Sbjct:   22 VEVTCGSTVKLQHVKTGYQLHSHQVRWGAGSGQQSVTANGAADD 65          
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A4D9DC59_9STRA (Uncharacterized protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DC59_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.730e-10
Identity = 29/43 (67.44%), Postives = 35/43 (81.40%), Query Frame = 1
Query:   34 LVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            ++T GSV+KL++  +KY LHSH I WG GSGQQSVTAHGS DD
Sbjct:   29 IMTFGSVVKLQHVPSKYFLHSHQISWGSGSGQQSVTAHGSADD 71          
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A067CV48_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CV48_SAPPC)

HSP 1 Score: 62.8 bits (151), Expect = 3.060e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            VTCGS IKL +EA+++ LHSH + +G GSGQQSVTAHGS DD
Sbjct:   98 VTCGSTIKLVHEASRFRLHSHEVNYGTGSGQQSVTAHGSRDD 139          
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A1Y1IMV2_KLENI (Stromal cell-derived factor 2-like protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IMV2_KLENI)

HSP 1 Score: 61.6 bits (148), Expect = 4.350e-10
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1
Query:    4 ETTIPTTTSVLVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            +T I    +V VTCGSVIKL +E TK+ LHSH + +G GSGQQSVTA  S DD
Sbjct:   20 DTVIAAAPAVEVTCGSVIKLMHERTKFRLHSHEVAYGSGSGQQSVTAFPSGDD 72          
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: K3X1Y8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X1Y8_GLOUD)

HSP 1 Score: 62.4 bits (150), Expect = 4.350e-10
Identity = 29/42 (69.05%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            VTCGS IKL +E T++ LHSH I +GGGSGQQS+TAHGS +D
Sbjct:  107 VTCGSSIKLVHEQTRFRLHSHEIAYGGGSGQQSITAHGSRND 148          
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A1V9Z5F8_9STRA (Stromal cell-derived factor 2 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z5F8_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.430e-10
Identity = 28/42 (66.67%), Postives = 34/42 (80.95%), Query Frame = 1
Query:   37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            VTCGS IKL +E +++ LHSH + +G GSGQQSVTAHGS DD
Sbjct:   98 VTCGSTIKLVHEVSRFRLHSHEVNYGTGSGQQSVTAHGSRDD 139          
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Match: A0A6G0XVG4_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XVG4_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 8.240e-10
Identity = 28/42 (66.67%), Postives = 35/42 (83.33%), Query Frame = 1
Query:   37 VTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHGSEDD 162
            VTCGS IKL +E +++ LHSH + +G GSGQQSVTAHGS+DD
Sbjct:   99 VTCGSTIKLVHEESRFRLHSHEVNYGTGSGQQSVTAHGSQDD 140          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig103217.286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LG55_ECTSI1.150e-1781.82Similar to Stromal cell-derived factor 2 (SDF-2) (... [more]
A0A7S3DBZ2_9EUKA5.690e-1169.05Hypothetical protein n=1 Tax=Palpitomonas bilix Ta... [more]
A0A7S1DH25_HEMAN7.330e-1169.05Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A835YSR9_9STRA1.370e-1063.64MIR motif-containing protein n=1 Tax=Tribonema min... [more]
A0A4D9DC59_9STRA1.730e-1067.44Uncharacterized protein n=4 Tax=Monodopsidaceae Ta... [more]
A0A067CV48_SAPPC3.060e-1069.05Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A1Y1IMV2_KLENI4.350e-1060.38Stromal cell-derived factor 2-like protein n=1 Tax... [more]
K3X1Y8_GLOUD4.350e-1069.05Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A1V9Z5F8_9STRA6.430e-1066.67Stromal cell-derived factor 2 (Fragment) n=1 Tax=T... [more]
A0A6G0XVG4_9STRA8.240e-1066.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig103217contigF-distichus_contig103217:1858..2019 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.6
Seed ortholog evalue1.2e-13
Seed eggNOG ortholog2880.D8LG55
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.dolichyl-phosphate-mannose-protein mannosyltransferase activity
EggNOG OGsCOG1928@1,KOG3358@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size162
Cds size162
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622928950.4872627-CDS-F-distichus_contig103217:1857..20191622928950.4872627-CDS-F-distichus_contig103217:1857..2019Fucus distichus monoicousCDSF-distichus_contig103217 1858..2019 +
1690885079.190437-CDS-F-distichus_contig103217:1857..20191690885079.190437-CDS-F-distichus_contig103217:1857..2019Fucus distichus monoicousCDSF-distichus_contig103217 1858..2019 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig103217.286.1prot_F-distichus_contig103217.286.1Fucus distichus monoicouspolypeptideF-distichus_contig103217 1858..2019 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig103217.286.1

>prot_F-distichus_contig103217.286.1 ID=prot_F-distichus_contig103217.286.1|Name=mRNA_F-distichus_contig103217.286.1|organism=Fucus distichus monoicous|type=polypeptide|length=54bp
AETTIPTTTSVLVTCGSVIKLRNEATKYHLHSHTIKWGGGSGQQSVTAHG
SEDD
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mRNA from alignment at F-distichus_contig103217:1858..2019+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig103217.286.1 ID=mRNA_F-distichus_contig103217.286.1|Name=mRNA_F-distichus_contig103217.286.1|organism=Fucus distichus monoicous|type=mRNA|length=162bp|location=Sequence derived from alignment at F-distichus_contig103217:1858..2019+ (Fucus distichus monoicous)
GCTGAAACCACGATTCCGACAACAACATCAGTGCTGGTGACCTGCGGTAG CGTGATCAAGCTCCGCAACGAGGCCACCAAGTACCACCTACACTCCCACA CGATCAAGTGGGGCGGTGGCAGCGGACAGCAGAGCGTCACCGCTCACGGC AGCGAGGACGAC
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Coding sequence (CDS) from alignment at F-distichus_contig103217:1858..2019+

>mRNA_F-distichus_contig103217.286.1 ID=mRNA_F-distichus_contig103217.286.1|Name=mRNA_F-distichus_contig103217.286.1|organism=Fucus distichus monoicous|type=CDS|length=324bp|location=Sequence derived from alignment at F-distichus_contig103217:1858..2019+ (Fucus distichus monoicous)
GCTGAAACCACGATTCCGACAACAACATCAGTGCTGGTGACCTGCGGTAG
CGTGATCAAGCTCCGCAACGAGGCCACCAAGTACCACCTACACTCCCACA
CGATCAAGTGGGGCGGTGGCAGCGGACAGCAGAGCGTCACCGCTCACGGC
AGCGAGGACGACGCTGAAACCACGATTCCGACAACAACATCAGTGCTGGT
GACCTGCGGTAGCGTGATCAAGCTCCGCAACGAGGCCACCAAGTACCACC
TACACTCCCACACGATCAAGTGGGGCGGTGGCAGCGGACAGCAGAGCGTC
ACCGCTCACGGCAGCGAGGACGAC
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